Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000888.1

Orthogroup ID

OG0001896

Physical Location & Seq

Genomic Coordinates Reverse (-)

70317 .. 72497

Gene Structure 2181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000888.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atgacatatacactggaggctcagatacatggcactgaccacctcagggactgtcctccgccggtgcatactgtcaatgtcaggaggttgccggagaaggacttgcccggctgggaaaataatgtccccaatttggaagagtgggaagcgctggaaaacaaagcggaggataagagcaactctgtttcgaggattcttccgttgaaagatattaacttgaatgtttctgttgatggttctgcggtggaaatcagaagtgatgttcattctgagaatcaggagggtggtgagggcattcaggggagatataggagatattttccaaagaagaaagagataaatattgaagggaagatggtttctgatggaattgatgcgtcccaaggacaagttgatgataatactggtgactggatgcctgctgttagtcggagtacacatagaaggtttttgagaagaaaagctagacgtgagtcttatgaggcggcatcagctgataatgatcctcagctacatgctgaggaaaacacaagtggtggcgtacttgttgatgtgaatttttctgttgaaggagatgaggttgaaatgataaatgaaaggctggatcacttggagatctcaagcgataatggtgcaagtgttgatacattaaatgtgaacgatgatagtagtgagcagagctggatgctgagatccttgtatgagtctagtgtagcttgtataacaagtgattttgcaatgcaaaatgttattctgcagatgggtttacggttgttggcacctggaggaatgcagatccgccagctgaagaggtggattttgaaatgccatgcttgcaatactttgaccaatgaaattgggagaatgttttgtccaaagtgtggaaatggtggtaccttgtgcaaggtatcagttacagtgggtgagaatgggattactcttgcggcacgtaagcctcggatccccaagcgtggcacaagatattcacttcctttaccacaaggtggaagaaatgccattaccaaaaaccctattttacgtgaggatcagcttccacaaaagtacctccatccaaagacaaagaagaaagcaaataagccgggagatgacgacctagtcacttccaatgacttcatcttcatccaccattcggataaaaaggctcctttgcagcctccagtgaggaaggcattagctgctttcagcgggaggaggaatcccaatgacaatcactattcacattccaagcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

NOB1_Zn_bind PIN_6

Protein Analysis

417

Amino Acids

46.67

Weight (kDa)

6.93

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41190
fragaria_vesca	FvH4_5g23090
malus_domestica	MD14G1101800.v1.1
prunus_persica	Prupe.5G097400_v2.0.a1
pyrus_communis	pycom06g07650 pycom14g09860
rosa_chinensis	RchiOBHm_Chr2g0099081 RchiOBHm_Chr7g0179141 RchiOBHm_Chr7g0211871 RchiOBHm_Chr7g0211921 RchiOBHm_Chr7g0211961
rosa_laevigata	RLG00000002953 RLG00000002956 RLG00000005381 RLG00000016846 RLG00000021575
rosa_multiflora	Rmu_sc0000888.1_g000019 Rmu_sc0009005.1_g000003 Rmu_sc0017524.1_g000001 Rmu_sc0018807.1_g000007 Rmu_sc0022966.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143460 Rroxscaffold_3G00247290 Rroxscaffold_3G00247320 Rroxscaffold_3G00274270 Rroxscaffold_3G00274340
rosa_rugosa	Rorug02G0076500 Rorug06G0421300 Rorug07G0129500 Rorug07G0129600
rosa_samantha	Rh2AG125600 Rh2BG128900 Rh2CG129900 Rh2DG130300 Rh7AG020500 Rh7AG262400 Rh7BG020600 Rh7BG255900 Rh7CG021700 Rh7CG278400 Rh7DG021100 Rh7DG268900 Rh7DG269200
rosa_wichuraiana	Rw7G001720 Rw7G022370 Rw7G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1115
Acc65I	GGTACC	1 cut(s)	893
AccB1I	GGYRCC	2 cut(s)	778, 893
AccB7I	CCANNNNNTGG	2 cut(s)	881, 1004
AciI	CCGC	7 cut(s)	59, 164, 242, 485, 799, 944, 1206
AclWI	GGATC	7 cut(s)	497, 612, 687, 790, 955, 968, 1053
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	827
AdeI	CACNNNGTG	1 cut(s)	1004
AfaI	GTAC	4 cut(s)	436, 543, 895, 1064
AfeI	AGCGCT	1 cut(s)	150
AfiI	CCNNNNNNNGG	6 cut(s)	46, 133, 881, 971, 1004, 1150
AgsI	TTSAA	6 cut(s)	205, 220, 347, 569, 584, 823
AjiI	CACGTC	1 cut(s)	470
AjnI	CCWGG	1 cut(s)	781
AluBI	AGCT	8 cut(s)	464, 494, 511, 681, 716, 805, 1051, 1196
AluI	AGCT	8 cut(s)	464, 494, 511, 681, 716, 805, 1051, 1196
AlwI	GGATC	7 cut(s)	497, 612, 687, 790, 955, 968, 1053
AlwNI	CAGNNNCTG	1 cut(s)	51
Aor51HI	AGCGCT	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	1171, 1196
ApoI	RAATTY	1 cut(s)	556
Asp718I	GGTACC	1 cut(s)	893
AspLEI	GCGC	1 cut(s)	151
AsuC2I	CCSGG	2 cut(s)	108, 1101
AsuHPI	GGTGA	3 cut(s)	299, 419, 935
AxyI	CCTNAGG	1 cut(s)	44
BaeI	ACNNNNGTAYC	2 cut(s)	1046, 1079
BamHI	GGATCC	1 cut(s)	960
BanI	GGYRCC	2 cut(s)	778, 893
BbvCI	CCTCAGC	2 cut(s)	507, 519
BbvI	GCAGC	2 cut(s)	1183, 1183
BccI	CCATC	5 cut(s)	227, 349, 359, 754, 1077
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciT130I	CCWGG	1 cut(s)	783
BcnI	CCSGG	2 cut(s)	108, 1101
BfaI	CTAG	3 cut(s)	465, 708, 1115
BfmI	CTRYAG	1 cut(s)	755
BfoI	RGCGCY	1 cut(s)	152
BglII	AGATCT	1 cut(s)	615
BisI	GCNGC	4 cut(s)	486, 945, 1172, 1197
BlsI	GCNGC	4 cut(s)	487, 946, 1173, 1198
Bme1390I	CCNGG	3 cut(s)	108, 783, 1101
BmgBI	CACGTC	1 cut(s)	470
BmiI	GGNNCC	4 cut(s)	780, 895, 962, 1164
BmrFI	CCNGG	3 cut(s)	108, 783, 1101
BmsI	GCATC	4 cut(s)	364, 405, 497, 675
BoxI	GACNNNNGTC	1 cut(s)	472
BpmI	CTGGAG	3 cut(s)	35, 804, 1161
Bpu10I	CCTNAGC	2 cut(s)	507, 519
BpuEI	CTTGAG	1 cut(s)	604
BpuMI	CCSGG	2 cut(s)	108, 1101
BsaAI	YACGTR	2 cut(s)	950, 1040
BsaBI	GATNNNNATC	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	382, 956
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 133, 881, 971, 1004, 1150
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	4 cut(s)	18, 409, 416, 1178
Bse21I	CCTNAGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	744
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	783
BseDI	CCNNGG	2 cut(s)	382, 956
BseGI	GGATG	4 cut(s)	420, 690, 1069, 1140
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	6 cut(s)	46, 133, 881, 971, 1004, 1150
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	6 cut(s)	35, 58, 261, 510, 521, 680
BseNI	ACTGG	4 cut(s)	18, 409, 416, 1178
BseRI	GAGGAG	1 cut(s)	1225
BseXI	GCAGC	2 cut(s)	1183, 1183
BseYI	CCCAGC	1 cut(s)	111
BshNI	GGYRCC	2 cut(s)	778, 893
BsiSI	CCGG	4 cut(s)	62, 92, 108, 1100
BslFI	GGGAC	3 cut(s)	62, 110, 364
BslI	CCNNNNNNNGG	6 cut(s)	46, 133, 881, 971, 1004, 1150
BsmFI	GGGAC	3 cut(s)	62, 110, 364
BsmI	GAATGC	2 cut(s)	294, 795
Bsp143I	GATC	7 cut(s)	502, 604, 615, 692, 795, 960, 1045
BspACI	CCGC	7 cut(s)	59, 164, 242, 485, 799, 944, 1206
BspCNI	CTCAG	6 cut(s)	34, 57, 262, 511, 520, 681
BspLI	GGNNCC	4 cut(s)	780, 895, 962, 1164
BspMAI	CTGCAG	1 cut(s)	759
BspPI	GGATC	7 cut(s)	497, 612, 687, 790, 955, 968, 1053
BspT107I	GGYRCC	2 cut(s)	778, 893
BsrDI	GCAATG	1 cut(s)	744
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	4 cut(s)	18, 409, 416, 1178
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	2 cut(s)	382, 956
BssMI	GATC	7 cut(s)	502, 604, 615, 692, 795, 960, 1045
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	783
Bst4CI	ACNGT	4 cut(s)	53, 73, 771, 919
Bst6I	CTCTTC	2 cut(s)	132, 803
BstAPI	GCANNNNNTGC	1 cut(s)	1196
BstBAI	YACGTR	2 cut(s)	950, 1040
BstC8I	GCNNGC	3 cut(s)	420, 803, 835
BstDEI	CTNAG	6 cut(s)	21, 44, 270, 507, 519, 689
BstF5I	GGATG	4 cut(s)	420, 690, 1069, 1140
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	7 cut(s)	505, 607, 618, 695, 798, 963, 1048
BstMBI	GATC	7 cut(s)	502, 604, 615, 692, 795, 960, 1045
BstMWI	GCNNNNNNNGC	3 cut(s)	491, 834, 1196
BstNI	CCWGG	1 cut(s)	783
BstNSI	RCATGY	1 cut(s)	518
BstPAI	GACNNNNGTC	1 cut(s)	472
BstSCI	CCNGG	3 cut(s)	106, 781, 1099
BstSFI	CTRYAG	1 cut(s)	755
BstV1I	GCAGC	2 cut(s)	1183, 1183
BstX2I	RGATCY	4 cut(s)	615, 692, 795, 960
BstYI	RGATCY	4 cut(s)	615, 692, 795, 960
Bsu36I	CCTNAGG	1 cut(s)	44
BtrI	CACGTC	1 cut(s)	470
BtsCI	GGATG	4 cut(s)	420, 690, 1069, 1140
BtsIMutI	CAGTG	4 cut(s)	11, 33, 924, 1185
Cac8I	GCNNGC	3 cut(s)	420, 803, 835
CaiI	CAGNNNCTG	1 cut(s)	51
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	61
CseI	GACGC	1 cut(s)	366
Csp6I	GTAC	4 cut(s)	435, 542, 894, 1063
CviAII	CATG	3 cut(s)	29, 515, 830
CviQI	GTAC	4 cut(s)	435, 542, 894, 1063
DdeI	CTNAG	6 cut(s)	21, 44, 270, 507, 519, 689
DpnI	GATC	7 cut(s)	504, 606, 617, 694, 797, 962, 1047
DpnII	GATC	7 cut(s)	502, 604, 615, 692, 795, 960, 1045
DraIII	CACNNNGTG	1 cut(s)	1004
DrdI	GACNNNNNNGTC	1 cut(s)	1115
DseDI	GACNNNNNNGTC	1 cut(s)	1115
Eam1104I	CTCTTC	2 cut(s)	132, 803
EarI	CTCTTC	2 cut(s)	132, 803
EciI	GGCGGA	2 cut(s)	48, 788
Eco130I	CCWWGG	1 cut(s)	382
Eco47III	AGCGCT	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	827
Eco81I	CCTNAGG	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	781
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	3 cut(s)	32, 518, 833
FaqI	GGGAC	3 cut(s)	62, 110, 364
FatI	CATG	3 cut(s)	28, 514, 829
FauI	CCCGC	1 cut(s)	1199
Fnu4HI	GCNGC	4 cut(s)	486, 945, 1172, 1197
FokI	GGATG	4 cut(s)	427, 697, 1056, 1127
Fsp4HI	GCNGC	4 cut(s)	486, 945, 1172, 1197
FspBI	CTAG	3 cut(s)	465, 708, 1115
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	4 cut(s)	486, 945, 1172, 1197
GsaI	CCCAGC	1 cut(s)	115
GsuI	CTGGAG	3 cut(s)	35, 804, 1161
HaeII	RGCGCY	1 cut(s)	152
HapII	CCGG	4 cut(s)	62, 92, 108, 1100
HgaI	GACGC	1 cut(s)	366
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	3 cut(s)	32, 518, 833
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	5 cut(s)	193, 274, 473, 704, 1216
HpaII	CCGG	4 cut(s)	62, 92, 108, 1100
HphI	GGTGA	3 cut(s)	299, 419, 935
Hpy166II	GTNNAC	3 cut(s)	437, 658, 767
Hpy188I	TCNGA	7 cut(s)	24, 254, 271, 364, 432, 960, 1153
Hpy188III	TCNNGA	2 cut(s)	82, 278
Hpy8I	GTNNAC	3 cut(s)	437, 658, 767
HpyAV	CCTTC	5 cut(s)	91, 341, 438, 563, 1180
HpyCH4III	ACNGT	4 cut(s)	53, 73, 771, 919
HpyCH4IV	ACGT	3 cut(s)	469, 949, 1039
HpyCH4V	TGCA	9 cut(s)	67, 635, 737, 742, 757, 793, 837, 903, 1171
HpyF10VI	GCNNNNNNNGC	3 cut(s)	491, 834, 1196
HpyF3I	CTNAG	6 cut(s)	21, 44, 270, 507, 519, 689
HpySE526I	ACGT	3 cut(s)	469, 949, 1039
Hsp92II	CATG	3 cut(s)	32, 518, 833
HspAI	GCGC	1 cut(s)	149
KpnI	GGTACC	1 cut(s)	897
Kzo9I	GATC	7 cut(s)	502, 604, 615, 692, 795, 960, 1045
LmnI	GCTCC	1 cut(s)	1168
Lsp1109I	GCAGC	2 cut(s)	1183, 1183
LweI	GCATC	4 cut(s)	364, 405, 497, 675
MaeI	CTAG	3 cut(s)	465, 708, 1115
MaeII	ACGT	3 cut(s)	469, 949, 1039
MaeIII	GTNAC	3 cut(s)	407, 913, 1117
MalI	GATC	7 cut(s)	504, 606, 617, 694, 797, 962, 1047
MboI	GATC	7 cut(s)	502, 604, 615, 692, 795, 960, 1045
MboII	GAAGA	9 cut(s)	149, 188, 340, 364, 468, 820, 1020, 1096, 1129
MflI	RGATCY	4 cut(s)	615, 692, 795, 960
MluCI	AATT	4 cut(s)	130, 369, 556, 855
MlyI	GAGTC	2 cut(s)	482, 713
MmeI	TCCRAC	1 cut(s)	410
MseI	TTAA	2 cut(s)	213, 650
MspA1I	CMGCKG	3 cut(s)	494, 805, 1206
MspI	CCGG	4 cut(s)	62, 92, 108, 1100
MspR9I	CCNGG	3 cut(s)	108, 783, 1101
Mva1269I	GAATGC	2 cut(s)	294, 795
MvaI	CCWGG	1 cut(s)	783
MwoI	GCNNNNNNNGC	3 cut(s)	491, 834, 1196
NciI	CCSGG	2 cut(s)	108, 1101
NdeII	GATC	7 cut(s)	502, 604, 615, 692, 795, 960, 1045
NlaIII	CATG	3 cut(s)	32, 518, 833
NlaIV	GGNNCC	4 cut(s)	780, 895, 962, 1164
NmuCI	GTSAC	2 cut(s)	407, 1117
NspI	RCATGY	1 cut(s)	518
PctI	GAATGC	2 cut(s)	294, 795
PfeI	GAWTC	3 cut(s)	193, 274, 1216
PflFI	GACNNNGTC	1 cut(s)	1115
PflMI	CCANNNNNTGG	2 cut(s)	881, 1004
PkrI	GCNGC	4 cut(s)	487, 946, 1173, 1198
PleI	GAGTC	2 cut(s)	481, 712
PpsI	GAGTC	2 cut(s)	481, 712
Ppu21I	YACGTR	2 cut(s)	950, 1040
PshAI	GACNNNNGTC	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	781
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	781
PspN4I	GGNNCC	4 cut(s)	780, 895, 962, 1164
PstI	CTGCAG	1 cut(s)	759
PstNI	CAGNNNCTG	1 cut(s)	51
PsuI	RGATCY	4 cut(s)	615, 692, 795, 960
PsyI	GACNNNGTC	1 cut(s)	1115
PvuII	CAGCTG	2 cut(s)	494, 805
RsaI	GTAC	4 cut(s)	436, 543, 895, 1064
RsaNI	GTAC	4 cut(s)	435, 542, 894, 1063
SaqAI	TTAA	2 cut(s)	213, 650
SatI	GCNGC	4 cut(s)	486, 945, 1172, 1197
Sau3AI	GATC	7 cut(s)	502, 604, 615, 692, 795, 960, 1045
SchI	GAGTC	2 cut(s)	482, 713
ScrFI	CCNGG	3 cut(s)	108, 783, 1101
SfaNI	GCATC	4 cut(s)	364, 405, 497, 675
SfcI	CTRYAG	1 cut(s)	755
SgrAI	CRCCGGYG	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	619
SmoI	CTYRAG	1 cut(s)	619
Sse9I	AATT	4 cut(s)	130, 369, 556, 855
SsiI	CCGC	7 cut(s)	59, 164, 242, 485, 799, 944, 1206
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	3 cut(s)	465, 708, 1115
StyD4I	CCNGG	3 cut(s)	106, 781, 1099
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	4 cut(s)	53, 73, 771, 919
TaiI	ACGT	3 cut(s)	472, 952, 1042
TaqI	TCGA	1 cut(s)	188
TasI	AATT	4 cut(s)	130, 369, 556, 855
TatI	WGTACW	1 cut(s)	434
TauI	GCSGC	2 cut(s)	488, 947
TfiI	GAWTC	3 cut(s)	193, 274, 1216
Tru1I	TTAA	2 cut(s)	213, 650
Tru9I	TTAA	2 cut(s)	213, 650
TscAI	CASTG	4 cut(s)	18, 40, 924, 1185
TseFI	GTSAC	2 cut(s)	407, 1117
TseI	GCWGC	2 cut(s)	1171, 1196
Tsp45I	GTSAC	2 cut(s)	407, 1117
TspDTI	ATGAA	5 cut(s)	254, 609, 867, 1123, 1129
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	4 cut(s)	18, 40, 924, 1185
Tth111I	GACNNNGTC	1 cut(s)	1115
Van91I	CCANNNNNTGG	2 cut(s)	881, 1004
XapI	RAATTY	1 cut(s)	556
XceI	RCATGY	1 cut(s)	518
XspI	CTAG	3 cut(s)	465, 708, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.