Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022966.1

Orthogroup ID

OG0001896

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 989

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022966.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 836 bp

atggacgcaaccgtcaccccagccccaatccccgacccgaacccagctgtctcctgttggagcaacatcgtgaagaagcagccggacccaaagccccaaaactcctccgactcctcctcaatcgccgccggcaaagtattcgtcgaaagctgcaaatcctccaagggcatagccgtcgccgtcgtcgacgccaatgctatcattcaaggcggcgagaccctcgcccactgcgccgacaagttcgtctccgtcccagaggtcatggacgaggtccgtgaccctgtttcccgccaccgcctcgccgtcgttcccttccaagtccagaccatggaaccctcccctgaatccctcaataaagttgttaagtttgcgagggctactggggatttgcagacactgtcagatgtggatgttaagctcattgctatgacttatactttggaggctcagatacatggcactgagcacctcagggactgtcctccgccggtgcataccgtcaatgtgaggaggttgccggagaaggacctgcccgggtggggaaataatgtgccaaatttggaagagtgggaagcgctggagaacgaagcggaggataagttgaaccccagttcgaggattctcccgctgaaagatataaacttgaatgttattgaggattctgagagccgttctgttgatggttctgcggtggaagttacgagtgatgtttgttctgagaatcgggagggtggtgagggcattcaggggagacacaggagatattttccaaagaagaaagagataaagattgaagggaagatggtttcggatggaattgatgcatcccaaggaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

NOB1_Zn_bind PIN_6

Protein Analysis

278

Amino Acids

30.23

Weight (kDa)

5.04

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41190
fragaria_vesca	FvH4_5g23090
malus_domestica	MD14G1101800.v1.1
prunus_persica	Prupe.5G097400_v2.0.a1
pyrus_communis	pycom06g07650 pycom14g09860
rosa_chinensis	RchiOBHm_Chr2g0099081 RchiOBHm_Chr7g0179141 RchiOBHm_Chr7g0211871 RchiOBHm_Chr7g0211921 RchiOBHm_Chr7g0211961
rosa_laevigata	RLG00000002953 RLG00000002956 RLG00000005381 RLG00000016846 RLG00000021575
rosa_multiflora	Rmu_sc0000888.1_g000019 Rmu_sc0009005.1_g000003 Rmu_sc0017524.1_g000001 Rmu_sc0018807.1_g000007 Rmu_sc0022966.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143460 Rroxscaffold_3G00247290 Rroxscaffold_3G00247320 Rroxscaffold_3G00274270 Rroxscaffold_3G00274340
rosa_rugosa	Rorug02G0076500 Rorug06G0421300 Rorug07G0129500 Rorug07G0129600
rosa_samantha	Rh2AG125600 Rh2BG128900 Rh2CG129900 Rh2DG130300 Rh7AG020500 Rh7AG262400 Rh7BG020600 Rh7BG255900 Rh7CG021700 Rh7CG278400 Rh7DG021100 Rh7DG268900 Rh7DG269200
rosa_wichuraiana	Rw7G001720 Rw7G022370 Rw7G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	11, 242
Acc36I	ACCTGC	1 cut(s)	537
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	8 cut(s)	126, 210, 289, 295, 485, 590, 626, 689
AcsI	RAATTY	1 cut(s)	556
AcyI	GRCGYC	1 cut(s)	189
AfeI	AGCGCT	1 cut(s)	576
AfiI	CCNNNNNNNGG	3 cut(s)	328, 539, 615
AgsI	TTSAA	4 cut(s)	206, 604, 646, 794
AluBI	AGCT	3 cut(s)	47, 150, 418
AluI	AGCT	3 cut(s)	47, 150, 418
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	4 cut(s)	55, 209, 250, 745
AlwNI	CAGNNNCTG	2 cut(s)	397, 477
Ama87I	CYCGRG	1 cut(s)	533
Aor51HI	AGCGCT	1 cut(s)	576
ApeKI	GCWGC	2 cut(s)	79, 150
ApoI	RAATTY	1 cut(s)	556
ArsI	GACNNNNNNTTYG	4 cut(s)	126, 158, 421, 453
AspLEI	GCGC	2 cut(s)	233, 577
AspS9I	GGNCC	3 cut(s)	85, 271, 526
AsuC2I	CCSGG	2 cut(s)	534, 535
AsuHPI	GGTGA	2 cut(s)	7, 746
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	3 cut(s)	85, 271, 526
AxyI	CCTNAGG	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	2 cut(s)	91, 137
BccI	CCATC	3 cut(s)	674, 796, 806
BceAI	ACGGC	4 cut(s)	158, 164, 287, 654
BcgI	CGANNNNNNTGC	6 cut(s)	121, 155, 157, 176, 191, 210
BcnI	CCSGG	2 cut(s)	534, 535
BcoDI	GTCTC	4 cut(s)	55, 209, 250, 745
BfoI	RGCGCY	1 cut(s)	578
BfuAI	ACCTGC	1 cut(s)	537
BisI	GCNGC	4 cut(s)	80, 126, 151, 211
BlsI	GCNGC	4 cut(s)	81, 127, 152, 212
Bme1390I	CCNGG	2 cut(s)	534, 535
Bme18I	GGWCC	3 cut(s)	85, 271, 526
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	3 cut(s)	85, 271, 526
BmiI	GGNNCC	2 cut(s)	87, 333
BmrFI	CCNGG	2 cut(s)	534, 535
BmrI	ACTGGG	2 cut(s)	390, 603
BmsI	GCATC	1 cut(s)	811
BmuI	ACTGGG	2 cut(s)	390, 603
BpmI	CTGGAG	1 cut(s)	599
BpuMI	CCSGG	2 cut(s)	534, 535
BsaHI	GRCGYC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	4 cut(s)	162, 327, 533, 829
BsaXI	ACNNNNNCTCC	2 cut(s)	584, 614
Bsc4I	CCNNNNNNNGG	3 cut(s)	328, 539, 615
Bse118I	RCCGGY	2 cut(s)	128, 487
Bse1I	ACTGG	2 cut(s)	385, 609
Bse21I	CCTNAGG	1 cut(s)	470
Bse3DI	GCAATG	1 cut(s)	420
BseDI	CCNNGG	4 cut(s)	162, 327, 533, 829
BseGI	GGATG	3 cut(s)	415, 817, 824
BseLI	CCNNNNNNNGG	3 cut(s)	328, 539, 615
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	5 cut(s)	453, 461, 484, 654, 708
BseNI	ACTGG	2 cut(s)	385, 609
BseRI	GAGGAG	4 cut(s)	94, 103, 106, 523
BseXI	GCAGC	2 cut(s)	91, 137
BseYI	CCCAGC	2 cut(s)	19, 43
BsiHKAI	GWGCWC	1 cut(s)	468
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	5 cut(s)	83, 129, 488, 518, 534
BslFI	GGGAC	2 cut(s)	236, 488
BslI	CCNNNNNNNGG	3 cut(s)	328, 539, 615
BsmAI	GTCTC	4 cut(s)	55, 209, 250, 745
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	2 cut(s)	236, 488
BsmI	GAATGC	1 cut(s)	741
Bso31I	GGTCTC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	8 cut(s)	126, 210, 289, 295, 485, 590, 626, 689
BspCNI	CTCAG	5 cut(s)	454, 460, 483, 655, 709
BspLI	GGNNCC	2 cut(s)	87, 333
BspMI	ACCTGC	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	2 cut(s)	128, 487
BsrI	ACTGG	2 cut(s)	385, 609
BssAI	RCCGGY	2 cut(s)	128, 487
BssECI	CCNNGG	4 cut(s)	162, 327, 533, 829
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	3 cut(s)	162, 327, 829
Bst4CI	ACNGT	4 cut(s)	13, 399, 479, 499
Bst6I	CTCTTC	1 cut(s)	558
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	5 cut(s)	447, 462, 470, 663, 717
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	3 cut(s)	415, 817, 824
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	2 cut(s)	233, 577
BstMAI	GTCTC	4 cut(s)	55, 209, 250, 745
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	532, 533
BstV1I	GCAGC	2 cut(s)	91, 137
Bsu36I	CCTNAGG	1 cut(s)	470
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	3 cut(s)	415, 817, 824
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	3 cut(s)	226, 395, 459
BveI	ACCTGC	1 cut(s)	537
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	2 cut(s)	397, 477
CfoI	GCGC	2 cut(s)	233, 577
Cfr10I	RCCGGY	2 cut(s)	128, 487
Cfr13I	GGNCC	3 cut(s)	85, 271, 526
Cfr9I	CCCGGG	1 cut(s)	533
CseI	GACGC	2 cut(s)	14, 197
CviAII	CATG	3 cut(s)	262, 328, 455
DdeI	CTNAG	5 cut(s)	447, 462, 470, 663, 717
DrdI	GACNNNNNNGTC	2 cut(s)	11, 242
DseDI	GACNNNNNNGTC	2 cut(s)	11, 242
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
EciI	GGCGGA	1 cut(s)	474
Eco130I	CCWWGG	3 cut(s)	162, 327, 829
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	3 cut(s)	85, 271, 526
Eco47III	AGCGCT	1 cut(s)	576
Eco81I	CCTNAGG	1 cut(s)	470
Eco88I	CYCGRG	1 cut(s)	533
EcoO109I	RGGNCCY	1 cut(s)	526
EcoT14I	CCWWGG	3 cut(s)	162, 327, 829
EcoT22I	ATGCAT	1 cut(s)	826
ErhI	CCWWGG	3 cut(s)	162, 327, 829
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	3 cut(s)	265, 331, 458
FaiI	YATR	8 cut(s)	170, 263, 329, 428, 435, 456, 495, 638
FaqI	GGGAC	2 cut(s)	236, 488
FatI	CATG	3 cut(s)	261, 327, 454
FauI	CCCGC	2 cut(s)	296, 633
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	4 cut(s)	80, 126, 151, 211
FokI	GGATG	3 cut(s)	422, 811, 824
Fsp4HI	GCNGC	4 cut(s)	80, 126, 151, 211
GlaI	GCGC	2 cut(s)	232, 576
GluI	GCNGC	4 cut(s)	80, 126, 151, 211
GsaI	CCCAGC	2 cut(s)	23, 47
GsuI	CTGGAG	1 cut(s)	599
HaeII	RGCGCY	1 cut(s)	578
HapII	CCGG	5 cut(s)	83, 129, 488, 518, 534
HgaI	GACGC	2 cut(s)	14, 197
HhaI	GCGC	2 cut(s)	233, 577
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	3 cut(s)	265, 331, 458
Hin6I	GCGC	2 cut(s)	231, 575
HinP1I	GCGC	2 cut(s)	231, 575
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	5 cut(s)	110, 344, 619, 659, 721
HpaII	CCGG	5 cut(s)	83, 129, 488, 518, 534
HphI	GGTGA	2 cut(s)	7, 746
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	6 cut(s)	109, 403, 450, 664, 718, 811
Hpy188III	TCNNGA	3 cut(s)	70, 322, 725
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	6 cut(s)	146, 179, 185, 188, 191, 308
HpyAV	CCTTC	3 cut(s)	322, 517, 788
HpyCH4III	ACNGT	4 cut(s)	13, 399, 479, 499
HpyCH4V	TGCA	4 cut(s)	153, 391, 493, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	5 cut(s)	447, 462, 470, 663, 717
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	3 cut(s)	265, 331, 458
HspAI	GCGC	2 cut(s)	231, 575
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	60
Lsp1109I	GCAGC	2 cut(s)	91, 137
LweI	GCATC	1 cut(s)	811
MaeIII	GTNAC	3 cut(s)	13, 275, 697
MboII	GAAGA	4 cut(s)	85, 575, 787, 811
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	2 cut(s)	556, 816
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	2 cut(s)	38, 132
Mph1103I	ATGCAT	1 cut(s)	826
MroNI	GCCGGC	1 cut(s)	128
MseI	TTAA	2 cut(s)	363, 414
MslI	CAYNNNNRTG	1 cut(s)	425
MspA1I	CMGCKG	2 cut(s)	47, 628
MspI	CCGG	5 cut(s)	83, 129, 488, 518, 534
MspR9I	CCNGG	2 cut(s)	534, 535
Mva1269I	GAATGC	1 cut(s)	741
MwoI	GCNNNNNNNGC	1 cut(s)	230
NaeI	GCCGGC	1 cut(s)	130
NciI	CCSGG	2 cut(s)	534, 535
NcoI	CCATGG	1 cut(s)	327
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	3 cut(s)	265, 331, 458
NlaIV	GGNNCC	2 cut(s)	87, 333
NmuCI	GTSAC	2 cut(s)	13, 275
NsiI	ATGCAT	1 cut(s)	826
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	1 cut(s)	741
PdiI	GCCGGC	1 cut(s)	130
PfeI	GAWTC	4 cut(s)	344, 619, 659, 721
PflFI	GACNNNGTC	2 cut(s)	269, 397
PflMI	CCANNNNNTGG	1 cut(s)	328
PkrI	GCNGC	4 cut(s)	81, 127, 152, 212
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PpuMI	RGGWCCY	1 cut(s)	526
Psp5II	RGGWCCY	1 cut(s)	526
PspFI	CCCAGC	2 cut(s)	19, 43
PspN4I	GGNNCC	2 cut(s)	87, 333
PspPI	GGNCC	3 cut(s)	85, 271, 526
PspPPI	RGGWCCY	1 cut(s)	526
PstNI	CAGNNNCTG	2 cut(s)	397, 477
PsyI	GACNNNGTC	2 cut(s)	269, 397
PvuII	CAGCTG	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	425
SalI	GTCGAC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	363, 414
SatI	GCNGC	4 cut(s)	80, 126, 151, 211
Sau96I	GGNCC	3 cut(s)	85, 271, 526
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	534, 535
SduI	GDGCHC	1 cut(s)	468
SetI	ASST	8 cut(s)	49, 152, 261, 273, 420, 471, 515, 531
SfaNI	GCATC	1 cut(s)	811
SgrAI	CRCCGGYG	1 cut(s)	487
SgrDI	CGTCGACG	1 cut(s)	185
SinI	GGWCC	3 cut(s)	85, 271, 526
SmaI	CCCGGG	1 cut(s)	535
SmiMI	CAYNNNNRTG	1 cut(s)	425
Sse9I	AATT	2 cut(s)	556, 816
SsiI	CCGC	8 cut(s)	126, 210, 289, 295, 485, 590, 626, 689
StyD4I	CCNGG	2 cut(s)	532, 533
StyI	CCWWGG	3 cut(s)	162, 327, 829
TaaI	ACNGT	4 cut(s)	13, 399, 479, 499
TaqI	TCGA	3 cut(s)	144, 186, 614
TasI	AATT	2 cut(s)	556, 816
TauI	GCSGC	2 cut(s)	128, 213
TfiI	GAWTC	4 cut(s)	344, 619, 659, 721
Tru1I	TTAA	2 cut(s)	363, 414
Tru9I	TTAA	2 cut(s)	363, 414
TscAI	CASTG	3 cut(s)	233, 402, 466
TseFI	GTSAC	2 cut(s)	13, 275
TseI	GCWGC	2 cut(s)	79, 150
Tsp45I	GTSAC	2 cut(s)	13, 275
TspGWI	ACGGA	2 cut(s)	238, 263
TspMI	CCCGGG	1 cut(s)	533
TspRI	CASTG	3 cut(s)	233, 402, 466
Tth111I	GACNNNGTC	2 cut(s)	269, 397
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	3 cut(s)	85, 271, 526
XapI	RAATTY	1 cut(s)	556
XmaI	CCCGGG	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	186
Zsp2I	ATGCAT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.