Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001896

Physical Location & Seq

Genomic Coordinates Reverse (-)

26321298 .. 26324197

Gene Structure 2900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G022390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGATGCCACTGACACCCCATCCCCAATCCCCGACCCGAACCCGAACGCTGCCCCAACTGTCTCCTATTGGAGCAACATCGTGAAGAAGCAGCCGGACCCAAAGCCCCAAAACTCCTCCGACTCCTTCTCAATCGCCGCCGGCAAAGTATTCGTCAAAAGCTGCAAATCCTCCAAGGGCATAGCCGTCGTCGTCGTCGCCGCCAATGCTATCATTCAAGGCGGTGAGACCCTCGCCCACTGCACCGACAAGTTCGTCTCCTTCCCAGAGGTCATGGACGAGGGAAATAATGTGCCTAATTTGGAAGAGTGGGAAGCGTTGGAGAACGAAGCGGAGGATAAGTTGAACACCAGTTCGAGGATTCTTCCGTTGAAAGATATAAACTTGAATGTTATTGAGGATTTTGAGAGCCGTTCTGTTGATGGTTATGCGGTGGAAGTTAGGAGTGATGTTCGTTTTGAGAATAAGGAGGGTGGTGAAGGCATTCAGGGGAGACATAAGAGATATTTTCCAAAGAAGAAAGAGATAAAGATTGAAGGGAAGATGGTTTCTGATGGAATTGATGCATCCCAAGGACAAGCTGATGATAATGCCGGTGATTGGATGCCTGAGATGATTTCCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

NOB1_Zn_bind PIN_6

Protein Analysis

208

Amino Acids

22.8

Weight (kDa)

4.67

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41190
fragaria_vesca	FvH4_5g23090
malus_domestica	MD14G1101800.v1.1
prunus_persica	Prupe.5G097400_v2.0.a1
pyrus_communis	pycom06g07650 pycom14g09860
rosa_chinensis	RchiOBHm_Chr2g0099081 RchiOBHm_Chr7g0179141 RchiOBHm_Chr7g0211871 RchiOBHm_Chr7g0211921 RchiOBHm_Chr7g0211961
rosa_laevigata	RLG00000002953 RLG00000002956 RLG00000005381 RLG00000016846 RLG00000021575
rosa_multiflora	Rmu_sc0000888.1_g000019 Rmu_sc0009005.1_g000003 Rmu_sc0017524.1_g000001 Rmu_sc0018807.1_g000007 Rmu_sc0022966.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143460 Rroxscaffold_3G00247290 Rroxscaffold_3G00247320 Rroxscaffold_3G00274270 Rroxscaffold_3G00274340
rosa_rugosa	Rorug02G0076500 Rorug06G0421300 Rorug07G0129500 Rorug07G0129600
rosa_samantha	Rh2AG125600 Rh2BG128900 Rh2CG129900 Rh2DG130300 Rh7AG020500 Rh7AG262400 Rh7BG020600 Rh7BG255900 Rh7CG021700 Rh7CG278400 Rh7DG021100 Rh7DG268900 Rh7DG269200
rosa_wichuraiana	Rw7G001720 Rw7G022370 Rw7G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AciI	CCGC	5 cut(s)	138, 201, 222, 332, 431
AfiI	CCNNNNNNNGG	2 cut(s)	357, 600
AgsI	TTSAA	5 cut(s)	218, 346, 373, 388, 536
AjnI	CCWGG	1 cut(s)	620
AluBI	AGCT	2 cut(s)	162, 581
AluI	AGCT	2 cut(s)	162, 581
Alw26I	GTCTC	4 cut(s)	67, 221, 262, 487
ApeKI	GCWGC	3 cut(s)	50, 91, 162
ArsI	GACNNNNNNTTYG	2 cut(s)	138, 170
Asp700I	GAANNNNTTC	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	3 cut(s)	236, 488, 608
AvaII	GGWCC	1 cut(s)	97
BbvI	GCAGC	3 cut(s)	37, 103, 149
BccI	CCATC	4 cut(s)	28, 416, 538, 548
BceAI	ACGGC	2 cut(s)	170, 396
BcgI	CGANNNNNNTGC	4 cut(s)	133, 167, 169, 203
BciT130I	CCWGG	1 cut(s)	622
BcoDI	GTCTC	4 cut(s)	67, 221, 262, 487
BisI	GCNGC	5 cut(s)	51, 92, 138, 163, 201
BlsI	GCNGC	5 cut(s)	52, 93, 139, 164, 202
Bme1390I	CCNGG	1 cut(s)	622
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	622
BmsI	GCATC	3 cut(s)	553, 575, 594
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	174, 571
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	2 cut(s)	357, 600
Bse118I	RCCGGY	2 cut(s)	140, 593
Bse1I	ACTGG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	622
BseDI	CCNNGG	2 cut(s)	174, 571
BseGI	GGATG	4 cut(s)	10, 20, 566, 609
BseLI	CCNNNNNNNGG	2 cut(s)	357, 600
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	37, 103, 149
BsgI	GTGCAG	1 cut(s)	226
BsiSI	CCGG	3 cut(s)	95, 141, 594
BslI	CCNNNNNNNGG	2 cut(s)	357, 600
BsmAI	GTCTC	4 cut(s)	67, 221, 262, 487
BsmBI	CGTCTC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	483
Bso31I	GGTCTC	1 cut(s)	221
BspACI	CCGC	5 cut(s)	138, 201, 222, 332, 431
BspCNI	CTCAG	1 cut(s)	601
BspLI	GGNNCC	1 cut(s)	99
BspTNI	GGTCTC	1 cut(s)	221
BsrFI	RCCGGY	2 cut(s)	140, 593
BsrI	ACTGG	1 cut(s)	351
BssAI	RCCGGY	2 cut(s)	140, 593
BssECI	CCNNGG	2 cut(s)	174, 571
BssT1I	CCWWGG	2 cut(s)	174, 571
Bst2UI	CCWGG	1 cut(s)	622
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	609
BstF5I	GGATG	4 cut(s)	10, 20, 566, 609
BstMAI	GTCTC	4 cut(s)	67, 221, 262, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	1 cut(s)	622
BstSCI	CCNGG	1 cut(s)	620
BstV1I	GCAGC	3 cut(s)	37, 103, 149
BtsCI	GGATG	4 cut(s)	10, 20, 566, 609
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	2 cut(s)	9, 238
Cac8I	GCNNGC	1 cut(s)	142
Cfr10I	RCCGGY	2 cut(s)	140, 593
Cfr13I	GGNCC	1 cut(s)	97
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	6 cut(s)	94, 106, 162, 185, 411, 581
CviKI_1	RGCY	6 cut(s)	94, 106, 162, 185, 411, 581
DdeI	CTNAG	1 cut(s)	609
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	2 cut(s)	174, 571
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	620
EcoT14I	CCWWGG	2 cut(s)	174, 571
EcoT22I	ATGCAT	1 cut(s)	568
ErhI	CCWWGG	2 cut(s)	174, 571
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	1 cut(s)	277
FaiI	YATR	5 cut(s)	182, 275, 380, 429, 498
FatI	CATG	1 cut(s)	273
Fnu4HI	GCNGC	5 cut(s)	51, 92, 138, 163, 201
FokI	GGATG	4 cut(s)	7, 17, 553, 616
Fsp4HI	GCNGC	5 cut(s)	51, 92, 138, 163, 201
GluI	GCNGC	5 cut(s)	51, 92, 138, 163, 201
HapII	CCGG	3 cut(s)	95, 141, 594
Hin1II	CATG	1 cut(s)	277
HinfI	GANTC	2 cut(s)	122, 361
HpaII	CCGG	3 cut(s)	95, 141, 594
HphI	GGTGA	3 cut(s)	236, 488, 608
Hpy188I	TCNGA	2 cut(s)	121, 553
Hpy188III	TCNNGA	1 cut(s)	82
Hpy99I	CGWCG	4 cut(s)	191, 194, 197, 200
HpyAV	CCTTC	4 cut(s)	136, 271, 473, 530
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	3 cut(s)	165, 243, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	609
Hsp92II	CATG	1 cut(s)	277
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	8 cut(s)	108, 154, 279, 364, 473, 607, 607, 621
Lsp1109I	GCAGC	3 cut(s)	37, 103, 149
LweI	GCATC	3 cut(s)	553, 575, 594
MboII	GAAGA	5 cut(s)	97, 317, 356, 529, 553
MluCI	AATT	2 cut(s)	298, 558
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	144, 300
MnlI	CCTC	9 cut(s)	127, 181, 242, 262, 274, 328, 351, 391, 463
Mph1103I	ATGCAT	1 cut(s)	568
MroNI	GCCGGC	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	483
MspI	CCGG	3 cut(s)	95, 141, 594
MspR9I	CCNGG	1 cut(s)	622
Mva1269I	GAATGC	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	622
MwoI	GCNNNNNNNGC	1 cut(s)	206
NaeI	GCCGGC	1 cut(s)	142
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	99
NsiI	ATGCAT	1 cut(s)	568
PctI	GAATGC	1 cut(s)	483
PdiI	GCCGGC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	361
PkrI	GCNGC	5 cut(s)	52, 93, 139, 164, 202
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	620
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	97
SatI	GCNGC	5 cut(s)	51, 92, 138, 163, 201
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	622
SetI	ASST	3 cut(s)	164, 273, 583
SfaNI	GCATC	3 cut(s)	553, 575, 594
SinI	GGWCC	1 cut(s)	97
Sse9I	AATT	2 cut(s)	298, 558
SsiI	CCGC	5 cut(s)	138, 201, 222, 332, 431
StyD4I	CCNGG	1 cut(s)	620
StyI	CCWWGG	2 cut(s)	174, 571
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	356
TasI	AATT	2 cut(s)	298, 558
TauI	GCSGC	2 cut(s)	140, 203
TfiI	GAWTC	1 cut(s)	361
TscAI	CASTG	2 cut(s)	16, 245
TseI	GCWGC	3 cut(s)	50, 91, 162
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	16, 245
VpaK11BI	GGWCC	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.