Rh7CG021700

RNA-binding protein NOB1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001896
Physical Location & Seq
Reverse (-)
1579192 .. 1584761
5570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG021700.1

Sequence Viewer

Length: 1236 bp
ATGGACGCCACCGTCACCCCAGCCCCAGCCTCCAGTTGGAGCAACATCGTGAAGAAGCAGCCAGACCCAAAGCCCCAAAACTCCTCCACCACCAAAGTCTTGGTCGAAAGCTGCAAGTCCTCCAAGGGCATAGCCGTCGCAGTCGTCGACGCCAATGCTATCATTCAGGGCGGCGAGACCCTCGCCCACTGCGCCGACAAGTTCGTCTCCATCCCCGAGGTCATCGACGAAGAGGTCCGTGACCCTATTTCCCGCCACCGCCTCGCCCTCCTTCCCTTCCAAGTCCACACCATGGAGCCCTCCCCTGAATATCGCGATAAAGTTGAAAAGTTTGCGAGGGCTACTGGAGATTACCAGTCACTGTCAGGGGTTGATATTCGTCTTATTGCTATGACATATACACTGGAGGCTCAGATACATGGCACTGAGCACCTCAGGGACTGTCCTCCGCCGGTGCATACTGTCAATGTCAGGAGGTTGCCGGAGAAGGACTTGCCCGGCTGGGAAAATAATGTCCCCAATTTGGAAGAGTGGGAAGCGCTGGAAAACAAAGCGGAGGATAAGAGCAACTCTGTTTCGAGGATTCGTCCGTTGAAAGATATCAACTTGAATGTTTCTGTTGATGGTTCTGCGGTGGAAATCAGAAGTGATGTTCATTCTGAGAATCAGGAGGGTGGTGAGGGCATTCAGGGGAGATATAGGAGATATTTTCCAAAGAAGAAAGAGATAAATATTGAAGGGAAGATGGTTTCTGATGGAATTGATGCGTCCCAAGGACAAGTTGATGATAATACTGGTGACTGGATGCCTGCTGTTAGTCGGAGTACACATAGAAGGTTTTTGAGAAGAAAAGCTAGACGTGAGTCTTATGAGGCGGCATCAGCTGATAATGATCCTCAGCTACATGCTGAGGAAAACACAAGTGGTGGCGTACTTGTGGATGTGAATTTTTCTGTTCAAGGAGATGAGGTTGAAATGATAAATGAAAGGCTGGATCACTTGGAGATCTCAAGCGATAATGGTGCAAGTGTTGATACATTAAATGTGAATGATGATAGTAGTGAGCAGAGCTGGATGCTGAGATCCTTGTATGAGTCTAGTGTAGCTTGTATAACAAGTGATTTTGCAATGCAAAATGTTATTCTGCAGATGGGTTTACGGTTGTTGGCACCTGGAGGAATGCAGATCCGCCAGCTGAAGAGGTATTTGTTTTATACATATACCCCATTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOB1_Zn_bind PIN_6

Protein Analysis

411

Amino Acids

45.93

Weight (kDa)

5.12

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIN_6 PF17146 48 - 135 2.1e-24 PIN domain of ribonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 11, 203, 233
AccB1I GGYRCC 1 cut(s) 1168
AccB7I CCANNNNNTGG 1 cut(s) 292
AccI GTMKAC 1 cut(s) 147
AccII CGCG 1 cut(s) 315
AciI CCGC 8 cut(s) 171, 253, 259, 449, 554, 632, 875, 1189
AclWI GGATC 4 cut(s) 887, 1002, 1077, 1180
AcsI RAATTY 1 cut(s) 946
AcuI CTGAAG 1 cut(s) 1217
AcyI GRCGYC 2 cut(s) 6, 150
AfaI GTAC 2 cut(s) 826, 933
AfeI AGCGCT 1 cut(s) 540
AfiI CCNNNNNNNGG 3 cut(s) 36, 292, 523
AgsI TTSAA 6 cut(s) 326, 595, 610, 737, 959, 974
AjiI CACGTC 1 cut(s) 860
AjnI CCWGG 1 cut(s) 1171
AluBI AGCT 7 cut(s) 111, 854, 884, 901, 1071, 1106, 1195
AluI AGCT 7 cut(s) 111, 854, 884, 901, 1071, 1106, 1195
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 2 cut(s) 170, 211
AlwI GGATC 4 cut(s) 887, 1002, 1077, 1180
AlwNI CAGNNNCTG 2 cut(s) 361, 441
Ama87I CYCGRG 1 cut(s) 215
Aor51HI AGCGCT 1 cut(s) 540
ApeKI GCWGC 2 cut(s) 58, 111
ApoI RAATTY 1 cut(s) 946
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
AspLEI GCGC 2 cut(s) 194, 541
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 1 cut(s) 498
AsuHPI GGTGA 3 cut(s) 7, 689, 809
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 235
AxyI CCTNAGG 1 cut(s) 434
BanI GGYRCC 1 cut(s) 1168
BanII GRGCYC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 432
BbvCI CCTCAGC 2 cut(s) 897, 909
BbvI GCAGC 2 cut(s) 70, 98
BccI CCATC 5 cut(s) 218, 617, 739, 749, 1144
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 6 cut(s) 118, 137, 152, 171, 1004, 1038
BciT130I CCWGG 1 cut(s) 1173
BcnI CCSGG 1 cut(s) 498
BcoDI GTCTC 2 cut(s) 170, 211
BfaI CTAG 2 cut(s) 855, 1098
BfmI CTRYAG 1 cut(s) 1145
BfoI RGCGCY 1 cut(s) 542
BglII AGATCT 1 cut(s) 1005
BisI GCNGC 4 cut(s) 59, 112, 172, 876
BlsI GCNGC 4 cut(s) 60, 113, 173, 877
Bme1390I CCNGG 2 cut(s) 498, 1173
Bme18I GGWCC 1 cut(s) 235
BmeT110I CYCGRG 1 cut(s) 215
BmgBI CACGTC 1 cut(s) 860
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 2 cut(s) 297, 1170
BmrFI CCNGG 2 cut(s) 498, 1173
BmsI GCATC 4 cut(s) 754, 795, 887, 1065
BoxI GACNNNNGTC 1 cut(s) 862
BpmI CTGGAG 4 cut(s) 16, 366, 425, 1194
Bpu10I CCTNAGC 2 cut(s) 897, 909
BpuEI CTTGAG 1 cut(s) 994
BpuMI CCSGG 1 cut(s) 498
BsaBI GATNNNNATC 1 cut(s) 891
BsaHI GRCGYC 2 cut(s) 6, 150
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 4 cut(s) 123, 216, 291, 772
BsaXI ACNNNNNCTCC 2 cut(s) 954, 984
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 292, 523
Bse118I RCCGGY 1 cut(s) 451
Bse1I ACTGG 6 cut(s) 33, 349, 355, 408, 799, 806
Bse21I CCTNAGG 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 1134
Bse8I GATNNNNATC 1 cut(s) 891
BseBI CCWGG 1 cut(s) 1173
BseDI CCNNGG 4 cut(s) 123, 216, 291, 772
BseGI GGATG 4 cut(s) 210, 810, 946, 1080
BseJI GATNNNNATC 1 cut(s) 891
BseLI CCNNNNNNNGG 3 cut(s) 36, 292, 523
BseMI GCAATG 1 cut(s) 1134
BseMII CTCAG 7 cut(s) 417, 425, 448, 651, 900, 911, 1070
BseNI ACTGG 6 cut(s) 33, 349, 355, 408, 799, 806
BseRI GAGGAG 1 cut(s) 73
BseXI GCAGC 2 cut(s) 70, 98
BseYI CCCAGC 3 cut(s) 19, 25, 501
Bsh1236I CGCG 1 cut(s) 315
BshNI GGYRCC 1 cut(s) 1168
BsiHKAI GWGCWC 1 cut(s) 432
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 3 cut(s) 452, 482, 498
BslFI GGGAC 3 cut(s) 452, 500, 754
BslI CCNNNNNNNGG 3 cut(s) 36, 292, 523
BsmAI GTCTC 2 cut(s) 170, 211
BsmBI CGTCTC 1 cut(s) 211
BsmFI GGGAC 3 cut(s) 452, 500, 754
BsmI GAATGC 2 cut(s) 684, 1185
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 300, 432
Bsp143I GATC 5 cut(s) 892, 994, 1005, 1082, 1185
Bsp19I CCATGG 1 cut(s) 291
Bsp68I TCGCGA 1 cut(s) 315
BspACI CCGC 8 cut(s) 171, 253, 259, 449, 554, 632, 875, 1189
BspCNI CTCAG 7 cut(s) 418, 424, 447, 652, 901, 910, 1071
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 2 cut(s) 297, 1170
BspMAI CTGCAG 1 cut(s) 1149
BspPI GGATC 4 cut(s) 887, 1002, 1077, 1180
BspT107I GGYRCC 1 cut(s) 1168
BspTNI GGTCTC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 1134
BsrFI RCCGGY 1 cut(s) 451
BsrI ACTGG 6 cut(s) 33, 349, 355, 408, 799, 806
BssAI RCCGGY 1 cut(s) 451
BssECI CCNNGG 4 cut(s) 123, 216, 291, 772
BssMI GATC 5 cut(s) 892, 994, 1005, 1082, 1185
BssNI GRCGYC 2 cut(s) 6, 150
BssT1I CCWWGG 3 cut(s) 123, 291, 772
Bst2UI CCWGG 1 cut(s) 1173
Bst4CI ACNGT 5 cut(s) 13, 363, 443, 463, 1161
Bst6I CTCTTC 3 cut(s) 225, 522, 1193
BstACI GRCGYC 2 cut(s) 6, 150
BstC8I GCNNGC 2 cut(s) 810, 1193
BstDEI CTNAG 7 cut(s) 411, 426, 434, 660, 897, 909, 1079
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 4 cut(s) 210, 810, 946, 1080
BstFNI CGCG 1 cut(s) 315
BstH2I RGCGCY 1 cut(s) 542
BstHHI GCGC 2 cut(s) 194, 541
BstKTI GATC 5 cut(s) 895, 997, 1008, 1085, 1188
BstMAI GTCTC 2 cut(s) 170, 211
BstMBI GATC 5 cut(s) 892, 994, 1005, 1082, 1185
BstMWI GCNNNNNNNGC 2 cut(s) 191, 881
BstNI CCWGG 1 cut(s) 1173
BstNSI RCATGY 1 cut(s) 908
BstPAI GACNNNNGTC 1 cut(s) 862
BstSCI CCNGG 2 cut(s) 496, 1171
BstSFI CTRYAG 1 cut(s) 1145
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 2 cut(s) 70, 98
BstX2I RGATCY 3 cut(s) 1005, 1082, 1185
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 3 cut(s) 1005, 1082, 1185
Bsu36I CCTNAGG 1 cut(s) 434
BtgI CCRYGG 1 cut(s) 291
BtrI CACGTC 1 cut(s) 860
BtsCI GGATG 4 cut(s) 210, 810, 946, 1080
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 4 cut(s) 187, 359, 401, 423
BtuMI TCGCGA 1 cut(s) 315
Cac8I GCNNGC 2 cut(s) 810, 1193
CaiI CAGNNNCTG 2 cut(s) 361, 441
CfoI GCGC 2 cut(s) 194, 541
Cfr10I RCCGGY 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 3 cut(s) 14, 158, 756
Csp6I GTAC 2 cut(s) 825, 932
CviAII CATG 3 cut(s) 292, 419, 905
CviQI GTAC 2 cut(s) 825, 932
DdeI CTNAG 7 cut(s) 411, 426, 434, 660, 897, 909, 1079
DpnI GATC 5 cut(s) 894, 996, 1007, 1084, 1187
DpnII GATC 5 cut(s) 892, 994, 1005, 1082, 1185
DrdI GACNNNNNNGTC 3 cut(s) 11, 203, 233
DseDI GACNNNNNNGTC 3 cut(s) 11, 203, 233
Eam1104I CTCTTC 3 cut(s) 225, 522, 1193
EarI CTCTTC 3 cut(s) 225, 522, 1193
EciI GGCGGA 2 cut(s) 438, 1178
Eco130I CCWWGG 3 cut(s) 123, 291, 772
Eco24I GRGCYC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 170
Eco32I GATATC 1 cut(s) 601
Eco47I GGWCC 1 cut(s) 235
Eco47III AGCGCT 1 cut(s) 540
Eco57I CTGAAG 1 cut(s) 1217
Eco81I CCTNAGG 1 cut(s) 434
Eco88I CYCGRG 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 1171
EcoRV GATATC 1 cut(s) 601
EcoT14I CCWWGG 3 cut(s) 123, 291, 772
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 3 cut(s) 123, 291, 772
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 3 cut(s) 295, 422, 908
FaqI GGGAC 3 cut(s) 452, 500, 754
FatI CATG 3 cut(s) 291, 418, 904
FauI CCCGC 1 cut(s) 260
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 4 cut(s) 59, 112, 172, 876
FokI GGATG 4 cut(s) 197, 817, 953, 1087
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 4 cut(s) 59, 112, 172, 876
FspBI CTAG 2 cut(s) 855, 1098
GlaI GCGC 2 cut(s) 193, 540
GluI GCNGC 4 cut(s) 59, 112, 172, 876
GsaI CCCAGC 3 cut(s) 23, 29, 505
GsuI CTGGAG 4 cut(s) 16, 366, 425, 1194
HaeII RGCGCY 1 cut(s) 542
HapII CCGG 3 cut(s) 452, 482, 498
HgaI GACGC 3 cut(s) 14, 158, 756
HhaI GCGC 2 cut(s) 194, 541
Hin1I GRCGYC 2 cut(s) 6, 150
Hin1II CATG 3 cut(s) 295, 422, 908
Hin6I GCGC 2 cut(s) 192, 539
HinP1I GCGC 2 cut(s) 192, 539
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 4 cut(s) 583, 664, 863, 1094
HpaII CCGG 3 cut(s) 452, 482, 498
HphI GGTGA 3 cut(s) 7, 689, 809
Hpy166II GTNNAC 4 cut(s) 148, 286, 827, 1157
Hpy188I TCNGA 5 cut(s) 414, 644, 661, 754, 822
Hpy188III TCNNGA 4 cut(s) 49, 314, 472, 668
Hpy8I GTNNAC 4 cut(s) 148, 286, 827, 1157
Hpy99I CGWCG 4 cut(s) 140, 149, 152, 230
HpyAV CCTTC 5 cut(s) 281, 286, 481, 731, 828
HpyCH4III ACNGT 5 cut(s) 13, 363, 443, 463, 1161
HpyCH4IV ACGT 1 cut(s) 859
HpyCH4V TGCA 7 cut(s) 114, 457, 1025, 1127, 1132, 1147, 1183
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 881
HpyF3I CTNAG 7 cut(s) 411, 426, 434, 660, 897, 909, 1079
HpySE526I ACGT 1 cut(s) 859
Hsp92I GRCGYC 2 cut(s) 6, 150
Hsp92II CATG 3 cut(s) 295, 422, 908
HspAI GCGC 2 cut(s) 192, 539
Kzo9I GATC 5 cut(s) 892, 994, 1005, 1082, 1185
LmnI GCTCC 2 cut(s) 39, 295
Lsp1109I GCAGC 2 cut(s) 70, 98
LweI GCATC 4 cut(s) 754, 795, 887, 1065
MaeI CTAG 2 cut(s) 855, 1098
MaeII ACGT 1 cut(s) 859
MaeIII GTNAC 4 cut(s) 13, 239, 357, 797
MalI GATC 5 cut(s) 894, 996, 1007, 1084, 1187
MboI GATC 5 cut(s) 892, 994, 1005, 1082, 1185
MboII GAAGA 7 cut(s) 64, 242, 539, 730, 754, 858, 1210
MflI RGATCY 3 cut(s) 1005, 1082, 1185
MhlI GDGCHC 2 cut(s) 300, 432
MluCI AATT 3 cut(s) 520, 759, 946
MlyI GAGTC 2 cut(s) 872, 1103
MmeI TCCRAC 2 cut(s) 17, 800
MseI TTAA 2 cut(s) 1040, 1234
MspA1I CMGCKG 2 cut(s) 884, 1195
MspI CCGG 3 cut(s) 452, 482, 498
MspR9I CCNGG 2 cut(s) 498, 1173
Mva1269I GAATGC 2 cut(s) 684, 1185
MvaI CCWGG 1 cut(s) 1173
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 2 cut(s) 191, 881
NciI CCSGG 1 cut(s) 498
NcoI CCATGG 1 cut(s) 291
NdeII GATC 5 cut(s) 892, 994, 1005, 1082, 1185
NlaIII CATG 3 cut(s) 295, 422, 908
NlaIV GGNNCC 2 cut(s) 297, 1170
NmuCI GTSAC 4 cut(s) 13, 239, 357, 797
NruI TCGCGA 1 cut(s) 315
NspI RCATGY 1 cut(s) 908
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 2 cut(s) 684, 1185
PfeI GAWTC 2 cut(s) 583, 664
PflMI CCANNNNNTGG 1 cut(s) 292
PkrI GCNGC 4 cut(s) 60, 113, 173, 877
PleI GAGTC 2 cut(s) 871, 1102
PpsI GAGTC 2 cut(s) 871, 1102
PshAI GACNNNNGTC 1 cut(s) 862
Psp6I CCWGG 1 cut(s) 1171
PspFI CCCAGC 3 cut(s) 19, 25, 501
PspGI CCWGG 1 cut(s) 1171
PspN4I GGNNCC 2 cut(s) 297, 1170
PspPI GGNCC 1 cut(s) 235
PstI CTGCAG 1 cut(s) 1149
PstNI CAGNNNCTG 2 cut(s) 361, 441
PsuI RGATCY 3 cut(s) 1005, 1082, 1185
PvuII CAGCTG 2 cut(s) 884, 1195
RruI TCGCGA 1 cut(s) 315
RsaI GTAC 2 cut(s) 826, 933
RsaNI GTAC 2 cut(s) 825, 932
SalI GTCGAC 1 cut(s) 146
SaqAI TTAA 2 cut(s) 1040, 1234
SatI GCNGC 4 cut(s) 59, 112, 172, 876
Sau3AI GATC 5 cut(s) 892, 994, 1005, 1082, 1185
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 2 cut(s) 872, 1103
ScrFI CCNGG 2 cut(s) 498, 1173
SduI GDGCHC 2 cut(s) 300, 432
SfaNI GCATC 4 cut(s) 754, 795, 887, 1065
SfcI CTRYAG 1 cut(s) 1145
SgrAI CRCCGGYG 1 cut(s) 451
SgrDI CGTCGACG 1 cut(s) 146
SinI GGWCC 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 1009
SmoI CTYRAG 1 cut(s) 1009
Sse9I AATT 3 cut(s) 520, 759, 946
SsiI CCGC 8 cut(s) 171, 253, 259, 449, 554, 632, 875, 1189
SspI AATATT 1 cut(s) 733
SspMI CTAG 2 cut(s) 855, 1098
StyD4I CCNGG 2 cut(s) 496, 1171
StyI CCWWGG 3 cut(s) 123, 291, 772
TaaI ACNGT 5 cut(s) 13, 363, 443, 463, 1161
TaiI ACGT 1 cut(s) 862
TaqI TCGA 4 cut(s) 105, 147, 225, 578
TasI AATT 3 cut(s) 520, 759, 946
TatI WGTACW 1 cut(s) 824
TauI GCSGC 2 cut(s) 174, 878
TfiI GAWTC 2 cut(s) 583, 664
Tru1I TTAA 2 cut(s) 1040, 1234
Tru9I TTAA 2 cut(s) 1040, 1234
TscAI CASTG 4 cut(s) 194, 366, 408, 430
TseFI GTSAC 4 cut(s) 13, 239, 357, 797
TseI GCWGC 2 cut(s) 58, 111
Tsp45I GTSAC 4 cut(s) 13, 239, 357, 797
TspDTI ATGAA 2 cut(s) 644, 999
TspGWI ACGGA 2 cut(s) 227, 579
TspRI CASTG 4 cut(s) 194, 366, 408, 430
Van91I CCANNNNNTGG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 235
XapI RAATTY 1 cut(s) 946
XceI RCATGY 1 cut(s) 908
XcmI CCANNNNNNNNNTGG 2 cut(s) 33, 97
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 2 cut(s) 855, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.