Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000778

Physical Location & Seq

Genomic Coordinates Forward (+)

60733567 .. 60736693

Gene Structure 3127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG349600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAATCTTCCCCCAGGAAGTTTCGGATGGCCAATCATCGGTGAAACTTTCGCCTTTCTGAATGAGCCGCAGGAGAAGTTCGTGGGCGACAGAATGAAGAAATACTCCCCAAAAGTCTTCAAAACGAGCATACTCGATGAGCCAACTGCCGTGCTTTGCGGCATTTCCGGCCACAAGTTCATCTCTTCCAACGAGGAAAAACTGTTTCTGTCATGGCGACCGCAGTCCACACAGAAACTCTTCCGCTCCTCCTATCAAAAAGCTGCTTCCGAGATCACCAAACGAGCCGATTCAGTCCATATCGGTAAAGCACCAGGGTTTCTTAAACCTGAAGCGGTGGTTCGGTACATAGAGATCATGGAGTCCATAGTTCAGGAGCATTTGAAGGTTCACTGGGAAGGAAAAAGCACAGTTGAGATTTACAGCCTCGCTCAGCTACTTGTAACGACTCTGTCCGCTCGATTCTTCACTGGACTCCAAAACAATAACGACCGTTGTGTTAAGTTTGCCGAGTTGATTAATATCATAGCCTCAGGGCTGCATACGTTCCCAATTAGTATTCCAGGAACCGAGTTTTATCGAGCGATGAAAGCAGCCGAGGCTATGAGGAAGGAGGTTCTGTTGTTGATCAAGGAGAAGAAAGCGGCCGTGTCTTCCAGTGGAGCCAAAGTAACCGACATCATGTCTCATTTGCTGTTTAACCCGGATCCGACTGGACGGTTCATACCGGAGAATGAAGTTGCAGATAAGGTCATGGGTTTGATGACGGGTGGATTTCACTCCCCTTCCATGGCTACAAGTTTTCTCATCAAGTTTCTTGGTGAAAACCCTAAAGTTTGTGAGAAAGTCCGAACAGAGAAAAATGTCTCAACGAGCTATGAAGGCAAGAAGCAAACCACCAGACAACCAGAAATATGCCAGGCAAAGAAACTATACAATCTCAAACAACTACATCTGTTCATCCGAATGATAACTTATAACAACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

329

Amino Acids

37.05

Weight (kDa)

9.42

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	4 - 286	1.2e-10	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000778)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26650 FvH4_2g26650 FvH4_3g24410 FvH4_4g26210
malus_domestica	MD13G1029100.v1.1 MD13G1030800.v1.1
prunus_persica	Prupe.1G321100_v2.0.a1
pyrus_communis	pycom16g02780
rosa_chinensis	RchiOBHm_Chr2g0129461 RchiOBHm_Chr4g0393701 RchiOBHm_Chr4g0393721 RchiOBHm_Chr4g0393731 RchiOBHm_Chr4g0393751 RchiOBHm_Chr4g0393771 RchiOBHm_Chr4g0393831 RchiOBHm_Chr4g0433371 RchiOBHm_Chr4g0433791 RchiOBHm_Chr4g0433841 RchiOBHm_Chr4g0433851
rosa_laevigata	RLG00000006723 RLG00000006725 RLG00000006727 RLG00000006729 RLG00000006730 RLG00000006759 RLG00000009732 RLG00000009733 RLG00000009734 RLG00000019082
rosa_multiflora	Rmu_co8360525.1_g000001 Rmu_sc0000759.1_g000012 Rmu_sc0000928.1_g000012 Rmu_sc0000928.1_g000019 Rmu_sc0000999.1_g000012 Rmu_sc0002912.1_g000012 Rmu_sc0002912.1_g000013 Rmu_sc0002912.1_g000023 Rmu_sc0002912.1_g000032 Rmu_sc0006151.1_g000001 Rmu_ssc0000164.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114580 Rroxscaffold_5G00338900 Rroxscaffold_5G00338920 Rroxscaffold_5G00339220 Rroxscaffold_5G00375230 Rroxscaffold_5G00375250
rosa_rugosa	Rorug02G0286700 Rorug03G0371300 Rorug04G0271600 Rorug04G0271600 Rorug04G0271700
rosa_samantha	Rh2BG346900 Rh4AG048800 Rh4AG048900 Rh4AG323000 Rh4AG326200 Rh4AG326400 Rh4AG326500 Rh4CG052100 Rh4CG052200 Rh4CG349500 Rh4CG349600
rosa_wichuraiana	Rw0G021530 Rw2G027930 Rw4G003870 Rw4G003880 Rw4G027970 Rw4G028250 Rw4G028260 Rw4G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	978
AccBSI	CCGCTC	2 cut(s)	246, 458
AciI	CCGC	7 cut(s)	68, 159, 221, 244, 335, 456, 644
AclWI	GGATC	2 cut(s)	701, 714
AcoI	YGGCCR	3 cut(s)	29, 169, 645
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	2 cut(s)	38, 790
AgsI	TTSAA	2 cut(s)	121, 385
AhdI	GACNNNNNGTC	1 cut(s)	682
AjnI	CCWGG	4 cut(s)	13, 313, 562, 918
AluBI	AGCT	3 cut(s)	263, 436, 876
AluI	AGCT	3 cut(s)	263, 436, 876
Alw26I	GTCTC	2 cut(s)	690, 871
AlwI	GGATC	2 cut(s)	701, 714
AoxI	GGCC	3 cut(s)	29, 169, 645
ApeKI	GCWGC	3 cut(s)	263, 538, 593
AseI	ATTAAT	1 cut(s)	519
Asp700I	GAANNNNTTC	1 cut(s)	239
AsuC2I	CCSGG	1 cut(s)	704
AsuHPI	GGTGA	3 cut(s)	53, 268, 833
AxyI	CCTNAGG	1 cut(s)	532
BalI	TGGCCA	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	706
BbsI	GAAGAC	2 cut(s)	109, 645
BbvI	GCAGC	3 cut(s)	250, 525, 605
BccI	CCATC	1 cut(s)	21
BceAI	ACGGC	2 cut(s)	134, 632
BciT130I	CCWGG	4 cut(s)	15, 315, 564, 920
BclI	TGATCA	1 cut(s)	627
BcnI	CCSGG	1 cut(s)	704
BcoDI	GTCTC	2 cut(s)	690, 871
BisI	GCNGC	6 cut(s)	68, 160, 264, 539, 594, 645
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	6 cut(s)	69, 161, 265, 540, 595, 646
Bme1390I	CCNGG	5 cut(s)	15, 315, 564, 704, 920
BmeRI	GACNNNNNGTC	1 cut(s)	682
BmiI	GGNNCC	3 cut(s)	568, 664, 708
BmrFI	CCNGG	5 cut(s)	15, 315, 564, 704, 920
BmrI	ACTGGG	1 cut(s)	403
BmuI	ACTGGG	1 cut(s)	403
BoxI	GACNNNNGTC	1 cut(s)	223
BpiI	GAAGAC	2 cut(s)	109, 645
Bpu1102I	GCTNAGC	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	704
BsaBI	GATNNNNATC	1 cut(s)	521
BsaJI	CCNNGG	4 cut(s)	13, 314, 597, 789
BsaWI	WCCGGW	1 cut(s)	727
BsaXI	ACNNNNNCTCC	4 cut(s)	605, 635, 654, 684
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 790
Bse1I	ACTGG	4 cut(s)	398, 475, 657, 718
Bse21I	CCTNAGG	1 cut(s)	532
Bse8I	GATNNNNATC	1 cut(s)	521
BseBI	CCWGG	4 cut(s)	15, 315, 564, 920
BseDI	CCNNGG	4 cut(s)	13, 314, 597, 789
BseGI	GGATG	2 cut(s)	32, 960
BseJI	GATNNNNATC	1 cut(s)	521
BseLI	CCNNNNNNNGG	2 cut(s)	38, 790
BseMII	CTCAG	2 cut(s)	446, 546
BseNI	ACTGG	4 cut(s)	398, 475, 657, 718
BseRI	GAGGAG	1 cut(s)	238
BseX3I	CGGCCG	1 cut(s)	645
BseXI	GCAGC	3 cut(s)	250, 525, 605
Bsh1285I	CGRYCG	3 cut(s)	221, 493, 648
BshFI	GGCC	3 cut(s)	31, 171, 647
BsiEI	CGRYCG	3 cut(s)	221, 493, 648
BsiSI	CCGG	3 cut(s)	168, 704, 728
BslI	CCNNNNNNNGG	2 cut(s)	38, 790
BsmAI	GTCTC	2 cut(s)	690, 871
BsnI	GGCC	3 cut(s)	31, 171, 647
Bsp143I	GATC	4 cut(s)	273, 354, 627, 706
Bsp1720I	GCTNAGC	1 cut(s)	432
Bsp19I	CCATGG	1 cut(s)	789
BspACI	CCGC	7 cut(s)	68, 159, 221, 244, 335, 456, 644
BspANI	GGCC	3 cut(s)	31, 171, 647
BspCNI	CTCAG	2 cut(s)	445, 545
BspLI	GGNNCC	3 cut(s)	568, 664, 708
BspPI	GGATC	2 cut(s)	701, 714
BsrBI	CCGCTC	2 cut(s)	246, 458
BsrI	ACTGG	4 cut(s)	398, 475, 657, 718
BssECI	CCNNGG	4 cut(s)	13, 314, 597, 789
BssMI	GATC	4 cut(s)	273, 354, 627, 706
BssT1I	CCWWGG	1 cut(s)	789
Bst2UI	CCWGG	4 cut(s)	15, 315, 564, 920
Bst4CI	ACNGT	4 cut(s)	204, 412, 494, 720
Bst6I	CTCTTC	2 cut(s)	190, 245
BstDEI	CTNAG	2 cut(s)	432, 532
BstDSI	CCRYGG	1 cut(s)	789
BstF5I	GGATG	2 cut(s)	32, 960
BstKTI	GATC	4 cut(s)	276, 357, 630, 709
BstMAI	GTCTC	2 cut(s)	690, 871
BstMBI	GATC	4 cut(s)	273, 354, 627, 706
BstMCI	CGRYCG	3 cut(s)	221, 493, 648
BstMWI	GCNNNNNNNGC	4 cut(s)	168, 590, 599, 882
BstNI	CCWGG	4 cut(s)	15, 315, 564, 920
BstPAI	GACNNNNGTC	1 cut(s)	223
BstSCI	CCNGG	5 cut(s)	13, 313, 562, 702, 918
BstV1I	GCAGC	3 cut(s)	250, 525, 605
BstV2I	GAAGAC	2 cut(s)	109, 645
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BstZI	CGGCCG	1 cut(s)	645
Bsu36I	CCTNAGG	1 cut(s)	532
BsuRI	GGCC	3 cut(s)	31, 171, 647
BtgI	CCRYGG	1 cut(s)	789
BtgZI	GCGATG	1 cut(s)	599
BtsCI	GGATG	2 cut(s)	32, 960
BtsIMutI	CAGTG	3 cut(s)	391, 468, 664
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	5 cut(s)	213, 358, 682, 754, 790
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	432, 532
DpnI	GATC	4 cut(s)	275, 356, 629, 708
DpnII	GATC	4 cut(s)	273, 354, 627, 706
DriI	GACNNNNNGTC	1 cut(s)	682
EaeI	YGGCCR	3 cut(s)	29, 169, 645
EagI	CGGCCG	1 cut(s)	645
Eam1104I	CTCTTC	2 cut(s)	190, 245
Eam1105I	GACNNNNNGTC	1 cut(s)	682
EarI	CTCTTC	2 cut(s)	190, 245
EclXI	CGGCCG	1 cut(s)	645
Eco130I	CCWWGG	1 cut(s)	789
Eco52I	CGGCCG	1 cut(s)	645
Eco57I	CTGAAG	1 cut(s)	351
Eco81I	CCTNAGG	1 cut(s)	532
EcoRII	CCWGG	4 cut(s)	13, 313, 562, 918
EcoT14I	CCWWGG	1 cut(s)	789
ErhI	CCWWGG	1 cut(s)	789
FaeI	CATG	5 cut(s)	216, 361, 685, 757, 793
FatI	CATG	5 cut(s)	212, 357, 681, 753, 789
FbaI	TGATCA	1 cut(s)	627
Fnu4HI	GCNGC	6 cut(s)	68, 160, 264, 539, 594, 645
FokI	GGATG	2 cut(s)	39, 947
Fsp4HI	GCNGC	6 cut(s)	68, 160, 264, 539, 594, 645
GluI	GCNGC	6 cut(s)	68, 160, 264, 539, 594, 645
HaeIII	GGCC	3 cut(s)	31, 171, 647
HapII	CCGG	3 cut(s)	168, 704, 728
Hin1II	CATG	5 cut(s)	216, 361, 685, 757, 793
HinfI	GANTC	6 cut(s)	4, 290, 362, 448, 462, 474
HpaII	CCGG	3 cut(s)	168, 704, 728
HphI	GGTGA	3 cut(s)	53, 268, 833
Hpy166II	GTNNAC	2 cut(s)	228, 391
Hpy188I	TCNGA	6 cut(s)	26, 60, 271, 711, 851, 965
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	2 cut(s)	228, 391
HpyAV	CCTTC	5 cut(s)	379, 392, 604, 795, 875
HpyCH4III	ACNGT	4 cut(s)	204, 412, 494, 720
HpyCH4IV	ACGT	1 cut(s)	545
HpyCH4V	TGCA	2 cut(s)	541, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	168, 590, 599, 882
HpyF3I	CTNAG	2 cut(s)	432, 532
HpySE526I	ACGT	1 cut(s)	545
Hsp92II	CATG	5 cut(s)	216, 361, 685, 757, 793
Ksp22I	TGATCA	1 cut(s)	627
Kzo9I	GATC	4 cut(s)	273, 354, 627, 706
LmnI	GCTCC	3 cut(s)	251, 376, 662
Lsp1109I	GCAGC	3 cut(s)	250, 525, 605
MaeII	ACGT	1 cut(s)	545
MaeIII	GTNAC	2 cut(s)	442, 670
MalI	GATC	4 cut(s)	275, 356, 629, 708
MbiI	CCGCTC	2 cut(s)	246, 458
MboI	GATC	4 cut(s)	273, 354, 627, 706
MboII	GAAGA	7 cut(s)	109, 109, 177, 232, 457, 645, 649
MflI	RGATCY	1 cut(s)	706
MlsI	TGGCCA	1 cut(s)	31
MluCI	AATT	1 cut(s)	552
MluNI	TGGCCA	1 cut(s)	31
MlyI	GAGTC	3 cut(s)	371, 442, 468
MmeI	TCCRAC	2 cut(s)	213, 734
MnlI	CCTC	7 cut(s)	187, 259, 437, 541, 592, 600, 607
Mox20I	TGGCCA	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	31
MseI	TTAA	4 cut(s)	324, 501, 519, 699
MslI	CAYNNNNRTG	1 cut(s)	965
Msp20I	TGGCCA	1 cut(s)	31
MspI	CCGG	3 cut(s)	168, 704, 728
MspR9I	CCNGG	5 cut(s)	15, 315, 564, 704, 920
MvaI	CCWGG	4 cut(s)	15, 315, 564, 920
MwoI	GCNNNNNNNGC	4 cut(s)	168, 590, 599, 882
NciI	CCSGG	1 cut(s)	704
NcoI	CCATGG	1 cut(s)	789
NdeII	GATC	4 cut(s)	273, 354, 627, 706
NlaIII	CATG	5 cut(s)	216, 361, 685, 757, 793
NlaIV	GGNNCC	3 cut(s)	568, 664, 708
NmeAIII	GCCGAG	2 cut(s)	535, 622
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	4, 290, 462
PflFI	GACNNNGTC	1 cut(s)	451
PfoI	TCCNGGA	1 cut(s)	562
PkrI	GCNGC	6 cut(s)	69, 161, 265, 540, 595, 646
PleI	GAGTC	3 cut(s)	370, 442, 468
PpsI	GAGTC	3 cut(s)	370, 442, 468
PshAI	GACNNNNGTC	1 cut(s)	223
PshBI	ATTAAT	1 cut(s)	519
PsiI	TTATAA	1 cut(s)	978
Psp6I	CCWGG	4 cut(s)	13, 313, 562, 918
PspGI	CCWGG	4 cut(s)	13, 313, 562, 918
PspN4I	GGNNCC	3 cut(s)	568, 664, 708
PsuI	RGATCY	1 cut(s)	706
PsyI	GACNNNGTC	1 cut(s)	451
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	965
SaqAI	TTAA	4 cut(s)	324, 501, 519, 699
SatI	GCNGC	6 cut(s)	68, 160, 264, 539, 594, 645
Sau3AI	GATC	4 cut(s)	273, 354, 627, 706
SchI	GAGTC	3 cut(s)	371, 442, 468
ScrFI	CCNGG	5 cut(s)	15, 315, 564, 704, 920
SetI	ASST	8 cut(s)	265, 331, 390, 438, 548, 618, 753, 878
SmiMI	CAYNNNNRTG	1 cut(s)	965
Sse9I	AATT	1 cut(s)	552
SsiI	CCGC	7 cut(s)	68, 159, 221, 244, 335, 456, 644
StyD4I	CCNGG	5 cut(s)	13, 313, 562, 702, 918
StyI	CCWWGG	1 cut(s)	789
TaaI	ACNGT	4 cut(s)	204, 412, 494, 720
TaiI	ACGT	1 cut(s)	548
TaqI	TCGA	3 cut(s)	135, 460, 580
TasI	AATT	1 cut(s)	552
TauI	GCSGC	3 cut(s)	70, 162, 647
TfiI	GAWTC	3 cut(s)	4, 290, 462
Tru1I	TTAA	4 cut(s)	324, 501, 519, 699
Tru9I	TTAA	4 cut(s)	324, 501, 519, 699
TscAI	CASTG	3 cut(s)	398, 475, 664
TseI	GCWGC	3 cut(s)	263, 538, 593
TspDTI	ATGAA	8 cut(s)	17, 110, 169, 602, 712, 750, 894, 949
TspRI	CASTG	3 cut(s)	398, 475, 664
Tth111I	GACNNNGTC	1 cut(s)	451
VspI	ATTAAT	1 cut(s)	519
XmnI	GAANNNNTTC	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.