RchiOBHm_Chr7g0211921

RNA-binding protein NOB1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001896
Physical Location & Seq
Reverse (-)
29128810 .. 29130508
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18959

Sequence Viewer

Length: 1269 bp
ATGAGTTTTGTTAAGTTTGCGAGGGCTACTGGGGATTTACAGACACTGTCAGATGTGGATGTTAAGCTCATTGCTATGACTTATACATTGGAGGCTCAGATACATGGCACTGAGCACCTCAGGGACTGTCCTCCGCCGGTGCATACTGTCAATGTGAGGAGGTTGCCGGAGAAGGACTTGCCCGGGTGGGGAAATAATGTGCCTAATTTGGAAGAGTGGGAAGCGCTGGAGAACGAAGCGGAGGATAAGTTGAACCCCAGTTCGAGGATTCTTCCGCTGAAAGATATAAACTTGAATGTTATTGAGGATTCTGAGAGTCGTTCTGTTGATGGTTCTGCCGTGGAAGTTACGAGTGATGTTCGTTCTGAGAATCAGGAGGGTGGTGAGGGCATTCAGGGGAGACATAGGAGATATTTTCCAAAGAAGAAAGAGATAAAGATTGAAGGAAAGATGGTTTCGGATGGAATTGATGCATCCCAAGGACAAGCTGATGATAATGCGGGTGATTGGATGCCTGCCGTCAGTCGGAGTACACATAGAAGGTTTTTGAGAAGAAAAGCAAGACGTGAGTCTTATGAGGCATCGGCTGATAATGATTCTCAGCAAGATGCTGAGGAAAACACCAGTGGTGACGTACTTGTAGATGCTAGGAGCCAGGATCAAACATCGCCTTCTAAATTTGAAGAGGCATGTTGCAGACCTGTGGAGAGTGAGATGACAGAAGAGAAGAATTTTGATGAAGATCTTTCCTCAATCCTTGAGCAAACAAGGCGTGATGAAGATTCACTAAGGGCTCTTCAAAAAGGGAAGGAGCAGCATGGGGTTGAGGATAATGATTTCAAAGCAGGGGAAAGCACTTCTGATAACAGTGTGAATTTTGCTGTTGAGGGAGATGAGGTTGAAGTGATAAATGAAGGTCTGGATCACTTGGAGATCTCAAGTCATAATGATGGTAGTGTTGATACATCAAATGTTAACGATGATAGCAGTGAGCAGAGCTGGATGCTGCGATCCTTATCTGAGTCTAGTGTAGCATGTATAACAAGTGATTTTGCAATGCAAAATGTTATTCTGCAGATGGGTTTACGGTTGTTGGCACCAGGAGGAATGCAGATCCGCCAGCTGCACAGGTGGATTTTGAAATGCCATGCTTGTAACACTGTGACTGCTGAAATTGGGAGAATATTTTGTGATGGAGTTTCTATCCCACGTCTCATGTACACTAGTGTAAGTTTCATAGAGCTCTATATTCTCAGGAATAGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOB1_Zn_bind PIN_6

Protein Analysis

422

Amino Acids

47.3

Weight (kDa)

4.71

Isoelectric Point (pI)

67.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_NOB1 PF08772 372 - 401 1.5e-06 Nin one binding (NOB1) Zn-ribbon like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1096
AciI CCGC 5 cut(s) 134, 239, 275, 500, 1117
AclWI GGATC 4 cut(s) 666, 930, 1005, 1108
AcsI RAATTY 3 cut(s) 677, 730, 874
AfaI GTAC 3 cut(s) 532, 636, 1220
AfeI AGCGCT 1 cut(s) 225
AfiI CCNNNNNNNGG 3 cut(s) 188, 264, 525
AgsI TTSAA 8 cut(s) 253, 295, 443, 683, 800, 841, 902, 1141
AhlI ACTAGT 1 cut(s) 1223
AjiI CACGTC 2 cut(s) 566, 1211
AjnI CCWGG 2 cut(s) 654, 1099
AluBI AGCT 5 cut(s) 67, 488, 999, 1123, 1243
AluI AGCT 5 cut(s) 67, 488, 999, 1123, 1243
Alw21I GWGCWC 2 cut(s) 117, 1245
Alw26I GTCTC 2 cut(s) 394, 1217
AlwI GGATC 4 cut(s) 666, 930, 1005, 1108
AlwNI CAGNNNCTG 2 cut(s) 46, 126
Ama87I CYCGRG 1 cut(s) 182
Aor51HI AGCGCT 1 cut(s) 225
ApeKI GCWGC 3 cut(s) 814, 1006, 1123
ApoI RAATTY 3 cut(s) 677, 730, 874
Asp700I GAANNNNTTC 1 cut(s) 1262
AspLEI GCGC 1 cut(s) 226
AsuC2I CCSGG 2 cut(s) 183, 184
AsuHPI GGTGA 3 cut(s) 395, 515, 641
AvaI CYCGRG 1 cut(s) 182
AxyI CCTNAGG 1 cut(s) 119
BanI GGYRCC 1 cut(s) 1096
BanII GRGCYC 2 cut(s) 796, 1245
Bbv12I GWGCWC 2 cut(s) 117, 1245
BbvCI CCTCAGC 1 cut(s) 612
BbvI GCAGC 3 cut(s) 826, 993, 1110
BccI CCATC 6 cut(s) 323, 445, 455, 944, 1072, 1187
BceAI ACGGC 2 cut(s) 323, 503
BciT130I CCWGG 2 cut(s) 656, 1101
BcnI CCSGG 2 cut(s) 183, 184
BcoDI GTCTC 2 cut(s) 394, 1217
BcuI ACTAGT 1 cut(s) 1223
BfaI CTAG 3 cut(s) 648, 1026, 1224
BfmI CTRYAG 1 cut(s) 1073
BfoI RGCGCY 1 cut(s) 227
BglII AGATCT 2 cut(s) 742, 933
BisI GCNGC 3 cut(s) 815, 1007, 1124
BlsI GCNGC 3 cut(s) 816, 1008, 1125
Bme1390I CCNGG 4 cut(s) 183, 184, 656, 1101
BmeT110I CYCGRG 1 cut(s) 182
BmgBI CACGTC 2 cut(s) 566, 1211
BmiI GGNNCC 2 cut(s) 653, 1098
BmrFI CCNGG 4 cut(s) 183, 184, 656, 1101
BmrI ACTGGG 2 cut(s) 39, 252
BmsI GCATC 7 cut(s) 460, 482, 501, 590, 598, 634, 993
BmuI ACTGGG 2 cut(s) 39, 252
BoxI GACNNNNGTC 1 cut(s) 568
BpmI CTGGAG 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 612
BpuEI CTTGAG 2 cut(s) 779, 922
BpuMI CCSGG 2 cut(s) 183, 184
BsaBI GATNNNNATC 2 cut(s) 741, 1015
BsaJI CCNNGG 3 cut(s) 182, 339, 478
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 882, 912
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 264, 525
Bse118I RCCGGY 1 cut(s) 136
Bse1I ACTGG 3 cut(s) 34, 258, 624
Bse21I CCTNAGG 1 cut(s) 119
Bse3DI GCAATG 2 cut(s) 69, 1062
Bse8I GATNNNNATC 2 cut(s) 741, 1015
BseBI CCWGG 2 cut(s) 656, 1101
BseDI CCNNGG 3 cut(s) 182, 339, 478
BseGI GGATG 5 cut(s) 64, 466, 473, 516, 1008
BseJI GATNNNNATC 2 cut(s) 741, 1015
BseLI CCNNNNNNNGG 3 cut(s) 188, 264, 525
BseMI GCAATG 2 cut(s) 69, 1062
BseMII CTCAG 9 cut(s) 102, 110, 133, 303, 357, 603, 614, 1011, 1267
BseNI ACTGG 3 cut(s) 34, 258, 624
BseRI GAGGAG 1 cut(s) 172
BseXI GCAGC 3 cut(s) 826, 993, 1110
BsgI GTGCAG 1 cut(s) 1109
BshNI GGYRCC 1 cut(s) 1096
BsiHKAI GWGCWC 2 cut(s) 117, 1245
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 3 cut(s) 137, 167, 183
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 188, 264, 525
BsmAI GTCTC 2 cut(s) 394, 1217
BsmBI CGTCTC 1 cut(s) 1217
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 2 cut(s) 390, 1113
BsoBI CYCGRG 1 cut(s) 182
Bsp1286I GDGCHC 3 cut(s) 117, 796, 1245
Bsp1407I TGTACA 1 cut(s) 1218
Bsp143I GATC 6 cut(s) 658, 742, 922, 933, 1010, 1113
BspACI CCGC 5 cut(s) 134, 239, 275, 500, 1117
BspCNI CTCAG 9 cut(s) 103, 109, 132, 304, 358, 604, 613, 1012, 1266
BspLI GGNNCC 2 cut(s) 653, 1098
BspMAI CTGCAG 1 cut(s) 1077
BspPI GGATC 4 cut(s) 666, 930, 1005, 1108
BspQI GCTCTTC 1 cut(s) 801
BspT107I GGYRCC 1 cut(s) 1096
BsrDI GCAATG 2 cut(s) 69, 1062
BsrFI RCCGGY 1 cut(s) 136
BsrGI TGTACA 1 cut(s) 1218
BsrI ACTGG 3 cut(s) 34, 258, 624
BssAI RCCGGY 1 cut(s) 136
BssECI CCNNGG 3 cut(s) 182, 339, 478
BssMI GATC 6 cut(s) 658, 742, 922, 933, 1010, 1113
BssT1I CCWWGG 1 cut(s) 478
Bst2UI CCWGG 2 cut(s) 656, 1101
Bst4CI ACNGT 6 cut(s) 48, 128, 148, 869, 1089, 1162
Bst6I CTCTTC 4 cut(s) 207, 678, 717, 801
BstAUI TGTACA 1 cut(s) 1218
BstC8I GCNNGC 2 cut(s) 516, 1121
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 5 cut(s) 64, 466, 473, 516, 1008
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 6 cut(s) 661, 745, 925, 936, 1013, 1116
BstMAI GTCTC 2 cut(s) 394, 1217
BstMBI GATC 6 cut(s) 658, 742, 922, 933, 1010, 1113
BstMWI GCNNNNNNNGC 1 cut(s) 769
BstNI CCWGG 2 cut(s) 656, 1101
BstNSI RCATGY 2 cut(s) 693, 1038
BstPAI GACNNNNGTC 1 cut(s) 568
BstSCI CCNGG 4 cut(s) 181, 182, 654, 1099
BstSFI CTRYAG 1 cut(s) 1073
BstV1I GCAGC 3 cut(s) 826, 993, 1110
BstX2I RGATCY 3 cut(s) 742, 933, 1113
BstYI RGATCY 3 cut(s) 742, 933, 1113
Bsu36I CCTNAGG 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 339
BtgZI GCGATG 1 cut(s) 651
BtrI CACGTC 2 cut(s) 566, 1211
BtsCI GGATG 5 cut(s) 64, 466, 473, 516, 1008
BtsI GCAGTG 1 cut(s) 994
BtsIMutI CAGTG 6 cut(s) 44, 108, 631, 874, 994, 1158
Cac8I GCNNGC 2 cut(s) 516, 1121
CaiI CAGNNNCTG 2 cut(s) 46, 126
CfoI GCGC 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 136
Cfr9I CCCGGG 1 cut(s) 182
Csp6I GTAC 3 cut(s) 531, 635, 1219
CviAII CATG 6 cut(s) 104, 690, 818, 1035, 1148, 1216
CviQI GTAC 3 cut(s) 531, 635, 1219
DpnI GATC 6 cut(s) 660, 744, 924, 935, 1012, 1115
DpnII GATC 6 cut(s) 658, 742, 922, 933, 1010, 1113
Eam1104I CTCTTC 4 cut(s) 207, 678, 717, 801
EarI CTCTTC 4 cut(s) 207, 678, 717, 801
EciI GGCGGA 2 cut(s) 123, 1106
Ecl136II GAGCTC 1 cut(s) 1243
Eco130I CCWWGG 1 cut(s) 478
Eco24I GRGCYC 2 cut(s) 796, 1245
Eco47III AGCGCT 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 1243
Eco81I CCTNAGG 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 1243
EcoRII CCWGG 2 cut(s) 654, 1099
EcoT14I CCWWGG 1 cut(s) 478
EcoT22I ATGCAT 1 cut(s) 475
EcoT38I GRGCYC 2 cut(s) 796, 1245
ErhI CCWWGG 1 cut(s) 478
Esp3I CGTCTC 1 cut(s) 1217
FaeI CATG 6 cut(s) 107, 693, 821, 1038, 1151, 1219
FaqI GGGAC 1 cut(s) 137
FatI CATG 6 cut(s) 103, 689, 817, 1034, 1147, 1215
FauI CCCGC 1 cut(s) 493
Fnu4HI GCNGC 3 cut(s) 815, 1007, 1124
FokI GGATG 5 cut(s) 71, 460, 473, 523, 1015
FriOI GRGCYC 2 cut(s) 796, 1245
Fsp4HI GCNGC 3 cut(s) 815, 1007, 1124
FspBI CTAG 3 cut(s) 648, 1026, 1224
GlaI GCGC 1 cut(s) 225
GluI GCNGC 3 cut(s) 815, 1007, 1124
GsuI CTGGAG 1 cut(s) 248
HaeII RGCGCY 1 cut(s) 227
HapII CCGG 3 cut(s) 137, 167, 183
HhaI GCGC 1 cut(s) 226
Hin1II CATG 6 cut(s) 107, 693, 821, 1038, 1151, 1219
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HincII GTYRAC 1 cut(s) 976
HindII GTYRAC 1 cut(s) 976
HinfI GANTC 8 cut(s) 268, 308, 316, 370, 569, 596, 782, 1022
HpaI GTTAAC 1 cut(s) 976
HpaII CCGG 3 cut(s) 137, 167, 183
HphI GGTGA 3 cut(s) 395, 515, 641
Hpy166II GTNNAC 4 cut(s) 533, 976, 1085, 1221
Hpy188I TCNGA 9 cut(s) 52, 99, 313, 367, 460, 528, 862, 1021, 1268
Hpy188III TCNNGA 3 cut(s) 374, 920, 1255
Hpy8I GTNNAC 4 cut(s) 533, 976, 1085, 1221
HpyAV CCTTC 6 cut(s) 166, 437, 534, 681, 802, 908
HpyCH4III ACNGT 6 cut(s) 48, 128, 148, 869, 1089, 1162
HpyCH4IV ACGT 3 cut(s) 565, 633, 1210
HpyCH4V TGCA 8 cut(s) 142, 473, 696, 1055, 1060, 1075, 1111, 1126
HpyF10VI GCNNNNNNNGC 1 cut(s) 769
HpySE526I ACGT 3 cut(s) 565, 633, 1210
Hsp92II CATG 6 cut(s) 107, 693, 821, 1038, 1151, 1219
HspAI GCGC 1 cut(s) 224
KspAI GTTAAC 1 cut(s) 976
Kzo9I GATC 6 cut(s) 658, 742, 922, 933, 1010, 1113
LguI GCTCTTC 1 cut(s) 801
LmnI GCTCC 2 cut(s) 651, 811
Lsp1109I GCAGC 3 cut(s) 826, 993, 1110
LweI GCATC 7 cut(s) 460, 482, 501, 590, 598, 634, 993
MaeI CTAG 3 cut(s) 648, 1026, 1224
MaeII ACGT 3 cut(s) 565, 633, 1210
MaeIII GTNAC 4 cut(s) 346, 629, 1154, 1162
MalI GATC 6 cut(s) 660, 744, 924, 935, 1012, 1115
MboI GATC 6 cut(s) 658, 742, 922, 933, 1010, 1113
MflI RGATCY 3 cut(s) 742, 933, 1113
MhlI GDGCHC 3 cut(s) 117, 796, 1245
MluCI AATT 6 cut(s) 205, 465, 677, 730, 874, 1173
MlyI GAGTC 3 cut(s) 325, 578, 1031
MmeI TCCRAC 1 cut(s) 506
Mph1103I ATGCAT 1 cut(s) 475
MroXI GAANNNNTTC 1 cut(s) 1262
MseI TTAA 3 cut(s) 12, 63, 975
MslI CAYNNNNRTG 2 cut(s) 74, 948
MspA1I CMGCKG 2 cut(s) 277, 1123
MspI CCGG 3 cut(s) 137, 167, 183
MspR9I CCNGG 4 cut(s) 183, 184, 656, 1101
Mva1269I GAATGC 2 cut(s) 390, 1113
MvaI CCWGG 2 cut(s) 656, 1101
MwoI GCNNNNNNNGC 1 cut(s) 769
NciI CCSGG 2 cut(s) 183, 184
NdeII GATC 6 cut(s) 658, 742, 922, 933, 1010, 1113
NlaIII CATG 6 cut(s) 107, 693, 821, 1038, 1151, 1219
NlaIV GGNNCC 2 cut(s) 653, 1098
NmuCI GTSAC 2 cut(s) 629, 1162
NsiI ATGCAT 1 cut(s) 475
NspI RCATGY 2 cut(s) 693, 1038
PciSI GCTCTTC 1 cut(s) 801
PctI GAATGC 2 cut(s) 390, 1113
PdmI GAANNNNTTC 1 cut(s) 1262
PfeI GAWTC 5 cut(s) 268, 308, 370, 596, 782
PflFI GACNNNGTC 1 cut(s) 46
PkrI GCNGC 3 cut(s) 816, 1008, 1125
PleI GAGTC 3 cut(s) 324, 577, 1030
PpsI GAGTC 3 cut(s) 324, 577, 1030
PshAI GACNNNNGTC 1 cut(s) 568
Psp124BI GAGCTC 1 cut(s) 1245
Psp6I CCWGG 2 cut(s) 654, 1099
PspGI CCWGG 2 cut(s) 654, 1099
PspN4I GGNNCC 2 cut(s) 653, 1098
PstI CTGCAG 1 cut(s) 1077
PstNI CAGNNNCTG 2 cut(s) 46, 126
PsuI RGATCY 3 cut(s) 742, 933, 1113
PsyI GACNNNGTC 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 1123
RsaI GTAC 3 cut(s) 532, 636, 1220
RsaNI GTAC 3 cut(s) 531, 635, 1219
RseI CAYNNNNRTG 2 cut(s) 74, 948
SacI GAGCTC 1 cut(s) 1245
SapI GCTCTTC 1 cut(s) 801
SaqAI TTAA 3 cut(s) 12, 63, 975
SatI GCNGC 3 cut(s) 815, 1007, 1124
Sau3AI GATC 6 cut(s) 658, 742, 922, 933, 1010, 1113
SchI GAGTC 3 cut(s) 325, 578, 1031
ScrFI CCNGG 4 cut(s) 183, 184, 656, 1101
SduI GDGCHC 3 cut(s) 117, 796, 1245
SfaNI GCATC 7 cut(s) 460, 482, 501, 590, 598, 634, 993
SfcI CTRYAG 1 cut(s) 1073
SgrAI CRCCGGYG 1 cut(s) 136
SmaI CCCGGG 1 cut(s) 184
SmiMI CAYNNNNRTG 2 cut(s) 74, 948
SmlI CTYRAG 2 cut(s) 758, 937
SmoI CTYRAG 2 cut(s) 758, 937
SpeI ACTAGT 1 cut(s) 1223
Sse9I AATT 6 cut(s) 205, 465, 677, 730, 874, 1173
SsiI CCGC 5 cut(s) 134, 239, 275, 500, 1117
SspI AATATT 1 cut(s) 1185
SspMI CTAG 3 cut(s) 648, 1026, 1224
SstI GAGCTC 1 cut(s) 1245
StyD4I CCNGG 4 cut(s) 181, 182, 654, 1099
StyI CCWWGG 1 cut(s) 478
TaaI ACNGT 6 cut(s) 48, 128, 148, 869, 1089, 1162
TaiI ACGT 3 cut(s) 568, 636, 1213
TaqI TCGA 1 cut(s) 263
TasI AATT 6 cut(s) 205, 465, 677, 730, 874, 1173
TatI WGTACW 2 cut(s) 530, 1218
TfiI GAWTC 5 cut(s) 268, 308, 370, 596, 782
Tru1I TTAA 3 cut(s) 12, 63, 975
Tru9I TTAA 3 cut(s) 12, 63, 975
TscAI CASTG 6 cut(s) 51, 115, 631, 874, 994, 1165
TseFI GTSAC 2 cut(s) 629, 1162
TseI GCWGC 3 cut(s) 814, 1006, 1123
Tsp45I GTSAC 2 cut(s) 629, 1162
TspDTI ATGAA 4 cut(s) 753, 792, 927, 1225
TspMI CCCGGG 1 cut(s) 182
TspRI CASTG 6 cut(s) 51, 115, 631, 874, 994, 1165
Tth111I GACNNNGTC 1 cut(s) 46
XapI RAATTY 3 cut(s) 677, 730, 874
XceI RCATGY 2 cut(s) 693, 1038
XmaI CCCGGG 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 1262
XspI CTAG 3 cut(s) 648, 1026, 1224
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.