Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001896

Physical Location & Seq

Genomic Coordinates Reverse (-)

11417964 .. 11420169

Gene Structure 2206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG125600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCCACCAGCAAAGTATTCGTCGGAAGCTGCAAGTCCTCTACGGGCATAGCCGTGGCCGTCGTAGATGCCAATGCTATAATTCAAGGCGGCGAGAGCCTCGGCCACTGTGCCGACAAGTTCGTCTCCGTCCCCGAAGTCATGGACGAGGTCCATGACCCTATTTCCCGCCACCGCCTCGCCGTCGTTCCGTTCCAAGTCCAGACCATGGAACCCTCCCCTGAATCCCTCAATAAAGTTATTAAGTTTGCGAGGGCTACTGGGGATTTACGGACACTGTCAGATGTGGATGTTAAGCTCATTGCTATGACTTATACATTGGAGGATCAGATACATGGCACTGAGCACCTCAGGGACTGTCCTCCGCCTGTGCATGCTATCCACAATTCGAAGATTCTTCCGTTGAAAGATATAAACATGAATGTTATCCATGATTCTGAGAGCCCTTCTGTTCATTCTGAGAATCAGGAGGGTGGTGAGGGGAGCCATAGGAGATATTTTCCAAAGAAGAAAGAGATAATAAAGATTGAAGGGGAGATAGTTTCTGACAGAATCGATGCGTTCCAAGGACAAGTAGATGATAATGCCGGTGATTGGATGCCTGTCGTCAGTCCGAGTACACATAGAAGGTTTTTGAGGAGAAAAGGTAAACGTGAGTCTTATGAGGCTTCGGCTGATAATATTTCTCAGCAAGATGCTGAGGAAAACACAAGTGGTGACCTACTTGTGGATCAAACATCGGCTTCTAAATTTTGCAGACCTGTGGAGGGTGAGATGACAGAGGAGAAGAATTGTGATGAAGATCTTTCCTCAATCCTCGAGCAAACAAGGCGTGATGAAGATTCAATTAGGGTTCTTCAAAAAGGGAAGGAGCAGAATGGGGTTGAGGATAATGATTTCAAAGCAGGGGAAAGCACTTCTGATAACGGTGTGAATTTTTCTGTTGAAGGATATGAGATGGGTTTACGGTTGTTGGCACCTCGAGGAATGCAGATCCACCAGCTGCACAGGTGGATTTTGAAATGTCATGCTTGTAATACTGTGACTGCTGAAATTGGGAGAATGTTCTGTCCGAAGTGTGGAAATGGCGGTACCTTGAGCAAGGTAGCAGTTACAGTGGGTGAGAATGGGATTATTCTTGCCCGTAAGCCTCGGATCACGTTGCGTGGCACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

NOB1_Zn_bind PIN_6

Protein Analysis

392

Amino Acids

43.27

Weight (kDa)

5.73

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIN_6	PF17146	21 - 107	1.7e-24	PIN domain of ribonuclease
Zn_ribbon_NOB1	PF08772	332 - 392	1.8e-17	Nin one binding (NOB1) Zn-ribbon like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41190
fragaria_vesca	FvH4_5g23090
malus_domestica	MD14G1101800.v1.1
prunus_persica	Prupe.5G097400_v2.0.a1
pyrus_communis	pycom06g07650 pycom14g09860
rosa_chinensis	RchiOBHm_Chr2g0099081 RchiOBHm_Chr7g0179141 RchiOBHm_Chr7g0211871 RchiOBHm_Chr7g0211921 RchiOBHm_Chr7g0211961
rosa_laevigata	RLG00000002953 RLG00000002956 RLG00000005381 RLG00000016846 RLG00000021575
rosa_multiflora	Rmu_sc0000888.1_g000019 Rmu_sc0009005.1_g000003 Rmu_sc0017524.1_g000001 Rmu_sc0018807.1_g000007 Rmu_sc0022966.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143460 Rroxscaffold_3G00247290 Rroxscaffold_3G00247320 Rroxscaffold_3G00274270 Rroxscaffold_3G00274340
rosa_rugosa	Rorug02G0076500 Rorug06G0421300 Rorug07G0129500 Rorug07G0129600
rosa_samantha	Rh2AG125600 Rh2BG128900 Rh2CG129900 Rh2DG130300 Rh7AG020500 Rh7AG262400 Rh7BG020600 Rh7BG255900 Rh7CG021700 Rh7CG278400 Rh7DG021100 Rh7DG268900 Rh7DG269200
rosa_wichuraiana	Rw7G001720 Rw7G022370 Rw7G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AbsI	CCTCGAGG	1 cut(s)	981
Acc65I	GGTACC	1 cut(s)	1091
AccB1I	GGYRCC	2 cut(s)	976, 1091
AccB7I	CCANNNNNTGG	1 cut(s)	208
AciI	CCGC	5 cut(s)	90, 169, 175, 365, 1089
AclWI	GGATC	4 cut(s)	333, 738, 988, 1163
AcoI	YGGCCR	3 cut(s)	3, 57, 103
AcsI	RAATTY	2 cut(s)	749, 934
AfaI	GTAC	2 cut(s)	619, 1093
AfiI	CCNNNNNNNGG	5 cut(s)	208, 594, 727, 767, 1079
AgsI	TTSAA	8 cut(s)	86, 406, 530, 846, 860, 901, 947, 1021
AluBI	AGCT	3 cut(s)	30, 298, 1003
AluI	AGCT	3 cut(s)	30, 298, 1003
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	4 cut(s)	333, 738, 988, 1163
AlwNI	CAGNNNCTG	1 cut(s)	357
Ama87I	CYCGRG	2 cut(s)	818, 981
AoxI	GGCC	3 cut(s)	3, 57, 103
ApeKI	GCWGC	2 cut(s)	30, 1003
ApoI	RAATTY	2 cut(s)	749, 934
ArsI	GACNNNNNNTTYG	1 cut(s)	38
Asp718I	GGTACC	1 cut(s)	1091
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	5 cut(s)	488, 602, 728, 782, 1133
AsuII	TTCGAA	1 cut(s)	389
AvaI	CYCGRG	2 cut(s)	818, 981
AvaII	GGWCC	1 cut(s)	151
AxyI	CCTNAGG	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	976, 1091
BanII	GRGCYC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	348
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	2 cut(s)	17, 990
BccI	CCATC	1 cut(s)	952
BceAI	ACGGC	3 cut(s)	38, 44, 167
BcgI	CGANNNNNNTGC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	130
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	3 cut(s)	31, 91, 1004
BlsI	GCNGC	3 cut(s)	32, 92, 1005
Bme18I	GGWCC	1 cut(s)	151
BmeT110I	CYCGRG	2 cut(s)	818, 981
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	4 cut(s)	213, 485, 978, 1093
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	4 cut(s)	58, 547, 588, 685
BmuI	ACTGGG	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	699
Bpu14I	TTCGAA	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	1117
Bsa29I	ATCGAT	1 cut(s)	555
BsaBI	GATNNNNATC	1 cut(s)	801
BsaJI	CCNNGG	5 cut(s)	54, 100, 207, 565, 1151
BsaXI	ACNNNNNCTCC	2 cut(s)	631, 661
Bsc4I	CCNNNNNNNGG	5 cut(s)	208, 594, 727, 767, 1079
Bse118I	RCCGGY	1 cut(s)	587
Bse1I	ACTGG	1 cut(s)	265
Bse21I	CCTNAGG	1 cut(s)	350
Bse3DI	GCAATG	1 cut(s)	300
Bse8I	GATNNNNATC	1 cut(s)	801
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	5 cut(s)	54, 100, 207, 565, 1151
BseGI	GGATG	2 cut(s)	295, 603
BseJI	GATNNNNATC	1 cut(s)	801
BseLI	CCNNNNNNNGG	5 cut(s)	208, 594, 727, 767, 1079
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	6 cut(s)	333, 364, 429, 450, 690, 701
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	2 cut(s)	652, 797
BseXI	GCAGC	2 cut(s)	17, 990
BsgI	GTGCAG	1 cut(s)	989
BshFI	GGCC	3 cut(s)	5, 59, 105
BshNI	GGYRCC	2 cut(s)	976, 1091
BshVI	ATCGAT	1 cut(s)	555
BsiHKAI	GWGCWC	1 cut(s)	348
BsiHKCI	CYCGRG	2 cut(s)	818, 981
BsiSI	CCGG	1 cut(s)	588
BslFI	GGGAC	2 cut(s)	116, 368
BslI	CCNNNNNNNGG	5 cut(s)	208, 594, 727, 767, 1079
BsmAI	GTCTC	1 cut(s)	130
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	2 cut(s)	116, 368
BsmI	GAATGC	1 cut(s)	993
BsnI	GGCC	3 cut(s)	5, 59, 105
BsoBI	CYCGRG	2 cut(s)	818, 981
Bsp119I	TTCGAA	1 cut(s)	389
Bsp1286I	GDGCHC	2 cut(s)	348, 446
Bsp143I	GATC	5 cut(s)	325, 730, 802, 993, 1155
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	5 cut(s)	90, 169, 175, 365, 1089
BspANI	GGCC	3 cut(s)	5, 59, 105
BspCNI	CTCAG	6 cut(s)	334, 363, 430, 451, 691, 700
BspDI	ATCGAT	1 cut(s)	555
BspLI	GGNNCC	4 cut(s)	213, 485, 978, 1093
BspPI	GGATC	4 cut(s)	333, 738, 988, 1163
BspT104I	TTCGAA	1 cut(s)	389
BspT107I	GGYRCC	2 cut(s)	976, 1091
BsrDI	GCAATG	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	587
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	587
BssECI	CCNNGG	5 cut(s)	54, 100, 207, 565, 1151
BssMI	GATC	5 cut(s)	325, 730, 802, 993, 1155
BssT1I	CCWWGG	2 cut(s)	207, 565
Bst4CI	ACNGT	7 cut(s)	110, 279, 359, 929, 969, 1042, 1117
BstBI	TTCGAA	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	6 cut(s)	342, 350, 438, 459, 687, 699
BstDSI	CCRYGG	2 cut(s)	54, 207
BstEII	GGTNACC	1 cut(s)	716
BstF5I	GGATG	2 cut(s)	295, 603
BstKTI	GATC	5 cut(s)	328, 733, 805, 996, 1158
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	5 cut(s)	325, 730, 802, 993, 1155
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 829
BstNSI	RCATGY	1 cut(s)	377
BstPI	GGTNACC	1 cut(s)	716
BstV1I	GCAGC	2 cut(s)	17, 990
BstX2I	RGATCY	2 cut(s)	802, 993
BstYI	RGATCY	2 cut(s)	802, 993
Bsu15I	ATCGAT	1 cut(s)	555
Bsu36I	CCTNAGG	1 cut(s)	350
BsuRI	GGCC	3 cut(s)	5, 59, 105
BsuTUI	ATCGAT	1 cut(s)	555
BtgI	CCRYGG	2 cut(s)	54, 207
BtsCI	GGATG	2 cut(s)	295, 603
BtsIMutI	CAGTG	4 cut(s)	106, 275, 339, 1122
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	357
Cfr10I	RCCGGY	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	151
ClaI	ATCGAT	1 cut(s)	555
Csp6I	GTAC	2 cut(s)	618, 1092
CviAII	CATG	8 cut(s)	142, 155, 208, 335, 374, 418, 431, 1028
CviQI	GTAC	2 cut(s)	618, 1092
DdeI	CTNAG	6 cut(s)	342, 350, 438, 459, 687, 699
DpnI	GATC	5 cut(s)	327, 732, 804, 995, 1157
DpnII	GATC	5 cut(s)	325, 730, 802, 993, 1155
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
EaeI	YGGCCR	3 cut(s)	3, 57, 103
EciI	GGCGGA	1 cut(s)	354
Eco130I	CCWWGG	2 cut(s)	207, 565
Eco24I	GRGCYC	1 cut(s)	446
Eco47I	GGWCC	1 cut(s)	151
Eco81I	CCTNAGG	1 cut(s)	350
Eco88I	CYCGRG	2 cut(s)	818, 981
Eco91I	GGTNACC	1 cut(s)	716
EcoO65I	GGTNACC	1 cut(s)	716
EcoT14I	CCWWGG	2 cut(s)	207, 565
EcoT38I	GRGCYC	1 cut(s)	446
ErhI	CCWWGG	2 cut(s)	207, 565
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	8 cut(s)	145, 158, 211, 338, 377, 421, 434, 1031
FaqI	GGGAC	2 cut(s)	116, 368
FatI	CATG	8 cut(s)	141, 154, 207, 334, 373, 417, 430, 1027
FauI	CCCGC	1 cut(s)	176
Fnu4HI	GCNGC	3 cut(s)	31, 91, 1004
FokI	GGATG	2 cut(s)	302, 610
FriOI	GRGCYC	1 cut(s)	446
Fsp4HI	GCNGC	3 cut(s)	31, 91, 1004
GluI	GCNGC	3 cut(s)	31, 91, 1004
HaeIII	GGCC	3 cut(s)	5, 59, 105
HapII	CCGG	1 cut(s)	588
Hin1II	CATG	8 cut(s)	145, 158, 211, 338, 377, 421, 434, 1031
HinfI	GANTC	7 cut(s)	224, 394, 434, 463, 552, 656, 842
HpaII	CCGG	1 cut(s)	588
HphI	GGTGA	5 cut(s)	488, 602, 728, 782, 1133
Hpy166II	GTNNAC	3 cut(s)	620, 650, 965
Hpy188III	TCNNGA	2 cut(s)	202, 467
Hpy8I	GTNNAC	3 cut(s)	620, 650, 965
Hpy99I	CGWCG	3 cut(s)	26, 65, 188
HpyAV	CCTTC	5 cut(s)	456, 524, 621, 862, 941
HpyCH4III	ACNGT	7 cut(s)	110, 279, 359, 929, 969, 1042, 1117
HpyCH4IV	ACGT	2 cut(s)	652, 1160
HpyCH4V	TGCA	5 cut(s)	33, 373, 756, 991, 1006
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 829
HpyF3I	CTNAG	6 cut(s)	342, 350, 438, 459, 687, 699
HpySE526I	ACGT	2 cut(s)	652, 1160
Hsp92II	CATG	8 cut(s)	145, 158, 211, 338, 377, 421, 434, 1031
KpnI	GGTACC	1 cut(s)	1095
Kzo9I	GATC	5 cut(s)	325, 730, 802, 993, 1155
LmnI	GCTCC	2 cut(s)	483, 871
Lsp1109I	GCAGC	2 cut(s)	17, 990
LweI	GCATC	4 cut(s)	58, 547, 588, 685
MaeII	ACGT	2 cut(s)	652, 1160
MaeIII	GTNAC	3 cut(s)	716, 1042, 1111
MalI	GATC	5 cut(s)	327, 732, 804, 995, 1157
MboI	GATC	5 cut(s)	325, 730, 802, 993, 1155
MboII	GAAGA	7 cut(s)	389, 403, 520, 799, 812, 848, 851
MflI	RGATCY	2 cut(s)	802, 993
MhlI	GDGCHC	2 cut(s)	348, 446
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	81, 385, 749, 790, 846, 934, 1053
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	665
MmeI	TCCRAC	1 cut(s)	4
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	243, 294
MslI	CAYNNNNRTG	2 cut(s)	53, 305
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	1003
MspI	CCGG	1 cut(s)	588
Mva1269I	GAATGC	1 cut(s)	993
MwoI	GCNNNNNNNGC	2 cut(s)	96, 829
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	5 cut(s)	325, 730, 802, 993, 1155
NlaIII	CATG	8 cut(s)	145, 158, 211, 338, 377, 421, 434, 1031
NlaIV	GGNNCC	4 cut(s)	213, 485, 978, 1093
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	2 cut(s)	716, 1042
NspI	RCATGY	1 cut(s)	377
NspV	TTCGAA	1 cut(s)	389
PaeI	GCATGC	1 cut(s)	377
PaeR7I	CTCGAG	2 cut(s)	818, 981
PctI	GAATGC	1 cut(s)	993
PfeI	GAWTC	6 cut(s)	224, 394, 434, 463, 552, 842
PflFI	GACNNNGTC	2 cut(s)	149, 277
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	32, 92, 1005
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
PspEI	GGTNACC	1 cut(s)	716
PspN4I	GGNNCC	4 cut(s)	213, 485, 978, 1093
PspPI	GGNCC	1 cut(s)	151
PspXI	VCTCGAGB	2 cut(s)	818, 981
PstNI	CAGNNNCTG	1 cut(s)	357
PsuI	RGATCY	2 cut(s)	802, 993
PsyI	GACNNNGTC	2 cut(s)	149, 277
PvuII	CAGCTG	1 cut(s)	1003
RsaI	GTAC	2 cut(s)	619, 1093
RsaNI	GTAC	2 cut(s)	618, 1092
RseI	CAYNNNNRTG	2 cut(s)	53, 305
SaqAI	TTAA	2 cut(s)	243, 294
SatI	GCNGC	3 cut(s)	31, 91, 1004
Sau3AI	GATC	5 cut(s)	325, 730, 802, 993, 1155
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	1 cut(s)	665
SduI	GDGCHC	2 cut(s)	348, 446
SfaNI	GCATC	4 cut(s)	58, 547, 588, 685
Sfr274I	CTCGAG	2 cut(s)	818, 981
SfuI	TTCGAA	1 cut(s)	389
SinI	GGWCC	1 cut(s)	151
SlaI	CTCGAG	2 cut(s)	818, 981
SmiMI	CAYNNNNRTG	2 cut(s)	53, 305
SmlI	CTYRAG	3 cut(s)	818, 981, 1096
SmoI	CTYRAG	3 cut(s)	818, 981, 1096
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	7 cut(s)	81, 385, 749, 790, 846, 934, 1053
SsiI	CCGC	5 cut(s)	90, 169, 175, 365, 1089
SspI	AATATT	1 cut(s)	682
StyI	CCWWGG	2 cut(s)	207, 565
TaaI	ACNGT	7 cut(s)	110, 279, 359, 929, 969, 1042, 1117
TaiI	ACGT	2 cut(s)	655, 1163
TaqI	TCGA	4 cut(s)	389, 555, 819, 982
TasI	AATT	7 cut(s)	81, 385, 749, 790, 846, 934, 1053
TatI	WGTACW	1 cut(s)	617
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	6 cut(s)	224, 394, 434, 463, 552, 842
Tru1I	TTAA	2 cut(s)	243, 294
Tru9I	TTAA	2 cut(s)	243, 294
TscAI	CASTG	4 cut(s)	113, 282, 346, 1122
TseFI	GTSAC	2 cut(s)	716, 1042
TseI	GCWGC	2 cut(s)	30, 1003
Tsp45I	GTSAC	2 cut(s)	716, 1042
TspDTI	ATGAA	4 cut(s)	434, 443, 813, 852
TspGWI	ACGGA	4 cut(s)	118, 180, 286, 390
TspRI	CASTG	4 cut(s)	113, 282, 346, 1122
Tth111I	GACNNNGTC	2 cut(s)	149, 277
Van91I	CCANNNNNTGG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	2 cut(s)	749, 934
XceI	RCATGY	1 cut(s)	377
XhoI	CTCGAG	2 cut(s)	818, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.