Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8360525.1

Orthogroup ID

OG0000778

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 889

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8360525.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atggagtccatagttcaggagcatttgaaggctcactggaaaggcaaaagcacagttgagatttacagcctcgctcagctacttgtaacgactctgtcagctcgattcttcactggactccaaaacaataacgaccgttgtgttaagtttgccgaactgattaatatcatagcctcagggctgcatacgttcccaattaatattccaggaaccgagttttatcgagcgatgaaagcagccgaggctatgaggaaggaggttctgttgttgatcaaggagaagaaagcggccgtgtcttccagtggagccaaagtaaccgacatcatgtctcatttgctgtttaacccggatccgactggacggttcataccggagaatgaagttgcagataaggtcatgggtttgatgacgggtggatttcactccccttccatggctacaagttttctcatcaagtttcttggtgaaaaccctaaagtttgtgagaaagtccgaacagaacaattggagattgcaagctcaaaacaagatggtgagaatcttaattgggatgatatacagaaaatgaaatattcttgggctgtagcacttgaagtgatgaggctggtgccacctcttcaaggaacgttcagagaagttgttaccgacttcgcctatgaaggttacacaattccaaaaggatggaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

229

Amino Acids

25.7

Weight (kDa)

7.75

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000778)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26650 FvH4_2g26650 FvH4_3g24410 FvH4_4g26210
malus_domestica	MD13G1029100.v1.1 MD13G1030800.v1.1
prunus_persica	Prupe.1G321100_v2.0.a1
pyrus_communis	pycom16g02780
rosa_chinensis	RchiOBHm_Chr2g0129461 RchiOBHm_Chr4g0393701 RchiOBHm_Chr4g0393721 RchiOBHm_Chr4g0393731 RchiOBHm_Chr4g0393751 RchiOBHm_Chr4g0393771 RchiOBHm_Chr4g0393831 RchiOBHm_Chr4g0433371 RchiOBHm_Chr4g0433791 RchiOBHm_Chr4g0433841 RchiOBHm_Chr4g0433851
rosa_laevigata	RLG00000006723 RLG00000006725 RLG00000006727 RLG00000006729 RLG00000006730 RLG00000006759 RLG00000009732 RLG00000009733 RLG00000009734 RLG00000019082
rosa_multiflora	Rmu_co8360525.1_g000001 Rmu_sc0000759.1_g000012 Rmu_sc0000928.1_g000012 Rmu_sc0000928.1_g000019 Rmu_sc0000999.1_g000012 Rmu_sc0002912.1_g000012 Rmu_sc0002912.1_g000013 Rmu_sc0002912.1_g000023 Rmu_sc0002912.1_g000032 Rmu_sc0006151.1_g000001 Rmu_ssc0000164.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114580 Rroxscaffold_5G00338900 Rroxscaffold_5G00338920 Rroxscaffold_5G00339220 Rroxscaffold_5G00375230 Rroxscaffold_5G00375250
rosa_rugosa	Rorug02G0286700 Rorug03G0371300 Rorug04G0271600 Rorug04G0271600 Rorug04G0271700
rosa_samantha	Rh2BG346900 Rh4AG048800 Rh4AG048900 Rh4AG323000 Rh4AG326200 Rh4AG326400 Rh4AG326500 Rh4CG052100 Rh4CG052200 Rh4CG349500 Rh4CG349600
rosa_wichuraiana	Rw0G021530 Rw2G027930 Rw4G003870 Rw4G003880 Rw4G027970 Rw4G028250 Rw4G028260 Rw4G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	607
AciI	CCGC	1 cut(s)	287
AclI	AACGTT	1 cut(s)	626
AclWI	GGATC	2 cut(s)	344, 357
AcoI	YGGCCR	1 cut(s)	288
AfiI	CCNNNNNNNGG	2 cut(s)	433, 620
AgsI	TTSAA	3 cut(s)	28, 593, 620
AhdI	GACNNNNNGTC	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	3 cut(s)	79, 101, 519
AluI	AGCT	3 cut(s)	79, 101, 519
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	2 cut(s)	344, 357
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	2 cut(s)	181, 236
AseI	ATTAAT	2 cut(s)	162, 198
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	476, 545
AxyI	CCTNAGG	1 cut(s)	175
BamHI	GGATCC	1 cut(s)	349
BanI	GGYRCC	1 cut(s)	607
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	168, 248
BccI	CCATC	2 cut(s)	524, 675
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	207
BclI	TGATCA	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	582
BisI	GCNGC	3 cut(s)	182, 237, 288
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	3 cut(s)	183, 238, 289
Bme1390I	CCNGG	2 cut(s)	207, 347
BmeRI	GACNNNNNGTC	1 cut(s)	325
BmiI	GGNNCC	4 cut(s)	211, 307, 351, 609
BmrFI	CCNGG	2 cut(s)	207, 347
BpiI	GAAGAC	1 cut(s)	288
Bpu1102I	GCTNAGC	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	240, 432
BsaWI	WCCGGW	1 cut(s)	370
BsaXI	ACNNNNNCTCC	4 cut(s)	248, 278, 297, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 620
Bse1I	ACTGG	4 cut(s)	41, 118, 300, 361
Bse21I	CCTNAGG	1 cut(s)	175
Bse8I	GATNNNNATC	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	240, 432
BseGI	GGATG	2 cut(s)	556, 686
BseJI	GATNNNNATC	1 cut(s)	164
BseLI	CCNNNNNNNGG	2 cut(s)	433, 620
BseMII	CTCAG	2 cut(s)	89, 189
BseNI	ACTGG	4 cut(s)	41, 118, 300, 361
BseX3I	CGGCCG	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	168, 248
Bsh1285I	CGRYCG	2 cut(s)	136, 291
BshFI	GGCC	1 cut(s)	290
BshNI	GGYRCC	1 cut(s)	607
BsiEI	CGRYCG	2 cut(s)	136, 291
BsiSI	CCGG	2 cut(s)	347, 371
BslI	CCNNNNNNNGG	2 cut(s)	433, 620
BsmAI	GTCTC	1 cut(s)	333
BsnI	GGCC	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	270, 349
Bsp1720I	GCTNAGC	1 cut(s)	75
Bsp19I	CCATGG	1 cut(s)	432
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	2 cut(s)	88, 188
BspLI	GGNNCC	4 cut(s)	211, 307, 351, 609
BspPI	GGATC	2 cut(s)	344, 357
BspT107I	GGYRCC	1 cut(s)	607
BsrI	ACTGG	4 cut(s)	41, 118, 300, 361
BssECI	CCNNGG	2 cut(s)	240, 432
BssMI	GATC	2 cut(s)	270, 349
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	3 cut(s)	55, 137, 363
Bst6I	CTCTTC	1 cut(s)	621
BstC8I	GCNNGC	1 cut(s)	517
BstDEI	CTNAG	2 cut(s)	75, 175
BstDSI	CCRYGG	1 cut(s)	432
BstENI	CCTNNNNNAGG	1 cut(s)	618
BstF5I	GGATG	2 cut(s)	556, 686
BstKTI	GATC	2 cut(s)	273, 352
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	2 cut(s)	270, 349
BstMCI	CGRYCG	2 cut(s)	136, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 242
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	205, 345
BstSFI	CTRYAG	1 cut(s)	582
BstV1I	GCAGC	2 cut(s)	168, 248
BstV2I	GAAGAC	1 cut(s)	288
BstX2I	RGATCY	1 cut(s)	349
BstXI	CCANNNNNNTGG	1 cut(s)	681
BstYI	RGATCY	1 cut(s)	349
BstZI	CGGCCG	1 cut(s)	288
Bsu36I	CCTNAGG	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	432
BtgZI	GCGATG	1 cut(s)	242
BtsCI	GGATG	2 cut(s)	556, 686
BtsIMutI	CAGTG	3 cut(s)	34, 111, 307
Cac8I	GCNNGC	1 cut(s)	517
CviAII	CATG	3 cut(s)	325, 397, 433
DdeI	CTNAG	2 cut(s)	75, 175
DpnI	GATC	2 cut(s)	272, 351
DpnII	GATC	2 cut(s)	270, 349
DriI	GACNNNNNGTC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	288
EagI	CGGCCG	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	621
Eam1105I	GACNNNNNGTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	621
EclXI	CGGCCG	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	432
Eco52I	CGGCCG	1 cut(s)	288
Eco81I	CCTNAGG	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	618
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	3 cut(s)	328, 400, 436
FatI	CATG	3 cut(s)	324, 396, 432
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	3 cut(s)	182, 237, 288
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	3 cut(s)	182, 237, 288
GluI	GCNGC	3 cut(s)	182, 237, 288
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	2 cut(s)	347, 371
Hin1II	CATG	3 cut(s)	328, 400, 436
HinfI	GANTC	5 cut(s)	5, 91, 105, 117, 538
HpaII	CCGG	2 cut(s)	347, 371
HphI	GGTGA	2 cut(s)	476, 545
Hpy188I	TCNGA	3 cut(s)	354, 494, 632
Hpy188III	TCNNGA	1 cut(s)	17
HpyAV	CCTTC	4 cut(s)	22, 247, 438, 653
HpyCH4III	ACNGT	3 cut(s)	55, 137, 363
HpyCH4IV	ACGT	2 cut(s)	188, 626
HpyCH4V	TGCA	3 cut(s)	184, 386, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 242
HpyF3I	CTNAG	2 cut(s)	75, 175
HpySE526I	ACGT	2 cut(s)	188, 626
Hsp92II	CATG	3 cut(s)	328, 400, 436
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	270, 349
LmnI	GCTCC	2 cut(s)	19, 305
Lsp1109I	GCAGC	2 cut(s)	168, 248
MaeII	ACGT	2 cut(s)	188, 626
MaeIII	GTNAC	4 cut(s)	85, 313, 640, 662
MalI	GATC	2 cut(s)	272, 351
MboI	GATC	2 cut(s)	270, 349
MboII	GAAGA	4 cut(s)	100, 288, 292, 608
MfeI	CAATTG	1 cut(s)	503
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	4 cut(s)	195, 503, 544, 669
MlyI	GAGTC	3 cut(s)	14, 85, 111
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	7 cut(s)	80, 184, 235, 243, 250, 594, 624
MseI	TTAA	5 cut(s)	144, 162, 198, 342, 543
MspI	CCGG	2 cut(s)	347, 371
MspR9I	CCNGG	2 cut(s)	207, 347
MunI	CAATTG	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	233, 242
NciI	CCSGG	1 cut(s)	347
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	2 cut(s)	270, 349
NlaIII	CATG	3 cut(s)	328, 400, 436
NlaIV	GGNNCC	4 cut(s)	211, 307, 351, 609
NmeAIII	GCCGAG	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	105, 538
PflFI	GACNNNGTC	1 cut(s)	94
PfoI	TCCNGGA	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	183, 238, 289
PleI	GAGTC	3 cut(s)	13, 85, 111
PpsI	GAGTC	3 cut(s)	13, 85, 111
PshBI	ATTAAT	2 cut(s)	162, 198
Psp1406I	AACGTT	1 cut(s)	626
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	4 cut(s)	211, 307, 351, 609
PsuI	RGATCY	1 cut(s)	349
PsyI	GACNNNGTC	1 cut(s)	94
SaqAI	TTAA	5 cut(s)	144, 162, 198, 342, 543
SatI	GCNGC	3 cut(s)	182, 237, 288
Sau3AI	GATC	2 cut(s)	270, 349
SchI	GAGTC	3 cut(s)	14, 85, 111
ScrFI	CCNGG	2 cut(s)	207, 347
SetI	ASST	9 cut(s)	81, 103, 191, 261, 396, 521, 616, 629, 664
SfcI	CTRYAG	1 cut(s)	582
Sse9I	AATT	4 cut(s)	195, 503, 544, 669
SsiI	CCGC	1 cut(s)	287
SspI	AATATT	2 cut(s)	202, 572
StyD4I	CCNGG	2 cut(s)	205, 345
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	3 cut(s)	55, 137, 363
TaiI	ACGT	2 cut(s)	191, 629
TaqI	TCGA	2 cut(s)	103, 223
TasI	AATT	4 cut(s)	195, 503, 544, 669
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	2 cut(s)	105, 538
Tru1I	TTAA	5 cut(s)	144, 162, 198, 342, 543
Tru9I	TTAA	5 cut(s)	144, 162, 198, 342, 543
TscAI	CASTG	3 cut(s)	41, 118, 307
TseI	GCWGC	2 cut(s)	181, 236
TspDTI	ATGAA	5 cut(s)	245, 355, 393, 581, 672
TspRI	CASTG	3 cut(s)	41, 118, 307
Tth111I	GACNNNGTC	1 cut(s)	94
VspI	ATTAAT	2 cut(s)	162, 198
XagI	CCTNNNNNAGG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.