Rh2CG129900

RNA-binding protein NOB1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
11579054 .. 11581911
2858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG129900.1

Sequence Viewer

Length: 1338 bp
ATGGCCACCAGCAAAGTATTCGTCGGAAGCTGCAAGTCCTCTACGGGCATAGCCGTGGCCGTCGTAGATGCCAATGCTATAATTCAAGGCGGCGAGAGCCTCGGCCACTGTGCCGACAAGTTCGTCTCCGTCCCCGAAGTCATGGACGAGGTCCATGACCCTATTTCCCGCCACCGCCTCGCCGTCGTTCCGTTCCAAGTCCAGACCATGGAACCCTCCCCTGAATCCCTCAATAAAGTTATTAAGTTTGCGAGGGCTACTGGGGATTTACGGACACTGTCAGATGTGGATGTTAAGCTCATTGCTATGACTTATACATTGGAGGATCAGATACATGGCACTGAGCACCTCAGGGACTGTCCTCCGCCTGTGCATGCTATCCACAATTCGAAGATTCTTCCGTTGAAAGATATAAACATGAATGTTATCCATGATTCTGAGAGCCCTTCTGTTCATTCTGAGAATCAGGAGGGTGGTGAGGGGAGCCATAGGAGATATTTTCCAAAGAAGAAAGAGATAATAAAGATTGAAGGGGAGATAGTTTCTGACAGAATCGATGCGTTCCAAGGACAAGTAGATGATAATGCCGGTGATTGGATGCCTGTCGTCAGTCCGAGTACACATAGAAGGTTTTTGAGGAGAAAAGGTAAACGTGAGTCTTATGAGGCTTCGGCTGATAATATTTCTCAGCAAGATGCTGAGGAAAACACAAGTGGTGACCTACTTGTGGATCAAACATCGGCTTCTAAATTTTGCAGACCTGTGGAGGGTGAGATGACAGAGGAGAAGAATTGTGATGAAGATCTTTCCTCAATCCTCGAGCAAACAAGGCGTGATGAAGATTCAATTAGGGTTCTTCAAAAAGGGAAGGAGCAGAATGGGGTTGAGGATAATGATTTCAAAGCAGGGGAAAGCACTTCTGATAACGGTGTGAATTTTTCTGTTGAAGGATATGAGATGGGTTTACGGTTGTTGGCACCTCGAGGAATGCAGATCCACCAGCTGCACAGGTGGATTTTGAAATGTCATGCTTGTAATACTGTGACTGCTGAAATTGGGAGAATGTTCTGTCCGAAGTGTGGAAATGGCGGTACCTTGAGCAAGGTAGCAGTTACAGTGGGTGAGAATGGGATTATTCTTGCCCGTAAGCCTCGGATCACGTTGCGTGGCACAAAATTTTCACTTCCTTTGCCACAAGGTGGAAGAAATGCCATTACCAAAAAGCCCAATGGAGGAGGAGAAGGAGGGCCAACTCAGCAGGCCCAATGGGGTCAACCTGAGCACTACAACAGTGATGACCGGGTGCTTATGATCGGGTATCACCGCCGAGACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

445

Amino Acids

49.11

Weight (kDa)

5.85

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIN_6 PF17146 21 - 107 2.1e-24 PIN domain of ribonuclease
Zn_ribbon_NOB1 PF08772 332 - 401 3.1e-22 Nin one binding (NOB1) Zn-ribbon like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AbsI CCTCGAGG 1 cut(s) 981
Acc65I GGTACC 1 cut(s) 1091
AccB1I GGYRCC 2 cut(s) 976, 1091
AccB7I CCANNNNNTGG 2 cut(s) 208, 1199
AciI CCGC 6 cut(s) 90, 169, 175, 365, 1089, 1324
AclWI GGATC 4 cut(s) 333, 738, 988, 1163
AcoI YGGCCR 3 cut(s) 3, 57, 103
AcsI RAATTY 3 cut(s) 749, 934, 1175
AdeI CACNNNGTG 1 cut(s) 1199
AfaI GTAC 2 cut(s) 619, 1093
AfiI CCNNNNNNNGG 7 cut(s) 208, 594, 727, 767, 1079, 1199, 1232
AgsI TTSAA 8 cut(s) 86, 406, 530, 846, 860, 901, 947, 1021
AluBI AGCT 3 cut(s) 30, 298, 1003
AluI AGCT 3 cut(s) 30, 298, 1003
Alw21I GWGCWC 2 cut(s) 348, 1284
Alw26I GTCTC 2 cut(s) 130, 1323
AlwI GGATC 4 cut(s) 333, 738, 988, 1163
AlwNI CAGNNNCTG 1 cut(s) 357
Ama87I CYCGRG 2 cut(s) 818, 981
AoxI GGCC 5 cut(s) 3, 57, 103, 1247, 1260
ApeKI GCWGC 2 cut(s) 30, 1003
ApoI RAATTY 3 cut(s) 749, 934, 1175
ArsI GACNNNNNNTTYG 1 cut(s) 38
Asp718I GGTACC 1 cut(s) 1091
AspS9I GGNCC 3 cut(s) 151, 1247, 1261
AsuC2I CCSGG 1 cut(s) 1301
AsuHPI GGTGA 6 cut(s) 488, 602, 728, 782, 1133, 1313
AsuII TTCGAA 1 cut(s) 389
AvaI CYCGRG 2 cut(s) 818, 981
AvaII GGWCC 1 cut(s) 151
AxyI CCTNAGG 1 cut(s) 350
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 976, 1091
BanII GRGCYC 1 cut(s) 446
Bbv12I GWGCWC 2 cut(s) 348, 1284
BbvCI CCTCAGC 1 cut(s) 699
BbvI GCAGC 2 cut(s) 17, 990
BccI CCATC 1 cut(s) 952
BceAI ACGGC 3 cut(s) 38, 44, 167
BcgI CGANNNNNNTGC 1 cut(s) 35
BcnI CCSGG 1 cut(s) 1301
BcoDI GTCTC 2 cut(s) 130, 1323
BglII AGATCT 1 cut(s) 802
BisI GCNGC 3 cut(s) 31, 91, 1004
BlsI GCNGC 3 cut(s) 32, 92, 1005
Bme1390I CCNGG 1 cut(s) 1301
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 2 cut(s) 818, 981
BmgT120I GGNCC 3 cut(s) 151, 1247, 1261
BmiI GGNNCC 4 cut(s) 213, 485, 978, 1093
BmrFI CCNGG 1 cut(s) 1301
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 4 cut(s) 58, 547, 588, 685
BmuI ACTGGG 1 cut(s) 270
Bpu10I CCTNAGC 2 cut(s) 699, 1278
Bpu14I TTCGAA 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 1117
BpuMI CCSGG 1 cut(s) 1301
Bsa29I ATCGAT 1 cut(s) 555
BsaBI GATNNNNATC 1 cut(s) 801
BsaJI CCNNGG 5 cut(s) 54, 100, 207, 565, 1151
BsaXI ACNNNNNCTCC 2 cut(s) 631, 661
Bsc4I CCNNNNNNNGG 7 cut(s) 208, 594, 727, 767, 1079, 1199, 1232
Bse118I RCCGGY 1 cut(s) 587
Bse1I ACTGG 1 cut(s) 265
Bse21I CCTNAGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 300
Bse8I GATNNNNATC 1 cut(s) 801
BseCI ATCGAT 1 cut(s) 555
BseDI CCNNGG 5 cut(s) 54, 100, 207, 565, 1151
BseGI GGATG 2 cut(s) 295, 603
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 7 cut(s) 208, 594, 727, 767, 1079, 1199, 1232
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 8 cut(s) 333, 364, 429, 450, 690, 701, 1268, 1269
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 4 cut(s) 652, 797, 1248, 1251
BseXI GCAGC 2 cut(s) 17, 990
BsgI GTGCAG 1 cut(s) 989
BshFI GGCC 5 cut(s) 5, 59, 105, 1249, 1262
BshNI GGYRCC 2 cut(s) 976, 1091
BshVI ATCGAT 1 cut(s) 555
BsiHKAI GWGCWC 2 cut(s) 348, 1284
BsiHKCI CYCGRG 2 cut(s) 818, 981
BsiSI CCGG 2 cut(s) 588, 1300
BslFI GGGAC 2 cut(s) 116, 368
BslI CCNNNNNNNGG 7 cut(s) 208, 594, 727, 767, 1079, 1199, 1232
BsmAI GTCTC 2 cut(s) 130, 1323
BsmBI CGTCTC 2 cut(s) 130, 1323
BsmFI GGGAC 2 cut(s) 116, 368
BsmI GAATGC 1 cut(s) 993
BsnI GGCC 5 cut(s) 5, 59, 105, 1249, 1262
BsoBI CYCGRG 2 cut(s) 818, 981
Bsp119I TTCGAA 1 cut(s) 389
Bsp1286I GDGCHC 3 cut(s) 348, 446, 1284
Bsp143I GATC 6 cut(s) 325, 730, 802, 993, 1155, 1311
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 6 cut(s) 90, 169, 175, 365, 1089, 1324
BspANI GGCC 5 cut(s) 5, 59, 105, 1249, 1262
BspCNI CTCAG 8 cut(s) 334, 363, 430, 451, 691, 700, 1267, 1270
BspDI ATCGAT 1 cut(s) 555
BspLI GGNNCC 4 cut(s) 213, 485, 978, 1093
BspPI GGATC 4 cut(s) 333, 738, 988, 1163
BspT104I TTCGAA 1 cut(s) 389
BspT107I GGYRCC 2 cut(s) 976, 1091
BsrDI GCAATG 1 cut(s) 300
BsrFI RCCGGY 1 cut(s) 587
BsrI ACTGG 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 587
BssECI CCNNGG 5 cut(s) 54, 100, 207, 565, 1151
BssMI GATC 6 cut(s) 325, 730, 802, 993, 1155, 1311
BssT1I CCWWGG 2 cut(s) 207, 565
Bst4CI ACNGT 8 cut(s) 110, 279, 359, 929, 969, 1042, 1117, 1292
BstBI TTCGAA 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 375, 1260
BstDEI CTNAG 8 cut(s) 342, 350, 438, 459, 687, 699, 1254, 1278
BstDSI CCRYGG 2 cut(s) 54, 207
BstEII GGTNACC 1 cut(s) 716
BstF5I GGATG 2 cut(s) 295, 603
BstKTI GATC 6 cut(s) 328, 733, 805, 996, 1158, 1314
BstMAI GTCTC 2 cut(s) 130, 1323
BstMBI GATC 6 cut(s) 325, 730, 802, 993, 1155, 1311
BstMWI GCNNNNNNNGC 3 cut(s) 96, 829, 1255
BstNSI RCATGY 1 cut(s) 377
BstPI GGTNACC 1 cut(s) 716
BstSCI CCNGG 1 cut(s) 1299
BstV1I GCAGC 2 cut(s) 17, 990
BstX2I RGATCY 2 cut(s) 802, 993
BstYI RGATCY 2 cut(s) 802, 993
Bsu15I ATCGAT 1 cut(s) 555
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 5 cut(s) 5, 59, 105, 1249, 1262
BsuTUI ATCGAT 1 cut(s) 555
BtgI CCRYGG 2 cut(s) 54, 207
BtsCI GGATG 2 cut(s) 295, 603
BtsIMutI CAGTG 5 cut(s) 106, 275, 339, 1122, 1297
Cac8I GCNNGC 2 cut(s) 375, 1260
CaiI CAGNNNCTG 1 cut(s) 357
Cfr10I RCCGGY 1 cut(s) 587
Cfr13I GGNCC 3 cut(s) 151, 1247, 1261
ClaI ATCGAT 1 cut(s) 555
Csp6I GTAC 2 cut(s) 618, 1092
CviAII CATG 8 cut(s) 142, 155, 208, 335, 374, 418, 431, 1028
CviQI GTAC 2 cut(s) 618, 1092
DdeI CTNAG 8 cut(s) 342, 350, 438, 459, 687, 699, 1254, 1278
DpnI GATC 6 cut(s) 327, 732, 804, 995, 1157, 1313
DpnII GATC 6 cut(s) 325, 730, 802, 993, 1155, 1311
DraIII CACNNNGTG 1 cut(s) 1199
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 3 cut(s) 3, 57, 103
EciI GGCGGA 1 cut(s) 354
Eco130I CCWWGG 2 cut(s) 207, 565
Eco24I GRGCYC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 151
Eco81I CCTNAGG 1 cut(s) 350
Eco88I CYCGRG 2 cut(s) 818, 981
Eco91I GGTNACC 1 cut(s) 716
EcoO65I GGTNACC 1 cut(s) 716
EcoT14I CCWWGG 2 cut(s) 207, 565
EcoT38I GRGCYC 1 cut(s) 446
ErhI CCWWGG 2 cut(s) 207, 565
Esp3I CGTCTC 2 cut(s) 130, 1323
FaeI CATG 8 cut(s) 145, 158, 211, 338, 377, 421, 434, 1031
FaqI GGGAC 2 cut(s) 116, 368
FatI CATG 8 cut(s) 141, 154, 207, 334, 373, 417, 430, 1027
FauI CCCGC 1 cut(s) 176
Fnu4HI GCNGC 3 cut(s) 31, 91, 1004
FokI GGATG 2 cut(s) 302, 610
FriOI GRGCYC 1 cut(s) 446
Fsp4HI GCNGC 3 cut(s) 31, 91, 1004
GluI GCNGC 3 cut(s) 31, 91, 1004
HaeIII GGCC 5 cut(s) 5, 59, 105, 1249, 1262
HapII CCGG 2 cut(s) 588, 1300
Hin1II CATG 8 cut(s) 145, 158, 211, 338, 377, 421, 434, 1031
HincII GTYRAC 1 cut(s) 1274
HindII GTYRAC 1 cut(s) 1274
HinfI GANTC 7 cut(s) 224, 394, 434, 463, 552, 656, 842
HpaII CCGG 2 cut(s) 588, 1300
HphI GGTGA 6 cut(s) 488, 602, 728, 782, 1133, 1313
Hpy166II GTNNAC 4 cut(s) 620, 650, 965, 1274
Hpy188III TCNNGA 2 cut(s) 202, 467
Hpy8I GTNNAC 4 cut(s) 620, 650, 965, 1274
Hpy99I CGWCG 3 cut(s) 26, 65, 188
HpyAV CCTTC 6 cut(s) 456, 524, 621, 862, 941, 1235
HpyCH4III ACNGT 8 cut(s) 110, 279, 359, 929, 969, 1042, 1117, 1292
HpyCH4IV ACGT 2 cut(s) 652, 1160
HpyCH4V TGCA 5 cut(s) 33, 373, 756, 991, 1006
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 829, 1255
HpyF3I CTNAG 8 cut(s) 342, 350, 438, 459, 687, 699, 1254, 1278
HpySE526I ACGT 2 cut(s) 652, 1160
Hsp92II CATG 8 cut(s) 145, 158, 211, 338, 377, 421, 434, 1031
KpnI GGTACC 1 cut(s) 1095
Kzo9I GATC 6 cut(s) 325, 730, 802, 993, 1155, 1311
LmnI GCTCC 2 cut(s) 483, 871
Lsp1109I GCAGC 2 cut(s) 17, 990
LweI GCATC 4 cut(s) 58, 547, 588, 685
MaeII ACGT 2 cut(s) 652, 1160
MaeIII GTNAC 3 cut(s) 716, 1042, 1111
MalI GATC 6 cut(s) 327, 732, 804, 995, 1157, 1313
MboI GATC 6 cut(s) 325, 730, 802, 993, 1155, 1311
MboII GAAGA 8 cut(s) 389, 403, 520, 799, 812, 848, 851, 1215
MflI RGATCY 2 cut(s) 802, 993
MhlI GDGCHC 3 cut(s) 348, 446, 1284
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 81, 385, 749, 790, 846, 934, 1053, 1175
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 665
MmeI TCCRAC 1 cut(s) 4
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 243, 294
MslI CAYNNNNRTG 2 cut(s) 53, 305
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 1003
MspI CCGG 2 cut(s) 588, 1300
MspR9I CCNGG 1 cut(s) 1301
Mva1269I GAATGC 1 cut(s) 993
MwoI GCNNNNNNNGC 3 cut(s) 96, 829, 1255
NciI CCSGG 1 cut(s) 1301
NcoI CCATGG 1 cut(s) 207
NdeII GATC 6 cut(s) 325, 730, 802, 993, 1155, 1311
NlaIII CATG 8 cut(s) 145, 158, 211, 338, 377, 421, 434, 1031
NlaIV GGNNCC 4 cut(s) 213, 485, 978, 1093
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 2 cut(s) 716, 1042
NspI RCATGY 1 cut(s) 377
NspV TTCGAA 1 cut(s) 389
PaeI GCATGC 1 cut(s) 377
PaeR7I CTCGAG 2 cut(s) 818, 981
PctI GAATGC 1 cut(s) 993
PfeI GAWTC 6 cut(s) 224, 394, 434, 463, 552, 842
PflFI GACNNNGTC 2 cut(s) 149, 277
PflMI CCANNNNNTGG 2 cut(s) 208, 1199
PkrI GCNGC 3 cut(s) 32, 92, 1005
PleI GAGTC 1 cut(s) 664
PpsI GAGTC 1 cut(s) 664
PspEI GGTNACC 1 cut(s) 716
PspN4I GGNNCC 4 cut(s) 213, 485, 978, 1093
PspPI GGNCC 3 cut(s) 151, 1247, 1261
PspXI VCTCGAGB 2 cut(s) 818, 981
PstNI CAGNNNCTG 1 cut(s) 357
PsuI RGATCY 2 cut(s) 802, 993
PsyI GACNNNGTC 2 cut(s) 149, 277
PvuII CAGCTG 1 cut(s) 1003
RsaI GTAC 2 cut(s) 619, 1093
RsaNI GTAC 2 cut(s) 618, 1092
RseI CAYNNNNRTG 2 cut(s) 53, 305
SaqAI TTAA 2 cut(s) 243, 294
SatI GCNGC 3 cut(s) 31, 91, 1004
Sau3AI GATC 6 cut(s) 325, 730, 802, 993, 1155, 1311
Sau96I GGNCC 3 cut(s) 151, 1247, 1261
SchI GAGTC 1 cut(s) 665
ScrFI CCNGG 1 cut(s) 1301
SduI GDGCHC 3 cut(s) 348, 446, 1284
SfaNI GCATC 4 cut(s) 58, 547, 588, 685
Sfr274I CTCGAG 2 cut(s) 818, 981
SfuI TTCGAA 1 cut(s) 389
SinI GGWCC 1 cut(s) 151
SlaI CTCGAG 2 cut(s) 818, 981
SmiMI CAYNNNNRTG 2 cut(s) 53, 305
SmlI CTYRAG 3 cut(s) 818, 981, 1096
SmoI CTYRAG 3 cut(s) 818, 981, 1096
SphI GCATGC 1 cut(s) 377
Sse9I AATT 8 cut(s) 81, 385, 749, 790, 846, 934, 1053, 1175
SsiI CCGC 6 cut(s) 90, 169, 175, 365, 1089, 1324
SspI AATATT 1 cut(s) 682
StyD4I CCNGG 1 cut(s) 1299
StyI CCWWGG 2 cut(s) 207, 565
TaaI ACNGT 8 cut(s) 110, 279, 359, 929, 969, 1042, 1117, 1292
TaiI ACGT 2 cut(s) 655, 1163
TaqI TCGA 4 cut(s) 389, 555, 819, 982
TasI AATT 8 cut(s) 81, 385, 749, 790, 846, 934, 1053, 1175
TatI WGTACW 1 cut(s) 617
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 6 cut(s) 224, 394, 434, 463, 552, 842
Tru1I TTAA 2 cut(s) 243, 294
Tru9I TTAA 2 cut(s) 243, 294
TscAI CASTG 5 cut(s) 113, 282, 346, 1122, 1297
TseFI GTSAC 2 cut(s) 716, 1042
TseI GCWGC 2 cut(s) 30, 1003
Tsp45I GTSAC 2 cut(s) 716, 1042
TspDTI ATGAA 4 cut(s) 434, 443, 813, 852
TspGWI ACGGA 4 cut(s) 118, 180, 286, 390
TspRI CASTG 5 cut(s) 113, 282, 346, 1122, 1297
Tth111I GACNNNGTC 2 cut(s) 149, 277
Van91I CCANNNNNTGG 2 cut(s) 208, 1199
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 3 cut(s) 749, 934, 1175
XceI RCATGY 1 cut(s) 377
XhoI CTCGAG 2 cut(s) 818, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.