RLG00000016846

RNA-binding protein NOB1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001896
Physical Location & Seq
Reverse (-)
10607917 .. 10609781
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016846

Sequence Viewer

Length: 1065 bp
ATGACTTATACATTGGAGGCTCAGATACATGGCACTGAGCACCTCAGGGACTGTCCTCCGCCTGTGCATGCTATCCACAATTCGAAGAGTCTTCCGTTGAAAGATATAAACATGAATGTTATCCATGATTCTGAGAGCTCTTCTGTTCATTCTGAGAATCAGGAGGGTGGTGAGGGGAGCCATAGGAGATATTTTTCAAAGAAGAAAGAGATAATAAAGATTGAAGGGGAGATGGTTTCTGACGGAATTGATGCGTTCCAAGGACAAGTTGATGATAATGCCGGTGATTGGATGCCTGTCGTCAGTCCGAGCACACGTAGAAAGTTTTTGAGGAGAAAAGGTAAACGTGAGTCTTATGAGGCATCGGCTGATAATGATTCTCAGCAAGATGCTGAGGAAAACACAAGTGGTGACCTACTTGTAGATCAAACATCGGCTTCTAAATTTTGCAGACCTGTGGAGGGTGAGATGACAGAGGAGAAGAATTGTGATGAAGATCTTTCCTCAATCCTCGAGCAAACAAGGCGTGATGAAGATTCAATGAGGGTTCTTCAAAAAGGGAAGGAGCAGAATGGGGTTGAGGATAATGATTTCAAAGAAGGGGAAAGATATGAGGTTGAAGTGATAAATGAAGGGCTGGATCACTTGGAGGTCTCAAGCGATAATGATGCTAGTTTTGATACATCAAATGTGAACGATGATAGTAGTCAGCAGAGCTGGACGCTGCGATCCTTGTCTGAGTCTAGTGTAGCTTGTACAACAAGTGATTTTGCAATGCAAAATGTTATTCTGCAGATGGGTTTACGGTTCTTGGCACCTGGAGGAATGCAGATACGCCAGCTGCACAGGTGGATTTTGAAATGTCATGCTTGTAATACTGTGACTGCTGAAATTGGGAGAATATTTTGTCCGAAGTGTGGAAATGGCGGTACCTTGCGCAAGGTAGCAGTTAAAGTGGGTGAGAATGGGATTATTCTTGCGGCCCATAAGCCTTGGATCACTTTGCGTGGCACAAGATTTTCACTTCCTTTGACACAAGGTGGAAGAAATGCCATTACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOB1_Zn_bind PIN_6

Protein Analysis

355

Amino Acids

39.46

Weight (kDa)

5.25

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_NOB1 PF08772 278 - 348 2.2e-20 Nin one binding (NOB1) Zn-ribbon like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 938
Acc65I GGTACC 1 cut(s) 929
AccB1I GGYRCC 2 cut(s) 814, 929
AciI CCGC 3 cut(s) 59, 927, 980
AclWI GGATC 3 cut(s) 648, 723, 1004
AcsI RAATTY 1 cut(s) 443
AdeI CACNNNGTG 1 cut(s) 1040
AfaI GTAC 2 cut(s) 757, 931
AfiI CCNNNNNNNGG 3 cut(s) 288, 461, 917
AflIII ACRYGT 1 cut(s) 314
AgsI TTSAA 8 cut(s) 100, 198, 224, 540, 554, 595, 620, 859
AjnI CCWGG 1 cut(s) 817
AluBI AGCT 4 cut(s) 138, 717, 752, 841
AluI AGCT 4 cut(s) 138, 717, 752, 841
Alw21I GWGCWC 3 cut(s) 42, 140, 314
Alw26I GTCTC 1 cut(s) 658
AlwI GGATC 3 cut(s) 648, 723, 1004
AlwNI CAGNNNCTG 1 cut(s) 51
Ama87I CYCGRG 1 cut(s) 512
AoxI GGCC 1 cut(s) 981
ApeKI GCWGC 2 cut(s) 724, 841
ApoI RAATTY 1 cut(s) 443
Asp718I GGTACC 1 cut(s) 929
AspLEI GCGC 1 cut(s) 939
AspS9I GGNCC 1 cut(s) 982
AsuHPI GGTGA 5 cut(s) 182, 296, 422, 476, 971
AsuII TTCGAA 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 512
AxyI CCTNAGG 1 cut(s) 44
BanI GGYRCC 2 cut(s) 814, 929
BanII GRGCYC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 3 cut(s) 42, 140, 314
BbvCI CCTCAGC 1 cut(s) 393
BbvI GCAGC 2 cut(s) 711, 828
BccI CCATC 2 cut(s) 226, 790
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 1 cut(s) 819
BcoDI GTCTC 1 cut(s) 658
BfaI CTAG 2 cut(s) 672, 744
BfmI CTRYAG 1 cut(s) 791
BglII AGATCT 1 cut(s) 496
BisI GCNGC 3 cut(s) 725, 842, 981
BlsI GCNGC 3 cut(s) 726, 843, 982
Bme1390I CCNGG 1 cut(s) 819
BmeT110I CYCGRG 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 982
BmiI GGNNCC 3 cut(s) 179, 816, 931
BmrFI CCNGG 1 cut(s) 819
BmsI GCATC 5 cut(s) 241, 282, 371, 379, 658
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 840
Bpu10I CCTNAGC 1 cut(s) 393
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 640
BsaAI YACGTR 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 495
BsaI GGTCTC 1 cut(s) 658
BsaJI CCNNGG 2 cut(s) 259, 992
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 3 cut(s) 288, 461, 917
Bse118I RCCGGY 1 cut(s) 281
Bse21I CCTNAGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 780
Bse8I GATNNNNATC 1 cut(s) 495
BseBI CCWGG 1 cut(s) 819
BseDI CCNNGG 2 cut(s) 259, 992
BseGI GGATG 1 cut(s) 297
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 3 cut(s) 288, 461, 917
BseMI GCAATG 1 cut(s) 780
BseMII CTCAG 8 cut(s) 27, 35, 58, 123, 144, 384, 395, 729
BseRI GAGGAG 2 cut(s) 346, 491
BseXI GCAGC 2 cut(s) 711, 828
BsgI GTGCAG 1 cut(s) 827
BshFI GGCC 1 cut(s) 983
BshNI GGYRCC 2 cut(s) 814, 929
BsiHKAI GWGCWC 3 cut(s) 42, 140, 314
BsiHKCI CYCGRG 1 cut(s) 512
BsiSI CCGG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 3 cut(s) 288, 461, 917
BsmAI GTCTC 1 cut(s) 658
BsmFI GGGAC 1 cut(s) 62
BsmI GAATGC 1 cut(s) 831
BsnI GGCC 1 cut(s) 983
Bso31I GGTCTC 1 cut(s) 658
BsoBI CYCGRG 1 cut(s) 512
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 3 cut(s) 42, 140, 314
Bsp1407I TGTACA 1 cut(s) 755
Bsp143I GATC 5 cut(s) 424, 496, 640, 728, 996
BspACI CCGC 3 cut(s) 59, 927, 980
BspANI GGCC 1 cut(s) 983
BspCNI CTCAG 8 cut(s) 28, 34, 57, 124, 145, 385, 394, 730
BspLI GGNNCC 3 cut(s) 179, 816, 931
BspMAI CTGCAG 1 cut(s) 795
BspPI GGATC 3 cut(s) 648, 723, 1004
BspQI GCTCTTC 1 cut(s) 145
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 2 cut(s) 814, 929
BspTNI GGTCTC 1 cut(s) 658
BsrDI GCAATG 1 cut(s) 780
BsrFI RCCGGY 1 cut(s) 281
BsrGI TGTACA 1 cut(s) 755
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 259, 992
BssMI GATC 5 cut(s) 424, 496, 640, 728, 996
BssT1I CCWWGG 2 cut(s) 259, 992
Bst2UI CCWGG 1 cut(s) 819
Bst4CI ACNGT 3 cut(s) 53, 807, 880
Bst6I CTCTTC 2 cut(s) 80, 145
BstAUI TGTACA 1 cut(s) 755
BstBAI YACGTR 1 cut(s) 317
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 69, 839
BstDEI CTNAG 8 cut(s) 21, 36, 44, 132, 153, 381, 393, 738
BstEII GGTNACC 1 cut(s) 410
BstF5I GGATG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 939
BstKTI GATC 5 cut(s) 427, 499, 643, 731, 999
BstMAI GTCTC 1 cut(s) 658
BstMBI GATC 5 cut(s) 424, 496, 640, 728, 996
BstMWI GCNNNNNNNGC 1 cut(s) 523
BstNI CCWGG 1 cut(s) 819
BstNSI RCATGY 1 cut(s) 71
BstPI GGTNACC 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 817
BstSFI CTRYAG 1 cut(s) 791
BstV1I GCAGC 2 cut(s) 711, 828
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
Bsu36I CCTNAGG 1 cut(s) 44
BsuRI GGCC 1 cut(s) 983
BtsCI GGATG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 69, 839
CaiI CAGNNNCTG 1 cut(s) 51
CfoI GCGC 1 cut(s) 939
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 982
CseI GACGC 1 cut(s) 730
Csp6I GTAC 2 cut(s) 756, 930
CviAII CATG 5 cut(s) 29, 68, 112, 125, 866
CviQI GTAC 2 cut(s) 756, 930
DdeI CTNAG 8 cut(s) 21, 36, 44, 132, 153, 381, 393, 738
DpnI GATC 5 cut(s) 426, 498, 642, 730, 998
DpnII GATC 5 cut(s) 424, 496, 640, 728, 996
DraIII CACNNNGTG 1 cut(s) 1040
Eam1104I CTCTTC 2 cut(s) 80, 145
EarI CTCTTC 2 cut(s) 80, 145
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 138
Eco130I CCWWGG 2 cut(s) 259, 992
Eco24I GRGCYC 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 658
Eco53kI GAGCTC 1 cut(s) 138
Eco81I CCTNAGG 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 512
Eco91I GGTNACC 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 138
EcoO65I GGTNACC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 817
EcoT14I CCWWGG 2 cut(s) 259, 992
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 2 cut(s) 259, 992
FaeI CATG 5 cut(s) 32, 71, 115, 128, 869
FaqI GGGAC 1 cut(s) 62
FatI CATG 5 cut(s) 28, 67, 111, 124, 865
Fnu4HI GCNGC 3 cut(s) 725, 842, 981
FokI GGATG 1 cut(s) 304
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 3 cut(s) 725, 842, 981
FspBI CTAG 2 cut(s) 672, 744
FspI TGCGCA 1 cut(s) 938
GlaI GCGC 1 cut(s) 938
GluI GCNGC 3 cut(s) 725, 842, 981
GsuI CTGGAG 1 cut(s) 840
HaeIII GGCC 1 cut(s) 983
HapII CCGG 1 cut(s) 282
HgaI GACGC 1 cut(s) 730
HhaI GCGC 1 cut(s) 939
Hin1II CATG 5 cut(s) 32, 71, 115, 128, 869
Hin6I GCGC 1 cut(s) 937
HinP1I GCGC 1 cut(s) 937
HinfI GANTC 7 cut(s) 88, 128, 157, 350, 377, 536, 740
HpaII CCGG 1 cut(s) 282
HphI GGTGA 5 cut(s) 182, 296, 422, 476, 971
Hpy166II GTNNAC 3 cut(s) 344, 694, 803
Hpy188I TCNGA 7 cut(s) 24, 133, 154, 241, 309, 739, 912
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 3 cut(s) 344, 694, 803
HpyAV CCTTC 4 cut(s) 218, 556, 593, 626
HpyCH4III ACNGT 3 cut(s) 53, 807, 880
HpyCH4IV ACGT 2 cut(s) 316, 346
HpyCH4V TGCA 7 cut(s) 67, 450, 773, 778, 793, 829, 844
HpyF10VI GCNNNNNNNGC 1 cut(s) 523
HpyF3I CTNAG 8 cut(s) 21, 36, 44, 132, 153, 381, 393, 738
HpySE526I ACGT 2 cut(s) 316, 346
Hsp92II CATG 5 cut(s) 32, 71, 115, 128, 869
HspAI GCGC 1 cut(s) 937
KpnI GGTACC 1 cut(s) 933
Kzo9I GATC 5 cut(s) 424, 496, 640, 728, 996
LguI GCTCTTC 1 cut(s) 145
LmnI GCTCC 2 cut(s) 177, 565
Lsp1109I GCAGC 2 cut(s) 711, 828
LweI GCATC 5 cut(s) 241, 282, 371, 379, 658
MaeI CTAG 2 cut(s) 672, 744
MaeII ACGT 2 cut(s) 316, 346
MaeIII GTNAC 2 cut(s) 410, 880
MalI GATC 5 cut(s) 426, 498, 642, 730, 998
MboI GATC 5 cut(s) 424, 496, 640, 728, 996
MboII GAAGA 9 cut(s) 83, 97, 132, 214, 493, 506, 542, 545, 1056
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 3 cut(s) 42, 140, 314
MluCI AATT 5 cut(s) 79, 246, 443, 484, 891
MlyI GAGTC 3 cut(s) 97, 359, 749
MseI TTAA 1 cut(s) 951
MspA1I CMGCKG 1 cut(s) 841
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 819
Mva1269I GAATGC 1 cut(s) 831
MvaI CCWGG 1 cut(s) 819
MwoI GCNNNNNNNGC 1 cut(s) 523
NdeII GATC 5 cut(s) 424, 496, 640, 728, 996
NlaIII CATG 5 cut(s) 32, 71, 115, 128, 869
NlaIV GGNNCC 3 cut(s) 179, 816, 931
NmuCI GTSAC 2 cut(s) 410, 880
NsbI TGCGCA 1 cut(s) 938
NspI RCATGY 1 cut(s) 71
NspV TTCGAA 1 cut(s) 83
PaeI GCATGC 1 cut(s) 71
PaeR7I CTCGAG 1 cut(s) 512
PciSI GCTCTTC 1 cut(s) 145
PctI GAATGC 1 cut(s) 831
PfeI GAWTC 4 cut(s) 128, 157, 377, 536
PkrI GCNGC 3 cut(s) 726, 843, 982
PleI GAGTC 3 cut(s) 96, 358, 748
PpsI GAGTC 3 cut(s) 96, 358, 748
Ppu21I YACGTR 1 cut(s) 317
Psp124BI GAGCTC 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 817
PspEI GGTNACC 1 cut(s) 410
PspGI CCWGG 1 cut(s) 817
PspN4I GGNNCC 3 cut(s) 179, 816, 931
PspPI GGNCC 1 cut(s) 982
PspXI VCTCGAGB 1 cut(s) 512
PstI CTGCAG 1 cut(s) 795
PstNI CAGNNNCTG 1 cut(s) 51
PsuI RGATCY 1 cut(s) 496
PvuII CAGCTG 1 cut(s) 841
RsaI GTAC 2 cut(s) 757, 931
RsaNI GTAC 2 cut(s) 756, 930
SacI GAGCTC 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 951
SatI GCNGC 3 cut(s) 725, 842, 981
Sau3AI GATC 5 cut(s) 424, 496, 640, 728, 996
Sau96I GGNCC 1 cut(s) 982
SchI GAGTC 3 cut(s) 97, 359, 749
ScrFI CCNGG 1 cut(s) 819
SduI GDGCHC 3 cut(s) 42, 140, 314
SfaNI GCATC 5 cut(s) 241, 282, 371, 379, 658
SfcI CTRYAG 1 cut(s) 791
Sfr274I CTCGAG 1 cut(s) 512
SfuI TTCGAA 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 512
SmlI CTYRAG 2 cut(s) 512, 655
SmoI CTYRAG 2 cut(s) 512, 655
SphI GCATGC 1 cut(s) 71
Sse9I AATT 5 cut(s) 79, 246, 443, 484, 891
SsiI CCGC 3 cut(s) 59, 927, 980
SspI AATATT 1 cut(s) 903
SspMI CTAG 2 cut(s) 672, 744
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 817
StyI CCWWGG 2 cut(s) 259, 992
TaaI ACNGT 3 cut(s) 53, 807, 880
TaiI ACGT 2 cut(s) 319, 349
TaqI TCGA 2 cut(s) 83, 513
TasI AATT 5 cut(s) 79, 246, 443, 484, 891
TatI WGTACW 1 cut(s) 755
TauI GCSGC 1 cut(s) 983
TfiI GAWTC 4 cut(s) 128, 157, 377, 536
Tru1I TTAA 1 cut(s) 951
Tru9I TTAA 1 cut(s) 951
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 2 cut(s) 410, 880
TseI GCWGC 2 cut(s) 724, 841
Tsp45I GTSAC 2 cut(s) 410, 880
TspDTI ATGAA 5 cut(s) 128, 137, 507, 546, 645
TspGWI ACGGA 2 cut(s) 84, 258
TspRI CASTG 1 cut(s) 40
XapI RAATTY 1 cut(s) 443
XceI RCATGY 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 512
XspI CTAG 2 cut(s) 672, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.