Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001896

Physical Location & Seq

Genomic Coordinates Forward (+)

42238528 .. 42239148

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002953

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGACGAGGTCCGTGACCCTGTTTCCCTCCACCGTCTCGTCGTCGTTCCCTTCCAAGTCCAGACCATGGAACCCTCCCCTGAATCCTCAATAAAGACATTGCCAGATGTGTATGTTAAGCTCATTGCTATCACTTATACATTGGAGGCTCAGATACATGGCCCTAAGCACCTCAGGGACTGTCCTCCGCTGGTGCATATTGTCAATGTGAAGAGGTTGCCAGAGAAGGACTTGCCCGGGTGGGGAAATAATGTGCCTAATTTGGAGGAGTGGGAAGCGCTGGAGAACGAAGCAGAGGATAAGTTGAACCCCAGTTCGAGGATTCTTCCGCTGAAAGATATAAACTTGAATGTTATTGAGGATTCTAAGAGCCATTCTGTTGATGGTTCTTCGGTGGAAGTTAGGAGTGATGTTCGTTCTGAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

NOB1_Zn_bind PIN_6

Protein Analysis

143

Amino Acids

16.0

Weight (kDa)

4.96

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41190
fragaria_vesca	FvH4_5g23090
malus_domestica	MD14G1101800.v1.1
prunus_persica	Prupe.5G097400_v2.0.a1
pyrus_communis	pycom06g07650 pycom14g09860
rosa_chinensis	RchiOBHm_Chr2g0099081 RchiOBHm_Chr7g0179141 RchiOBHm_Chr7g0211871 RchiOBHm_Chr7g0211921 RchiOBHm_Chr7g0211961
rosa_laevigata	RLG00000002953 RLG00000002956 RLG00000005381 RLG00000016846 RLG00000021575
rosa_multiflora	Rmu_sc0000888.1_g000019 Rmu_sc0009005.1_g000003 Rmu_sc0017524.1_g000001 Rmu_sc0018807.1_g000007 Rmu_sc0022966.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143460 Rroxscaffold_3G00247290 Rroxscaffold_3G00247320 Rroxscaffold_3G00274270 Rroxscaffold_3G00274340
rosa_rugosa	Rorug02G0076500 Rorug06G0421300 Rorug07G0129500 Rorug07G0129600
rosa_samantha	Rh2AG125600 Rh2BG128900 Rh2CG129900 Rh2DG130300 Rh7AG020500 Rh7AG262400 Rh7BG020600 Rh7BG255900 Rh7CG021700 Rh7CG278400 Rh7DG021100 Rh7DG268900 Rh7DG269200
rosa_wichuraiana	Rw7G001720 Rw7G022370 Rw7G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	67
AciI	CCGC	2 cut(s)	188, 329
AfeI	AGCGCT	1 cut(s)	279
AfiI	CCNNNNNNNGG	3 cut(s)	67, 242, 318
AgsI	TTSAA	2 cut(s)	307, 349
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	180
Ama87I	CYCGRG	1 cut(s)	236
Aor51HI	AGCGCT	1 cut(s)	279
AoxI	GGCC	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	2 cut(s)	10, 161
AsuC2I	CCSGG	2 cut(s)	237, 238
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	10
AxyI	CCTNAGG	1 cut(s)	173
BccI	CCATC	1 cut(s)	377
BcnI	CCSGG	2 cut(s)	237, 238
BcoDI	GTCTC	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	237, 238
Bme18I	GGWCC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	10, 161
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	237, 238
BmrI	ACTGGG	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	165
BpuMI	CCSGG	2 cut(s)	237, 238
BsaJI	CCNNGG	2 cut(s)	66, 236
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 242, 318
Bse1I	ACTGG	1 cut(s)	312
Bse21I	CCTNAGG	1 cut(s)	173
Bse3DI	GCAATG	2 cut(s)	98, 123
BseDI	CCNNGG	2 cut(s)	66, 236
BseLI	CCNNNNNNNGG	3 cut(s)	67, 242, 318
BseMI	GCAATG	2 cut(s)	98, 123
BseMII	CTCAG	3 cut(s)	164, 187, 411
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	3 cut(s)	67, 242, 318
BsmAI	GTCTC	1 cut(s)	41
BsmBI	CGTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	162
BsoBI	CYCGRG	1 cut(s)	236
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	2 cut(s)	188, 329
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	3 cut(s)	163, 186, 412
BspLI	GGNNCC	1 cut(s)	72
BsrDI	GCAATG	2 cut(s)	98, 123
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	66, 236
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	2 cut(s)	35, 182
Bst6I	CTCTTC	1 cut(s)	206
BstDEI	CTNAG	5 cut(s)	150, 165, 173, 366, 420
BstDSI	CCRYGG	1 cut(s)	66
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	235, 236
Bsu36I	CCTNAGG	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	66
CaiI	CAGNNNCTG	1 cut(s)	180
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	10, 161
Cfr9I	CCCGGG	1 cut(s)	236
CviAII	CATG	2 cut(s)	67, 158
CviJI	RGCY	4 cut(s)	121, 149, 162, 372
CviKI_1	RGCY	4 cut(s)	121, 149, 162, 372
DdeI	CTNAG	5 cut(s)	150, 165, 173, 366, 420
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	10
Eco47III	AGCGCT	1 cut(s)	279
Eco81I	CCTNAGG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	2 cut(s)	70, 161
FaiI	YATR	6 cut(s)	68, 114, 138, 159, 198, 341
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	2 cut(s)	66, 157
GlaI	GCGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	302
HaeII	RGCGCY	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	1 cut(s)	237
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	2 cut(s)	70, 161
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HinfI	GANTC	3 cut(s)	83, 322, 362
HpaII	CCGG	1 cut(s)	237
Hpy188I	TCNGA	2 cut(s)	153, 421
Hpy188III	TCNNGA	1 cut(s)	61
Hpy99I	CGWCG	2 cut(s)	44, 47
HpyAV	CCTTC	2 cut(s)	61, 220
HpyCH4III	ACNGT	2 cut(s)	35, 182
HpyCH4V	TGCA	1 cut(s)	196
HpyF3I	CTNAG	5 cut(s)	150, 165, 173, 366, 420
Hsp92II	CATG	2 cut(s)	70, 161
HspAI	GCGC	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	14
MboII	GAAGA	3 cut(s)	223, 317, 381
MluCI	AATT	2 cut(s)	259, 424
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	2 cut(s)	190, 331
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	2 cut(s)	237, 238
NciI	CCSGG	2 cut(s)	237, 238
NcoI	CCATGG	1 cut(s)	66
NlaIII	CATG	2 cut(s)	70, 161
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	83, 322, 362
PflFI	GACNNNGTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	2 cut(s)	10, 161
PstNI	CAGNNNCTG	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	117
Sau96I	GGNCC	2 cut(s)	10, 161
ScrFI	CCNGG	2 cut(s)	237, 238
SetI	ASST	4 cut(s)	12, 123, 174, 218
SinI	GGWCC	1 cut(s)	10
SmaI	CCCGGG	1 cut(s)	238
Sse9I	AATT	2 cut(s)	259, 424
SsiI	CCGC	2 cut(s)	188, 329
StyD4I	CCNGG	2 cut(s)	235, 236
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	2 cut(s)	35, 182
TaqI	TCGA	1 cut(s)	317
TasI	AATT	2 cut(s)	259, 424
TfiI	GAWTC	3 cut(s)	83, 322, 362
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	14
TspMI	CCCGGG	1 cut(s)	236
Tth111I	GACNNNGTC	1 cut(s)	8
Van91I	CCANNNNNTGG	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	10
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmaI	CCCGGG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.