Rmu_sc0018807.1_g000007

RNA-binding protein NOB1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018807.1
OG0001896
Physical Location & Seq
Forward (+)
21194 .. 21652
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018807.1_g000007.1.cds

Sequence Viewer

Length: 408 bp
atgacttatacattggaggctcatatacatggcactgagcacctcagggactatcctccgctgggaaataatgtgcctaatttggaagagtgggaagcgttggagaacgaagcggaggataagttgaacaccagttcgaggattcttccgttgaaagatataaacttgaatgttattgaggattttgagagccgttctgttgatggttatgcggtggaagttaggagtgatgttcgttttgagaataaggagggtggtgaaggcattcaggggagacataagagatattttccaaagaagaaagagataaagattgaagggaagatggtttctgatggaattgatgcatcccaaggacaagctgatgataatgccggtgattggatgcctgagatgatttcctggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOB1_Zn_bind PIN_6

Protein Analysis

135

Amino Acids

15.4

Weight (kDa)

4.7

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 59, 113, 212
AfiI CCNNNNNNNGG 3 cut(s) 62, 138, 381
AgsI TTSAA 4 cut(s) 127, 154, 169, 317
AjnI CCWGG 1 cut(s) 401
AluBI AGCT 1 cut(s) 362
AluI AGCT 1 cut(s) 362
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 268
Asp700I GAANNNNTTC 1 cut(s) 264
AsuHPI GGTGA 2 cut(s) 269, 389
AxyI CCTNAGG 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 42
BccI CCATC 3 cut(s) 197, 319, 329
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 403
BmrFI CCNGG 1 cut(s) 403
BmsI GCATC 3 cut(s) 334, 356, 375
BsaJI CCNNGG 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 138, 381
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 132
Bse21I CCTNAGG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 403
BseDI CCNNGG 1 cut(s) 352
BseGI GGATG 2 cut(s) 347, 390
BseLI CCNNNNNNNGG 3 cut(s) 62, 138, 381
BseMII CTCAG 3 cut(s) 27, 58, 381
BseNI ACTGG 1 cut(s) 132
BseYI CCCAGC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 375
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 3 cut(s) 62, 138, 381
BsmAI GTCTC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 62
BsmI GAATGC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 42
BspACI CCGC 3 cut(s) 59, 113, 212
BspCNI CTCAG 3 cut(s) 28, 57, 382
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 403
Bst6I CTCTTC 1 cut(s) 81
BstDEI CTNAG 3 cut(s) 36, 44, 390
BstF5I GGATG 2 cut(s) 347, 390
BstMAI GTCTC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 401
Bsu36I CCTNAGG 1 cut(s) 44
BtsCI GGATG 2 cut(s) 347, 390
BtsIMutI CAGTG 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 374
CviAII CATG 1 cut(s) 29
CviJI RGCY 3 cut(s) 20, 192, 362
CviKI_1 RGCY 3 cut(s) 20, 192, 362
DdeI CTNAG 3 cut(s) 36, 44, 390
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 352
Eco81I CCTNAGG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 1 cut(s) 32
FaiI YATR 7 cut(s) 9, 24, 26, 30, 161, 210, 279
FaqI GGGAC 1 cut(s) 62
FatI CATG 1 cut(s) 28
FokI GGATG 2 cut(s) 334, 397
GsaI CCCAGC 1 cut(s) 65
HapII CCGG 1 cut(s) 375
Hin1II CATG 1 cut(s) 32
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 375
HphI GGTGA 2 cut(s) 269, 389
Hpy188I TCNGA 1 cut(s) 334
HpyAV CCTTC 2 cut(s) 254, 311
HpyCH4V TGCA 1 cut(s) 347
HpyF3I CTNAG 3 cut(s) 36, 44, 390
Hsp92II CATG 1 cut(s) 32
LpnPI CCDG 7 cut(s) 31, 47, 145, 254, 388, 388, 402
LweI GCATC 3 cut(s) 334, 356, 375
MboII GAAGA 4 cut(s) 98, 137, 310, 334
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 2 cut(s) 79, 339
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 7 cut(s) 10, 53, 66, 109, 132, 172, 244
Mph1103I ATGCAT 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 1 cut(s) 403
Mva1269I GAATGC 1 cut(s) 264
MvaI CCWGG 1 cut(s) 403
NlaIII CATG 1 cut(s) 32
NsiI ATGCAT 1 cut(s) 349
PctI GAATGC 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 401
PspFI CCCAGC 1 cut(s) 61
PspGI CCWGG 1 cut(s) 401
RseI CAYNNNNRTG 1 cut(s) 27
ScrFI CCNGG 1 cut(s) 403
SduI GDGCHC 1 cut(s) 42
SetI ASST 2 cut(s) 45, 364
SfaNI GCATC 3 cut(s) 334, 356, 375
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 2 cut(s) 79, 339
SsiI CCGC 3 cut(s) 59, 113, 212
StyD4I CCNGG 1 cut(s) 401
StyI CCWWGG 1 cut(s) 352
TaqI TCGA 1 cut(s) 137
TasI AATT 2 cut(s) 79, 339
TfiI GAWTC 1 cut(s) 142
TscAI CASTG 1 cut(s) 40
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 264
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.