Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002912.1

Orthogroup ID

OG0000778

Physical Location & Seq

Genomic Coordinates Reverse (-)

132267 .. 133268

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002912.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atggattatagtaacctttacattttcttgtctacactacttgccatctttaccactactacccttgcattccttttaagtgcttataagtcaaaatcccatgaaaaatctattattcttcctccaggcagttttgggtggccgattatcggggaaacctttgccttcctatacaatgaccatgaaaaatttgtaggggatagaatgaaaaaatactcctccaaaatcttcaaaaccaagatactgggtgagccaaccgtggtgttatgtggcactgccggtcacaagtttgtggcttccaatgaagaaaagctctttgtagcatggagacctcactccatgcaaaaactcttccgctcttcttaccaaaaatctgcttccaccgtcataccaagacaaagcgaaatgcacatacttaaggcaccggggtttctgagagccgaagccctcgttggctacgtggcagcgatggattccatgattctcgaccacctgaaaacgcattgggatggcaaacaggtggttgaggctcatcgcctcactcagatactcattttgactctctcggctaagttcttcatgggactcgaagaccattgtcgtattgaaaagcttgcggagttgatggacaccatgacgctggcgcttcacactattcctgtgaatattccggggactgcatttcatcaagcaatgaaagcagcgtcggctgcgagggagattattcagtcgtttgttaaggagaagaaggaagttatggcgtctaccggaaacaaaatgcatgatcttttgtcttatatgatttctacgctagacccggttaccggaaggttaatgccggagaatgaaattgctgataaaattatggggaatgtggccgcttcgttcaactctccagctatgactactacttttgtcgtgaagttcttgggcgaaagacctgacatttatgaaaaagtccgaagtggtaaggttttattttctctcctcttatatgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

333

Amino Acids

37.34

Weight (kDa)

9.17

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000778)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26650 FvH4_2g26650 FvH4_3g24410 FvH4_4g26210
malus_domestica	MD13G1029100.v1.1 MD13G1030800.v1.1
prunus_persica	Prupe.1G321100_v2.0.a1
pyrus_communis	pycom16g02780
rosa_chinensis	RchiOBHm_Chr2g0129461 RchiOBHm_Chr4g0393701 RchiOBHm_Chr4g0393721 RchiOBHm_Chr4g0393731 RchiOBHm_Chr4g0393751 RchiOBHm_Chr4g0393771 RchiOBHm_Chr4g0393831 RchiOBHm_Chr4g0433371 RchiOBHm_Chr4g0433791 RchiOBHm_Chr4g0433841 RchiOBHm_Chr4g0433851
rosa_laevigata	RLG00000006723 RLG00000006725 RLG00000006727 RLG00000006729 RLG00000006730 RLG00000006759 RLG00000009732 RLG00000009733 RLG00000009734 RLG00000019082
rosa_multiflora	Rmu_co8360525.1_g000001 Rmu_sc0000759.1_g000012 Rmu_sc0000928.1_g000012 Rmu_sc0000928.1_g000019 Rmu_sc0000999.1_g000012 Rmu_sc0002912.1_g000012 Rmu_sc0002912.1_g000013 Rmu_sc0002912.1_g000023 Rmu_sc0002912.1_g000032 Rmu_sc0006151.1_g000001 Rmu_ssc0000164.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114580 Rroxscaffold_5G00338900 Rroxscaffold_5G00338920 Rroxscaffold_5G00339220 Rroxscaffold_5G00375230 Rroxscaffold_5G00375250
rosa_rugosa	Rorug02G0286700 Rorug03G0371300 Rorug04G0271600 Rorug04G0271600 Rorug04G0271700
rosa_samantha	Rh2BG346900 Rh4AG048800 Rh4AG048900 Rh4AG323000 Rh4AG326200 Rh4AG326400 Rh4AG326500 Rh4CG052100 Rh4CG052200 Rh4CG349500 Rh4CG349600
rosa_wichuraiana	Rw0G021530 Rw2G027930 Rw4G003870 Rw4G003880 Rw4G027970 Rw4G028250 Rw4G028260 Rw4G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
AccB1I	GGYRCC	1 cut(s)	421
AccBSI	CCGCTC	1 cut(s)	357
AccI	GTMKAC	2 cut(s)	32, 764
AciI	CCGC	3 cut(s)	355, 617, 879
AcoI	YGGCCR	2 cut(s)	140, 876
AcsI	RAATTY	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	761
AfiI	CCNNNNNNNGG	2 cut(s)	149, 824
AflII	CTTAAG	1 cut(s)	416
AgsI	TTSAA	3 cut(s)	232, 608, 889
AjnI	CCWGG	1 cut(s)	124
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	3 cut(s)	313, 613, 899
AluI	AGCT	3 cut(s)	313, 613, 899
Alw26I	GTCTC	1 cut(s)	322
AoxI	GGCC	2 cut(s)	140, 876
ApeKI	GCWGC	3 cut(s)	464, 701, 710
ApoI	RAATTY	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	646
AsuC2I	CCSGG	3 cut(s)	426, 672, 818
AsuHPI	GGTGA	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	597
BbvI	GCAGC	3 cut(s)	476, 697, 713
BccI	CCATC	4 cut(s)	53, 463, 503, 619
BciT130I	CCWGG	1 cut(s)	126
BcnI	CCSGG	3 cut(s)	426, 672, 818
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	812
BfoI	RGCGCY	1 cut(s)	647
BfrI	CTTAAG	1 cut(s)	416
BisI	GCNGC	4 cut(s)	465, 702, 711, 879
BlsI	GCNGC	4 cut(s)	466, 703, 712, 880
Bme1390I	CCNGG	4 cut(s)	126, 426, 672, 818
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	4 cut(s)	126, 426, 672, 818
BmrI	ACTGGG	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	254
BoxI	GACNNNNGTC	1 cut(s)	597
BpiI	GAAGAC	1 cut(s)	597
BpmI	CTGGAG	2 cut(s)	108, 879
BpuMI	CCSGG	3 cut(s)	426, 672, 818
BsaAI	YACGTR	1 cut(s)	460
BsaHI	GRCGYC	1 cut(s)	761
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	3 cut(s)	258, 425, 671
BsaWI	WCCGGW	2 cut(s)	767, 824
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 824
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	699
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	3 cut(s)	258, 425, 671
BseGI	GGATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	2 cut(s)	149, 824
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	2 cut(s)	425, 557
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	2 cut(s)	208, 977
BseXI	GCAGC	3 cut(s)	476, 697, 713
BshFI	GGCC	2 cut(s)	142, 878
BshNI	GGYRCC	1 cut(s)	421
BsiSI	CCGG	7 cut(s)	279, 425, 671, 768, 818, 825, 839
BslFI	GGGAC	2 cut(s)	597, 688
BslI	CCNNNNNNNGG	2 cut(s)	149, 824
BsmAI	GTCTC	1 cut(s)	322
BsmFI	GGGAC	2 cut(s)	597, 688
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	142, 878
Bso31I	GGTCTC	1 cut(s)	322
Bsp143I	GATC	1 cut(s)	784
BspACI	CCGC	3 cut(s)	355, 617, 879
BspANI	GGCC	2 cut(s)	142, 878
BspCNI	CTCAG	2 cut(s)	426, 556
BspLI	GGNNCC	1 cut(s)	423
BspQI	GCTCTTC	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	421
BspTI	CTTAAG	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	322
BsrBI	CCGCTC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	699
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	3 cut(s)	258, 425, 671
BssMI	GATC	1 cut(s)	784
BssNI	GRCGYC	1 cut(s)	761
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	259, 385
Bst6I	CTCTTC	2 cut(s)	356, 364
BstACI	GRCGYC	1 cut(s)	761
BstAFI	CTTAAG	1 cut(s)	416
BstBAI	YACGTR	1 cut(s)	460
BstC8I	GCNNGC	2 cut(s)	615, 642
BstDEI	CTNAG	3 cut(s)	434, 543, 570
BstDSI	CCRYGG	1 cut(s)	258
BstEII	GGTNACC	1 cut(s)	820
BstF5I	GGATG	1 cut(s)	514
BstH2I	RGCGCY	1 cut(s)	647
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	1 cut(s)	787
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	784
BstMWI	GCNNNNNNNGC	3 cut(s)	698, 707, 710
BstNI	CCWGG	1 cut(s)	126
BstPAI	GACNNNNGTC	1 cut(s)	597
BstPI	GGTNACC	1 cut(s)	820
BstSCI	CCNGG	4 cut(s)	124, 424, 670, 816
BstV1I	GCAGC	3 cut(s)	476, 697, 713
BstV2I	GAAGAC	1 cut(s)	597
BstXI	CCANNNNNNTGG	2 cut(s)	244, 640
BsuRI	GGCC	2 cut(s)	142, 878
BtgI	CCRYGG	1 cut(s)	258
BtgZI	GCGATG	2 cut(s)	482, 518
BtsCI	GGATG	1 cut(s)	514
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	615, 642
CfoI	GCGC	1 cut(s)	646
Cfr10I	RCCGGY	1 cut(s)	278
CseI	GACGC	3 cut(s)	646, 693, 750
CviAII	CATG	9 cut(s)	101, 182, 324, 340, 478, 580, 634, 782, 999
DdeI	CTNAG	3 cut(s)	434, 543, 570
DpnI	GATC	1 cut(s)	786
DpnII	GATC	1 cut(s)	784
EaeI	YGGCCR	2 cut(s)	140, 876
Eam1104I	CTCTTC	2 cut(s)	356, 364
EarI	CTCTTC	2 cut(s)	356, 364
Eco31I	GGTCTC	1 cut(s)	322
Eco91I	GGTNACC	1 cut(s)	820
EcoO65I	GGTNACC	1 cut(s)	820
EcoRII	CCWGG	1 cut(s)	124
EcoT22I	ATGCAT	2 cut(s)	783, 1000
FaeI	CATG	9 cut(s)	104, 185, 327, 343, 481, 583, 637, 785, 1002
FaqI	GGGAC	2 cut(s)	597, 688
FatI	CATG	9 cut(s)	100, 181, 323, 339, 477, 579, 633, 781, 998
FblI	GTMKAC	2 cut(s)	32, 764
Fnu4HI	GCNGC	4 cut(s)	465, 702, 711, 879
FokI	GGATG	1 cut(s)	521
Fsp4HI	GCNGC	4 cut(s)	465, 702, 711, 879
FspBI	CTAG	1 cut(s)	812
GlaI	GCGC	1 cut(s)	645
GluI	GCNGC	4 cut(s)	465, 702, 711, 879
GsuI	CTGGAG	2 cut(s)	108, 879
HaeII	RGCGCY	1 cut(s)	647
HaeIII	GGCC	2 cut(s)	142, 878
HapII	CCGG	7 cut(s)	279, 425, 671, 768, 818, 825, 839
HgaI	GACGC	3 cut(s)	646, 693, 750
HhaI	GCGC	1 cut(s)	646
Hin1I	GRCGYC	1 cut(s)	761
Hin1II	CATG	9 cut(s)	104, 185, 327, 343, 481, 583, 637, 785, 1002
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	4 cut(s)	473, 481, 559, 585
HpaII	CCGG	7 cut(s)	279, 425, 671, 768, 818, 825, 839
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	2 cut(s)	33, 765
Hpy188I	TCNGA	3 cut(s)	435, 546, 962
Hpy188III	TCNNGA	2 cut(s)	485, 919
Hpy8I	GTNNAC	2 cut(s)	33, 765
Hpy99I	CGWCG	1 cut(s)	709
HpyAV	CCTTC	3 cut(s)	175, 742, 822
HpyCH4III	ACNGT	2 cut(s)	259, 385
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	6 cut(s)	68, 343, 409, 680, 781, 998
HpyF10VI	GCNNNNNNNGC	3 cut(s)	698, 707, 710
HpyF3I	CTNAG	3 cut(s)	434, 543, 570
HpySE526I	ACGT	1 cut(s)	459
Hsp92I	GRCGYC	1 cut(s)	761
Hsp92II	CATG	9 cut(s)	104, 185, 327, 343, 481, 583, 637, 785, 1002
HspAI	GCGC	1 cut(s)	644
Kzo9I	GATC	1 cut(s)	784
LguI	GCTCTTC	1 cut(s)	364
Lsp1109I	GCAGC	3 cut(s)	476, 697, 713
MaeI	CTAG	1 cut(s)	812
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	3 cut(s)	11, 281, 820
MalI	GATC	1 cut(s)	786
MbiI	CCGCTC	1 cut(s)	357
MboI	GATC	1 cut(s)	784
MboII	GAAGA	8 cut(s)	110, 220, 317, 343, 351, 568, 602, 757
MluCI	AATT	3 cut(s)	188, 849, 861
MlyI	GAGTC	2 cut(s)	553, 579
MnlI	CCTC	8 cut(s)	132, 229, 342, 458, 520, 548, 708, 998
Mph1103I	ATGCAT	2 cut(s)	783, 1000
MseI	TTAA	4 cut(s)	77, 417, 738, 833
MslI	CAYNNNNRTG	1 cut(s)	507
MspCI	CTTAAG	1 cut(s)	416
MspI	CCGG	7 cut(s)	279, 425, 671, 768, 818, 825, 839
MspR9I	CCNGG	4 cut(s)	126, 426, 672, 818
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	698, 707, 710
NciI	CCSGG	3 cut(s)	426, 672, 818
NdeII	GATC	1 cut(s)	784
NlaIII	CATG	9 cut(s)	104, 185, 327, 343, 481, 583, 637, 785, 1002
NlaIV	GGNNCC	1 cut(s)	423
NmeAIII	GCCGAG	1 cut(s)	545
NmuCI	GTSAC	1 cut(s)	281
NsiI	ATGCAT	2 cut(s)	783, 1000
PciSI	GCTCTTC	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	473, 481
PkrI	GCNGC	4 cut(s)	466, 703, 712, 880
PleI	GAGTC	2 cut(s)	553, 579
PpsI	GAGTC	2 cut(s)	553, 579
Ppu21I	YACGTR	1 cut(s)	460
PshAI	GACNNNNGTC	1 cut(s)	597
PsiI	TTATAA	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	124
PspEI	GGTNACC	1 cut(s)	820
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	423
RseI	CAYNNNNRTG	1 cut(s)	507
SapI	GCTCTTC	1 cut(s)	364
SaqAI	TTAA	4 cut(s)	77, 417, 738, 833
SatI	GCNGC	4 cut(s)	465, 702, 711, 879
Sau3AI	GATC	1 cut(s)	784
SchI	GAGTC	2 cut(s)	553, 579
ScrFI	CCNGG	4 cut(s)	126, 426, 672, 818
SmiMI	CAYNNNNRTG	1 cut(s)	507
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	3 cut(s)	188, 849, 861
SsiI	CCGC	3 cut(s)	355, 617, 879
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	1 cut(s)	812
StyD4I	CCNGG	4 cut(s)	124, 424, 670, 816
TaaI	ACNGT	2 cut(s)	259, 385
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	2 cut(s)	486, 588
TasI	AATT	3 cut(s)	188, 849, 861
TauI	GCSGC	1 cut(s)	881
TfiI	GAWTC	2 cut(s)	473, 481
Tru1I	TTAA	4 cut(s)	77, 417, 738, 833
Tru9I	TTAA	4 cut(s)	77, 417, 738, 833
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	3 cut(s)	464, 701, 710
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	9 cut(s)	117, 198, 221, 318, 568, 674, 710, 861, 966
TspRI	CASTG	1 cut(s)	280
Vha464I	CTTAAG	1 cut(s)	416
XapI	RAATTY	1 cut(s)	188
XmiI	GTMKAC	2 cut(s)	32, 764
XspI	CTAG	1 cut(s)	812
Zsp2I	ATGCAT	2 cut(s)	783, 1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.