RLG00000021575

RNA-binding protein NOB1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001896
Physical Location & Seq
Reverse (-)
76511796 .. 76512860
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021575

Sequence Viewer

Length: 966 bp
ATGCCTGCCGTCAGTCGGAGTACACATAGAAGGTTTTTGAGAAGAAAAGCTAGACGTGAGTCTTATGAGGCATCGGCTGATAATGATTCTCAGCAAGATGCTGAGGAAAACACCAGTGGTGACGTACTTGTAGATGCTAGGAGCCAGGATCAAACATCGCCTTCTAAATTTGAAGAGGCATATTGCAGAGCTGTGGCGAGTGAGATGACAGAAGAGAAGAATTGTGCTGAAGATCTTTCCTCAATCCTTGAGCAAACAAGGCGTGATGAAGATTCGCTTAGGGCTCTTCAAAAAGGGAAGGAGCAGCATGGGGTTGAGGATAATGATTTCAAAGCAGGGGAAAGCACTTCTGATAACGGTGTGAATTTTGCTGTTGAGGGAGATGAGGTTGAAGTGATAAATGAAGGTCTGGATCACTTGGAGATCTCAAGTCATAATGACGGTAGTGTTGATACATCAAATGTTAACGATGATAGCAGTGAGCAGAGCTGGATGCTGCGATCCTTGTCTGAGTCTAGTGTAGCATGTATAACAAATGGGTTTACGGTTGTTGGCACCGGGAGGAATGCAGATCCGCCAGCTGCACAGTGTGGAAATGGTGGTACCTTGCGCAAGGTAGCAGTTACAGTGGGAGAGAATGGGATTATTCTTGCAGCACGTAAGCCTCGGATCACATTGCGTGGCACAAGATTTTCACTTCCTTTACCTCAAGGTGGAAGAAATGCCATTACTAAGAACCCTGTTTTACGTGAGGATCAGCTCCCACAAAAGTACCTTCATCCAAAGACAAAAAAGAAAGCAAATAAGCCGGGAGATGACGACCTATTCACTTCCAATGACTTCATCTTCCGCCACCATTCTGACAAAAAGGCTCCTTTGCAGCCTCCTGTAAGGAAGGCATTAGCTGCTTTCAGTGGAAGGAGGAATCCCAACGACAATCATTATTCACATTCCAAGCATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOB1_Zn_bind PIN_6

Protein Analysis

322

Amino Acids

35.41

Weight (kDa)

5.97

Isoelectric Point (pI)

57.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_NOB1 PF08772 196 - 239 5.3e-07 Nin one binding (NOB1) Zn-ribbon like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 611
Acc65I GGTACC 1 cut(s) 602
AccB1I GGYRCC 2 cut(s) 554, 602
AciI CCGC 2 cut(s) 575, 850
AclWI GGATC 6 cut(s) 156, 420, 495, 566, 677, 762
AcsI RAATTY 2 cut(s) 167, 364
AcuI CTGAAG 1 cut(s) 249
AdeI CACNNNGTG 1 cut(s) 590
AfaI GTAC 4 cut(s) 22, 126, 604, 773
AfiI CCNNNNNNNGG 2 cut(s) 15, 713
AgsI TTSAA 4 cut(s) 173, 290, 331, 392
AjiI CACGTC 1 cut(s) 56
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 6 cut(s) 50, 191, 489, 581, 760, 905
AluI AGCT 6 cut(s) 50, 191, 489, 581, 760, 905
AlwI GGATC 6 cut(s) 156, 420, 495, 566, 677, 762
ApeKI GCWGC 6 cut(s) 304, 496, 581, 653, 880, 905
ApoI RAATTY 2 cut(s) 167, 364
Asp718I GGTACC 1 cut(s) 602
AspLEI GCGC 1 cut(s) 612
AsuC2I CCSGG 2 cut(s) 559, 810
AsuHPI GGTGA 1 cut(s) 131
BaeI ACNNNNGTAYC 2 cut(s) 755, 788
BanI GGYRCC 2 cut(s) 554, 602
BanII GRGCYC 1 cut(s) 286
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 6 cut(s) 316, 483, 568, 665, 892, 892
BciT130I CCWGG 1 cut(s) 146
BcnI CCSGG 2 cut(s) 559, 810
BfaI CTAG 3 cut(s) 51, 138, 516
BglII AGATCT 2 cut(s) 232, 423
BisI GCNGC 6 cut(s) 305, 497, 582, 654, 881, 906
BlsI GCNGC 6 cut(s) 306, 498, 583, 655, 882, 907
Bme1390I CCNGG 3 cut(s) 146, 559, 810
BmgBI CACGTC 1 cut(s) 56
BmiI GGNNCC 4 cut(s) 143, 556, 604, 873
BmrFI CCNGG 3 cut(s) 146, 559, 810
BmsI GCATC 4 cut(s) 80, 88, 124, 483
BoxI GACNNNNGTC 1 cut(s) 58
Bpu10I CCTNAGC 2 cut(s) 102, 278
BpuEI CTTGAG 3 cut(s) 269, 412, 693
BpuMI CCSGG 2 cut(s) 559, 810
BsaAI YACGTR 2 cut(s) 659, 749
BsaJI CCNNGG 1 cut(s) 665
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 713
Bse1I ACTGG 1 cut(s) 114
Bse3DI GCAATG 1 cut(s) 674
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 665
BseGI GGATG 2 cut(s) 498, 778
BseLI CCNNNNNNNGG 2 cut(s) 15, 713
BseMI GCAATG 1 cut(s) 674
BseMII CTCAG 3 cut(s) 93, 104, 501
BseNI ACTGG 1 cut(s) 114
BseXI GCAGC 6 cut(s) 316, 483, 568, 665, 892, 892
BsgI GTGCAG 1 cut(s) 567
BshNI GGYRCC 2 cut(s) 554, 602
BsiSI CCGG 2 cut(s) 558, 809
BslI CCNNNNNNNGG 2 cut(s) 15, 713
BsmI GAATGC 1 cut(s) 571
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 8 cut(s) 148, 232, 412, 423, 500, 571, 669, 754
BspACI CCGC 2 cut(s) 575, 850
BspCNI CTCAG 3 cut(s) 94, 103, 502
BspLI GGNNCC 4 cut(s) 143, 556, 604, 873
BspPI GGATC 6 cut(s) 156, 420, 495, 566, 677, 762
BspQI GCTCTTC 1 cut(s) 291
BspT107I GGYRCC 2 cut(s) 554, 602
BsrDI GCAATG 1 cut(s) 674
BsrI ACTGG 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 665
BssMI GATC 8 cut(s) 148, 232, 412, 423, 500, 571, 669, 754
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 5 cut(s) 359, 443, 547, 588, 628
Bst6I CTCTTC 3 cut(s) 168, 207, 291
BstAPI GCANNNNNTGC 1 cut(s) 905
BstBAI YACGTR 2 cut(s) 659, 749
BstC8I GCNNGC 2 cut(s) 6, 579
BstDEI CTNAG 5 cut(s) 90, 102, 278, 510, 732
BstF5I GGATG 2 cut(s) 498, 778
BstHHI GCGC 1 cut(s) 612
BstKTI GATC 8 cut(s) 151, 235, 415, 426, 503, 574, 672, 757
BstMBI GATC 8 cut(s) 148, 232, 412, 423, 500, 571, 669, 754
BstMWI GCNNNNNNNGC 2 cut(s) 259, 905
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 528
BstPAI GACNNNNGTC 1 cut(s) 58
BstSCI CCNGG 3 cut(s) 144, 557, 808
BstV1I GCAGC 6 cut(s) 316, 483, 568, 665, 892, 892
BstX2I RGATCY 3 cut(s) 232, 423, 571
BstYI RGATCY 3 cut(s) 232, 423, 571
BtgZI GCGATG 1 cut(s) 141
BtrI CACGTC 1 cut(s) 56
BtsCI GGATG 2 cut(s) 498, 778
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 5 cut(s) 121, 484, 593, 633, 919
Cac8I GCNNGC 2 cut(s) 6, 579
CfoI GCGC 1 cut(s) 612
Csp6I GTAC 4 cut(s) 21, 125, 603, 772
CviAII CATG 2 cut(s) 308, 525
CviQI GTAC 4 cut(s) 21, 125, 603, 772
DdeI CTNAG 5 cut(s) 90, 102, 278, 510, 732
DpnI GATC 8 cut(s) 150, 234, 414, 425, 502, 573, 671, 756
DpnII GATC 8 cut(s) 148, 232, 412, 423, 500, 571, 669, 754
DraIII CACNNNGTG 1 cut(s) 590
Eam1104I CTCTTC 3 cut(s) 168, 207, 291
EarI CTCTTC 3 cut(s) 168, 207, 291
EciI GGCGGA 2 cut(s) 564, 839
Eco24I GRGCYC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 286
FaeI CATG 2 cut(s) 311, 528
FaiI YATR 7 cut(s) 27, 66, 181, 309, 435, 526, 530
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 2 cut(s) 307, 524
Fnu4HI GCNGC 6 cut(s) 305, 497, 582, 654, 881, 906
FokI GGATG 2 cut(s) 505, 765
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 6 cut(s) 305, 497, 582, 654, 881, 906
FspBI CTAG 3 cut(s) 51, 138, 516
FspI TGCGCA 1 cut(s) 611
GlaI GCGC 1 cut(s) 611
GluI GCNGC 6 cut(s) 305, 497, 582, 654, 881, 906
HapII CCGG 2 cut(s) 558, 809
HhaI GCGC 1 cut(s) 612
Hin1II CATG 2 cut(s) 311, 528
Hin6I GCGC 1 cut(s) 610
HinP1I GCGC 1 cut(s) 610
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 5 cut(s) 59, 86, 272, 512, 925
HpaI GTTAAC 1 cut(s) 466
HpaII CCGG 2 cut(s) 558, 809
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 3 cut(s) 23, 466, 543
Hpy188I TCNGA 5 cut(s) 18, 352, 511, 669, 862
Hpy188III TCNNGA 1 cut(s) 410
Hpy8I GTNNAC 3 cut(s) 23, 466, 543
HpyAV CCTTC 7 cut(s) 24, 171, 292, 398, 785, 889, 912
HpyCH4III ACNGT 5 cut(s) 359, 443, 547, 588, 628
HpyCH4IV ACGT 4 cut(s) 55, 123, 658, 748
HpyCH4V TGCA 5 cut(s) 186, 569, 584, 653, 880
HpyF10VI GCNNNNNNNGC 2 cut(s) 259, 905
HpyF3I CTNAG 5 cut(s) 90, 102, 278, 510, 732
HpySE526I ACGT 4 cut(s) 55, 123, 658, 748
Hsp92II CATG 2 cut(s) 311, 528
HspAI GCGC 1 cut(s) 610
KpnI GGTACC 1 cut(s) 606
KspAI GTTAAC 1 cut(s) 466
Kzo9I GATC 8 cut(s) 148, 232, 412, 423, 500, 571, 669, 754
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 4 cut(s) 141, 301, 765, 877
Lsp1109I GCAGC 6 cut(s) 316, 483, 568, 665, 892, 892
LweI GCATC 4 cut(s) 80, 88, 124, 483
MaeI CTAG 3 cut(s) 51, 138, 516
MaeII ACGT 4 cut(s) 55, 123, 658, 748
MaeIII GTNAC 2 cut(s) 119, 622
MalI GATC 8 cut(s) 150, 234, 414, 425, 502, 573, 671, 756
MboI GATC 8 cut(s) 148, 232, 412, 423, 500, 571, 669, 754
MboII GAAGA 9 cut(s) 54, 185, 224, 229, 242, 278, 281, 729, 838
MflI RGATCY 3 cut(s) 232, 423, 571
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 3 cut(s) 167, 220, 364
MlyI GAGTC 2 cut(s) 68, 521
MseI TTAA 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 2 cut(s) 558, 809
MspR9I CCNGG 3 cut(s) 146, 559, 810
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 259, 905
NciI CCSGG 2 cut(s) 559, 810
NdeII GATC 8 cut(s) 148, 232, 412, 423, 500, 571, 669, 754
NlaIII CATG 2 cut(s) 311, 528
NlaIV GGNNCC 4 cut(s) 143, 556, 604, 873
NmuCI GTSAC 1 cut(s) 119
NsbI TGCGCA 1 cut(s) 611
NspI RCATGY 1 cut(s) 528
PciSI GCTCTTC 1 cut(s) 291
PctI GAATGC 1 cut(s) 571
PfeI GAWTC 3 cut(s) 86, 272, 925
PkrI GCNGC 6 cut(s) 306, 498, 583, 655, 882, 907
PleI GAGTC 2 cut(s) 67, 520
PpsI GAGTC 2 cut(s) 67, 520
Ppu21I YACGTR 2 cut(s) 659, 749
PshAI GACNNNNGTC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 4 cut(s) 143, 556, 604, 873
PsuI RGATCY 3 cut(s) 232, 423, 571
PvuII CAGCTG 1 cut(s) 581
RsaI GTAC 4 cut(s) 22, 126, 604, 773
RsaNI GTAC 4 cut(s) 21, 125, 603, 772
SapI GCTCTTC 1 cut(s) 291
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 6 cut(s) 305, 497, 582, 654, 881, 906
Sau3AI GATC 8 cut(s) 148, 232, 412, 423, 500, 571, 669, 754
SchI GAGTC 2 cut(s) 68, 521
ScrFI CCNGG 3 cut(s) 146, 559, 810
SduI GDGCHC 1 cut(s) 286
SfaNI GCATC 4 cut(s) 80, 88, 124, 483
SmlI CTYRAG 3 cut(s) 248, 427, 708
SmoI CTYRAG 3 cut(s) 248, 427, 708
Sse9I AATT 3 cut(s) 167, 220, 364
SsiI CCGC 2 cut(s) 575, 850
SspMI CTAG 3 cut(s) 51, 138, 516
StyD4I CCNGG 3 cut(s) 144, 557, 808
TaaI ACNGT 5 cut(s) 359, 443, 547, 588, 628
TaiI ACGT 4 cut(s) 58, 126, 661, 751
TasI AATT 3 cut(s) 167, 220, 364
TatI WGTACW 1 cut(s) 20
TfiI GAWTC 3 cut(s) 86, 272, 925
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 5 cut(s) 121, 484, 593, 633, 919
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 6 cut(s) 304, 496, 581, 653, 880, 905
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 4 cut(s) 282, 417, 767, 832
TspRI CASTG 5 cut(s) 121, 484, 593, 633, 919
XapI RAATTY 2 cut(s) 167, 364
XceI RCATGY 1 cut(s) 528
XspI CTAG 3 cut(s) 51, 138, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.