Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001896

Physical Location & Seq

Genomic Coordinates Forward (+)

42251330 .. 42254347

Gene Structure 3018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002956

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1932 bp

ATGGACGCCACCGTCACCCCAGCCCCAATCCCCGACCCGAACCCGAACGCCGCCCCAGCTGTCTCCGGTTGGAGCAACATCGTGAAGAAGCAGCCGGACCCAAAGCCCCAAAACTCCTCCGACTCCTCAATCGCCGCGGGCAAAGTATTCGTCGAAAGCTGTAAGTCCTCCAAGGGCATAGCCGTCGCCGTCGTCGACGCCAATGCTATCATTCAAGGCGGCGAGACCCTCGGCCACTGCGCCGACAAGTTCGTCTCCGTCCCAGAGGTCATGGACGAGGTCCGTGACCCTGTTTCCCGCCACCGCCTCGCCGTCGTTCCCTTTCAAGTTCAGACCATGGAACCTTCCCCTGAATCCCTCAATAAAGTTGTTAAGTTTGCGAGGGCTACTGGGGATTTACAGACACTGTCAGATGTGGATGTTAAGCTCATTGCTATGACTTATACATTGGAGGCTCAGATACATGGCACTGAGCACCTCAGGGACTGTCCTCCGCCGGTGCATACTGTCAATGTGAGGAGGTTGCCGGAGAAGGACCTGCCCGGGTGGGGAAATAATGTGCCTAATTTGGAAGAGTGGGAAGCGCTGGAGAACGAAGCGGAGGATAAGTTGAACCCCAGTTCGAGGATTCTTCCGTTGAAAGATATAAACTTGAATGTTATTGAGGATTCTGAGAGCCGTTCTGTTGATGGTTCTGCAGTGGAAGTTAGGAGTGATGTTCGTTCTGCGAATCAGGAGGGTGGTGAGGGCATTCAGGGGAGACATAGGAGATATTTTCCAAAGAAGAAAGAGATAAAGATTGAAGGGAAGATGGTTTCTGATGGCATTGATGCATCCCAAGGACAAGCTGATGATAATGCCGGTGATTGGATGCCTGCCGTCAGTCGGAGTACACATAGAAGGTTTTTGAGAAGAAAAGCTAGACGTGAGTCTTATGAGGCATCGGCTGATAATGATTCTCAGCAAGATGCTGAGGAAAACACCAGTGGTGACGTACTTGTAGATGCTAGGAGCCAGGATCAAACATCGCCTTCTAAATTTGAAGAGGCATGTTGCAGACCTGTGGAGAGTGAGATGACAGAAGAGAAGAATTGTGGTGAAGATCTTTCCTCAAACCTTGAGCAAACAAGGCGTGATGAAGATTCACTAAGGGCTCTTCAAAAAGGGAAGGAGCAGCAGGGGGTTGAGGATAATGATTTCAAAGCAGGGGAAAGCACTTCTGATAACGGTGTGAATTTTGCTGTTGAGGGAGATGAGGTTGAAGTGATAAATGAAGGTCTGGATCACTTGGAGATCTCAAGTCATAATGATGGTAGTGTTGATACATCAAATGTTAACGATGATAGCAGTGAGCAGAGCTGGATGCTGCGATCCTTGTCTGAGTCTAGTGTAGCATGTATCACAAGTGATTTTGCAATGCAAAATGTTATTCTGCGGATGGGTTTACGGTTGTTGGCACCAGGAGGAATGCAGATCCGCCAGTTGCACAGTTGGATTTTGAAATGCCATGCTTGTAACACTGTGACTGCTGAAATTGGGAGAATATTTTGTCCAAAGTGTGGAAATGGTGGTACCTTGCGCAAGGTAGCAGTTACAGTGAGTGAGAATGGGATTATTCTTGCGGCACGTAAGCCTCGGATCACGTTGCGTGGCACAAGATTTTCACTTCCTTTACCTCAAGGTGGAAGAGATGCCATTACTAAGAACCCTGTTTTACGTGAGGATCAGCTCCCACAAAAGTACCTTCATCCAAAGACAAAAAAGAAAGCAAATAAGCCGGGAGATGACGACCTATTTACTTCCAATGACTTCATCTTCCGCCACCATTCTGATAAAAAGGCTCCTTTGCAGCCTCCTGTAAGGAAGGCATTAGCTGCTTTCAGTGGAAGGAGGAATCCCAACGACAATCATTATTCACATTCCAAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

NOB1_Zn_bind PIN_6

Protein Analysis

644

Amino Acids

70.7

Weight (kDa)

5.57

Isoelectric Point (pI)

58.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIN_6	PF17146	64 - 150	1.1e-25	PIN domain of ribonuclease
Zn_ribbon_NOB1	PF08772	492 - 562	3.4e-22	Nin one binding (NOB1) Zn-ribbon like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41190
fragaria_vesca	FvH4_5g23090
malus_domestica	MD14G1101800.v1.1
prunus_persica	Prupe.5G097400_v2.0.a1
pyrus_communis	pycom06g07650 pycom14g09860
rosa_chinensis	RchiOBHm_Chr2g0099081 RchiOBHm_Chr7g0179141 RchiOBHm_Chr7g0211871 RchiOBHm_Chr7g0211921 RchiOBHm_Chr7g0211961
rosa_laevigata	RLG00000002953 RLG00000002956 RLG00000005381 RLG00000016846 RLG00000021575
rosa_multiflora	Rmu_sc0000888.1_g000019 Rmu_sc0009005.1_g000003 Rmu_sc0017524.1_g000001 Rmu_sc0018807.1_g000007 Rmu_sc0022966.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143460 Rroxscaffold_3G00247290 Rroxscaffold_3G00247320 Rroxscaffold_3G00274270 Rroxscaffold_3G00274340
rosa_rugosa	Rorug02G0076500 Rorug06G0421300 Rorug07G0129500 Rorug07G0129600
rosa_samantha	Rh2AG125600 Rh2BG128900 Rh2CG129900 Rh2DG130300 Rh7AG020500 Rh7AG262400 Rh7BG020600 Rh7BG255900 Rh7CG021700 Rh7CG278400 Rh7DG021100 Rh7DG268900 Rh7DG269200
rosa_wichuraiana	Rw7G001720 Rw7G022370 Rw7G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	11, 251
Acc16I	TGCGCA	1 cut(s)	1580
Acc36I	ACCTGC	1 cut(s)	546
Acc65I	GGTACC	1 cut(s)	1571
AccB1I	GGYRCC	2 cut(s)	1456, 1571
AccB7I	CCANNNNNTGG	1 cut(s)	1559
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	137
AclWI	GGATC	6 cut(s)	1026, 1290, 1365, 1468, 1646, 1731
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	2 cut(s)	1037, 1234
AcyI	GRCGYC	2 cut(s)	6, 198
AfaI	GTAC	4 cut(s)	892, 996, 1573, 1742
AfeI	AGCGCT	1 cut(s)	585
AfiI	CCNNNNNNNGG	6 cut(s)	548, 624, 867, 885, 1559, 1682
AjiI	CACGTC	1 cut(s)	926
AjnI	CCWGG	2 cut(s)	1014, 1459
AluBI	AGCT	8 cut(s)	59, 159, 427, 848, 920, 1359, 1729, 1874
AluI	AGCT	8 cut(s)	59, 159, 427, 848, 920, 1359, 1729, 1874
Alw21I	GWGCWC	1 cut(s)	477
Alw26I	GTCTC	4 cut(s)	67, 218, 259, 754
AlwI	GGATC	6 cut(s)	1026, 1290, 1365, 1468, 1646, 1731
AlwNI	CAGNNNCTG	2 cut(s)	406, 486
Ama87I	CYCGRG	1 cut(s)	542
Aor51HI	AGCGCT	1 cut(s)	585
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	5 cut(s)	91, 1174, 1366, 1849, 1874
ApoI	RAATTY	2 cut(s)	1037, 1234
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
Asp718I	GGTACC	1 cut(s)	1571
AspLEI	GCGC	3 cut(s)	242, 586, 1581
AspS9I	GGNCC	3 cut(s)	97, 280, 535
AsuC2I	CCSGG	3 cut(s)	543, 544, 1779
AsuHPI	GGTGA	5 cut(s)	7, 755, 875, 1001, 1109
AvaI	CYCGRG	1 cut(s)	542
AvaII	GGWCC	3 cut(s)	97, 280, 535
AxyI	CCTNAGG	1 cut(s)	479
BaeI	ACNNNNGTAYC	2 cut(s)	1724, 1757
BanI	GGYRCC	2 cut(s)	1456, 1571
BanII	GRGCYC	1 cut(s)	1156
Bbv12I	GWGCWC	1 cut(s)	477
BbvCI	CCTCAGC	1 cut(s)	972
BbvI	GCAGC	5 cut(s)	103, 1186, 1353, 1861, 1861
BccI	CCATC	5 cut(s)	683, 805, 815, 1304, 1432
BceAI	ACGGC	5 cut(s)	167, 173, 296, 663, 863
BcgI	CGANNNNNNTGC	6 cut(s)	130, 164, 166, 185, 200, 219
BciT130I	CCWGG	2 cut(s)	1016, 1461
BcnI	CCSGG	3 cut(s)	543, 544, 1779
BcoDI	GTCTC	4 cut(s)	67, 218, 259, 754
BfaI	CTAG	3 cut(s)	921, 1008, 1386
BfmI	CTRYAG	1 cut(s)	696
BfoI	RGCGCY	1 cut(s)	587
BfuAI	ACCTGC	1 cut(s)	546
BglII	AGATCT	2 cut(s)	1102, 1293
BisI	GCNGC	9 cut(s)	51, 92, 135, 220, 1175, 1367, 1623, 1850, 1875
BlsI	GCNGC	9 cut(s)	52, 93, 136, 221, 1176, 1368, 1624, 1851, 1876
Bme1390I	CCNGG	5 cut(s)	543, 544, 1016, 1461, 1779
Bme18I	GGWCC	3 cut(s)	97, 280, 535
BmeT110I	CYCGRG	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	926
BmgT120I	GGNCC	3 cut(s)	97, 280, 535
BmiI	GGNNCC	6 cut(s)	99, 342, 1013, 1458, 1573, 1842
BmrFI	CCNGG	5 cut(s)	543, 544, 1016, 1461, 1779
BmrI	ACTGGG	2 cut(s)	399, 612
BmsI	GCATC	8 cut(s)	820, 842, 861, 950, 958, 994, 1353, 1681
BmuI	ACTGGG	2 cut(s)	399, 612
BoxI	GACNNNNGTC	1 cut(s)	928
BpmI	CTGGAG	1 cut(s)	608
Bpu10I	CCTNAGC	1 cut(s)	972
BpuEI	CTTGAG	3 cut(s)	1139, 1282, 1662
BpuMI	CCSGG	3 cut(s)	543, 544, 1779
BsaAI	YACGTR	2 cut(s)	1628, 1718
BsaHI	GRCGYC	2 cut(s)	6, 198
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	7 cut(s)	135, 171, 229, 336, 542, 838, 1634
BsaWI	WCCGGW	1 cut(s)	65
BsaXI	ACNNNNNCTCC	4 cut(s)	593, 623, 1242, 1272
Bsc4I	CCNNNNNNNGG	6 cut(s)	548, 624, 867, 885, 1559, 1682
Bse118I	RCCGGY	2 cut(s)	496, 860
Bse1I	ACTGG	4 cut(s)	394, 618, 984, 1480
Bse21I	CCTNAGG	1 cut(s)	479
Bse3DI	GCAATG	2 cut(s)	429, 1422
BseBI	CCWGG	2 cut(s)	1016, 1461
BseDI	CCNNGG	7 cut(s)	135, 171, 229, 336, 542, 838, 1634
BseGI	GGATG	6 cut(s)	424, 833, 876, 1368, 1443, 1747
BseLI	CCNNNNNNNGG	6 cut(s)	548, 624, 867, 885, 1559, 1682
BseMI	GCAATG	2 cut(s)	429, 1422
BseMII	CTCAG	7 cut(s)	462, 470, 493, 663, 963, 974, 1371
BseNI	ACTGG	4 cut(s)	394, 618, 984, 1480
BseRI	GAGGAG	3 cut(s)	106, 115, 532
BseXI	GCAGC	5 cut(s)	103, 1186, 1353, 1861, 1861
BseYI	CCCAGC	2 cut(s)	19, 55
Bsh1236I	CGCG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	234
BshNI	GGYRCC	2 cut(s)	1456, 1571
BsiHKAI	GWGCWC	1 cut(s)	477
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	7 cut(s)	66, 95, 497, 527, 543, 861, 1778
BslFI	GGGAC	2 cut(s)	245, 497
BslI	CCNNNNNNNGG	6 cut(s)	548, 624, 867, 885, 1559, 1682
BsmAI	GTCTC	4 cut(s)	67, 218, 259, 754
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	2 cut(s)	245, 497
BsmI	GAATGC	2 cut(s)	750, 1473
BsnI	GGCC	1 cut(s)	234
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	542
Bsp1286I	GDGCHC	2 cut(s)	477, 1156
Bsp143I	GATC	8 cut(s)	1018, 1102, 1282, 1293, 1370, 1473, 1638, 1723
Bsp19I	CCATGG	1 cut(s)	336
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	7 cut(s)	463, 469, 492, 664, 964, 973, 1372
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	6 cut(s)	99, 342, 1013, 1458, 1573, 1842
BspMAI	CTGCAG	1 cut(s)	700
BspMI	ACCTGC	1 cut(s)	546
BspPI	GGATC	6 cut(s)	1026, 1290, 1365, 1468, 1646, 1731
BspQI	GCTCTTC	1 cut(s)	1161
BspT107I	GGYRCC	2 cut(s)	1456, 1571
BspTNI	GGTCTC	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	429, 1422
BsrFI	RCCGGY	2 cut(s)	496, 860
BsrI	ACTGG	4 cut(s)	394, 618, 984, 1480
BssAI	RCCGGY	2 cut(s)	496, 860
BssECI	CCNNGG	7 cut(s)	135, 171, 229, 336, 542, 838, 1634
BssMI	GATC	8 cut(s)	1018, 1102, 1282, 1293, 1370, 1473, 1638, 1723
BssNI	GRCGYC	2 cut(s)	6, 198
BssT1I	CCWWGG	3 cut(s)	171, 336, 838
Bst2UI	CCWGG	2 cut(s)	1016, 1461
Bst4CI	ACNGT	9 cut(s)	13, 408, 488, 508, 1229, 1449, 1490, 1522, 1597
Bst6I	CTCTTC	5 cut(s)	567, 1038, 1077, 1161, 1681
BstACI	GRCGYC	2 cut(s)	6, 198
BstAPI	GCANNNNNTGC	1 cut(s)	1874
BstBAI	YACGTR	2 cut(s)	1628, 1718
BstC8I	GCNNGC	2 cut(s)	139, 876
BstDEI	CTNAG	9 cut(s)	456, 471, 479, 672, 960, 972, 1148, 1380, 1701
BstDSI	CCRYGG	2 cut(s)	135, 336
BstF5I	GGATG	6 cut(s)	424, 833, 876, 1368, 1443, 1747
BstFNI	CGCG	1 cut(s)	137
BstH2I	RGCGCY	1 cut(s)	587
BstHHI	GCGC	3 cut(s)	242, 586, 1581
BstKTI	GATC	8 cut(s)	1021, 1105, 1285, 1296, 1373, 1476, 1641, 1726
BstMAI	GTCTC	4 cut(s)	67, 218, 259, 754
BstMBI	GATC	8 cut(s)	1018, 1102, 1282, 1293, 1370, 1473, 1638, 1723
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 1129, 1874
BstNI	CCWGG	2 cut(s)	1016, 1461
BstNSI	RCATGY	2 cut(s)	1053, 1398
BstPAI	GACNNNNGTC	1 cut(s)	928
BstSCI	CCNGG	5 cut(s)	541, 542, 1014, 1459, 1777
BstSFI	CTRYAG	1 cut(s)	696
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	5 cut(s)	103, 1186, 1353, 1861, 1861
BstX2I	RGATCY	3 cut(s)	1102, 1293, 1473
BstYI	RGATCY	3 cut(s)	1102, 1293, 1473
Bsu36I	CCTNAGG	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	234
BtgI	CCRYGG	2 cut(s)	135, 336
BtgZI	GCGATG	1 cut(s)	1011
BtrI	CACGTC	1 cut(s)	926
BtsCI	GGATG	6 cut(s)	424, 833, 876, 1368, 1443, 1747
BtsI	GCAGTG	3 cut(s)	235, 705, 1354
BtsIMutI	CAGTG	9 cut(s)	235, 404, 468, 705, 991, 1354, 1518, 1602, 1888
BveI	ACCTGC	1 cut(s)	546
Cac8I	GCNNGC	2 cut(s)	139, 876
CaiI	CAGNNNCTG	2 cut(s)	406, 486
CfoI	GCGC	3 cut(s)	242, 586, 1581
Cfr10I	RCCGGY	2 cut(s)	496, 860
Cfr13I	GGNCC	3 cut(s)	97, 280, 535
Cfr42I	CCGCGG	1 cut(s)	138
Cfr9I	CCCGGG	1 cut(s)	542
CseI	GACGC	2 cut(s)	14, 206
Csp6I	GTAC	4 cut(s)	891, 995, 1572, 1741
CviAII	CATG	6 cut(s)	271, 337, 464, 1050, 1395, 1508
CviQI	GTAC	4 cut(s)	891, 995, 1572, 1741
DdeI	CTNAG	9 cut(s)	456, 471, 479, 672, 960, 972, 1148, 1380, 1701
DpnI	GATC	8 cut(s)	1020, 1104, 1284, 1295, 1372, 1475, 1640, 1725
DpnII	GATC	8 cut(s)	1018, 1102, 1282, 1293, 1370, 1473, 1638, 1723
DrdI	GACNNNNNNGTC	2 cut(s)	11, 251
DseDI	GACNNNNNNGTC	2 cut(s)	11, 251
EaeI	YGGCCR	1 cut(s)	232
Eam1104I	CTCTTC	5 cut(s)	567, 1038, 1077, 1161, 1681
EarI	CTCTTC	5 cut(s)	567, 1038, 1077, 1161, 1681
EciI	GGCGGA	3 cut(s)	483, 1466, 1808
Eco130I	CCWWGG	3 cut(s)	171, 336, 838
Eco24I	GRGCYC	1 cut(s)	1156
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	3 cut(s)	97, 280, 535
Eco47III	AGCGCT	1 cut(s)	585
Eco81I	CCTNAGG	1 cut(s)	479
Eco88I	CYCGRG	1 cut(s)	542
EcoO109I	RGGNCCY	1 cut(s)	535
EcoRII	CCWGG	2 cut(s)	1014, 1459
EcoT14I	CCWWGG	3 cut(s)	171, 336, 838
EcoT22I	ATGCAT	1 cut(s)	835
EcoT38I	GRGCYC	1 cut(s)	1156
ErhI	CCWWGG	3 cut(s)	171, 336, 838
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	6 cut(s)	274, 340, 467, 1053, 1398, 1511
FaqI	GGGAC	2 cut(s)	245, 497
FatI	CATG	6 cut(s)	270, 336, 463, 1049, 1394, 1507
FauI	CCCGC	2 cut(s)	130, 305
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	9 cut(s)	51, 92, 135, 220, 1175, 1367, 1623, 1850, 1875
FokI	GGATG	6 cut(s)	431, 820, 883, 1375, 1450, 1734
FriOI	GRGCYC	1 cut(s)	1156
Fsp4HI	GCNGC	9 cut(s)	51, 92, 135, 220, 1175, 1367, 1623, 1850, 1875
FspBI	CTAG	3 cut(s)	921, 1008, 1386
FspI	TGCGCA	1 cut(s)	1580
GlaI	GCGC	3 cut(s)	241, 585, 1580
GluI	GCNGC	9 cut(s)	51, 92, 135, 220, 1175, 1367, 1623, 1850, 1875
GsaI	CCCAGC	2 cut(s)	23, 59
GsuI	CTGGAG	1 cut(s)	608
HaeII	RGCGCY	1 cut(s)	587
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	7 cut(s)	66, 95, 497, 527, 543, 861, 1778
HgaI	GACGC	2 cut(s)	14, 206
HhaI	GCGC	3 cut(s)	242, 586, 1581
Hin1I	GRCGYC	2 cut(s)	6, 198
Hin1II	CATG	6 cut(s)	274, 340, 467, 1053, 1398, 1511
Hin6I	GCGC	3 cut(s)	240, 584, 1579
HinP1I	GCGC	3 cut(s)	240, 584, 1579
HincII	GTYRAC	2 cut(s)	196, 1336
HindII	GTYRAC	2 cut(s)	196, 1336
HpaI	GTTAAC	1 cut(s)	1336
HpaII	CCGG	7 cut(s)	66, 95, 497, 527, 543, 861, 1778
HphI	GGTGA	5 cut(s)	7, 755, 875, 1001, 1109
Hpy166II	GTNNAC	4 cut(s)	196, 893, 1336, 1445
Hpy188III	TCNNGA	3 cut(s)	82, 734, 1280
Hpy8I	GTNNAC	4 cut(s)	196, 893, 1336, 1445
Hpy99I	CGWCG	6 cut(s)	155, 188, 194, 197, 200, 317
HpyCH4III	ACNGT	9 cut(s)	13, 408, 488, 508, 1229, 1449, 1490, 1522, 1597
HpyCH4IV	ACGT	5 cut(s)	925, 993, 1627, 1643, 1717
HpyCH4V	TGCA	9 cut(s)	502, 698, 833, 1056, 1415, 1420, 1471, 1486, 1849
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 1129, 1874
HpyF3I	CTNAG	9 cut(s)	456, 471, 479, 672, 960, 972, 1148, 1380, 1701
HpySE526I	ACGT	5 cut(s)	925, 993, 1627, 1643, 1717
Hsp92I	GRCGYC	2 cut(s)	6, 198
Hsp92II	CATG	6 cut(s)	274, 340, 467, 1053, 1398, 1511
HspAI	GCGC	3 cut(s)	240, 584, 1579
KpnI	GGTACC	1 cut(s)	1575
KspAI	GTTAAC	1 cut(s)	1336
KspI	CCGCGG	1 cut(s)	138
Kzo9I	GATC	8 cut(s)	1018, 1102, 1282, 1293, 1370, 1473, 1638, 1723
LguI	GCTCTTC	1 cut(s)	1161
LmnI	GCTCC	5 cut(s)	72, 1011, 1171, 1734, 1846
Lsp1109I	GCAGC	5 cut(s)	103, 1186, 1353, 1861, 1861
LweI	GCATC	8 cut(s)	820, 842, 861, 950, 958, 994, 1353, 1681
MaeI	CTAG	3 cut(s)	921, 1008, 1386
MaeII	ACGT	5 cut(s)	925, 993, 1627, 1643, 1717
MaeIII	GTNAC	6 cut(s)	13, 284, 989, 1514, 1522, 1591
MalI	GATC	8 cut(s)	1020, 1104, 1284, 1295, 1372, 1475, 1640, 1725
MboI	GATC	8 cut(s)	1018, 1102, 1282, 1293, 1370, 1473, 1638, 1723
MflI	RGATCY	3 cut(s)	1102, 1293, 1473
MhlI	GDGCHC	2 cut(s)	477, 1156
MluCI	AATT	5 cut(s)	565, 1037, 1090, 1234, 1533
MlyI	GAGTC	3 cut(s)	116, 938, 1391
MmeI	TCCRAC	4 cut(s)	50, 144, 866, 1472
Mph1103I	ATGCAT	1 cut(s)	835
MseI	TTAA	4 cut(s)	372, 423, 1335, 1930
MslI	CAYNNNNRTG	2 cut(s)	434, 1308
MspA1I	CMGCKG	2 cut(s)	59, 137
MspI	CCGG	7 cut(s)	66, 95, 497, 527, 543, 861, 1778
MspR9I	CCNGG	5 cut(s)	543, 544, 1016, 1461, 1779
Mva1269I	GAATGC	2 cut(s)	750, 1473
MvaI	CCWGG	2 cut(s)	1016, 1461
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	3 cut(s)	56, 1129, 1874
NciI	CCSGG	3 cut(s)	543, 544, 1779
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	8 cut(s)	1018, 1102, 1282, 1293, 1370, 1473, 1638, 1723
NlaIII	CATG	6 cut(s)	274, 340, 467, 1053, 1398, 1511
NlaIV	GGNNCC	6 cut(s)	99, 342, 1013, 1458, 1573, 1842
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	4 cut(s)	13, 284, 989, 1522
NsbI	TGCGCA	1 cut(s)	1580
NsiI	ATGCAT	1 cut(s)	835
NspI	RCATGY	2 cut(s)	1053, 1398
PciSI	GCTCTTC	1 cut(s)	1161
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PctI	GAATGC	2 cut(s)	750, 1473
PfeI	GAWTC	7 cut(s)	353, 628, 668, 730, 956, 1142, 1894
PflFI	GACNNNGTC	2 cut(s)	278, 406
PflMI	CCANNNNNTGG	1 cut(s)	1559
PkrI	GCNGC	9 cut(s)	52, 93, 136, 221, 1176, 1368, 1624, 1851, 1876
PleI	GAGTC	3 cut(s)	116, 937, 1390
PpsI	GAGTC	3 cut(s)	116, 937, 1390
Ppu21I	YACGTR	2 cut(s)	1628, 1718
PpuMI	RGGWCCY	1 cut(s)	535
PshAI	GACNNNNGTC	1 cut(s)	928
Psp5II	RGGWCCY	1 cut(s)	535
Psp6I	CCWGG	2 cut(s)	1014, 1459
PspFI	CCCAGC	2 cut(s)	19, 55
PspGI	CCWGG	2 cut(s)	1014, 1459
PspN4I	GGNNCC	6 cut(s)	99, 342, 1013, 1458, 1573, 1842
PspPI	GGNCC	3 cut(s)	97, 280, 535
PspPPI	RGGWCCY	1 cut(s)	535
PstI	CTGCAG	1 cut(s)	700
PstNI	CAGNNNCTG	2 cut(s)	406, 486
PsuI	RGATCY	3 cut(s)	1102, 1293, 1473
PsyI	GACNNNGTC	2 cut(s)	278, 406
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	4 cut(s)	892, 996, 1573, 1742
RsaNI	GTAC	4 cut(s)	891, 995, 1572, 1741
RseI	CAYNNNNRTG	2 cut(s)	434, 1308
SacII	CCGCGG	1 cut(s)	138
SalI	GTCGAC	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	1161
SaqAI	TTAA	4 cut(s)	372, 423, 1335, 1930
SatI	GCNGC	9 cut(s)	51, 92, 135, 220, 1175, 1367, 1623, 1850, 1875
Sau3AI	GATC	8 cut(s)	1018, 1102, 1282, 1293, 1370, 1473, 1638, 1723
Sau96I	GGNCC	3 cut(s)	97, 280, 535
SchI	GAGTC	3 cut(s)	116, 938, 1391
ScrFI	CCNGG	5 cut(s)	543, 544, 1016, 1461, 1779
SduI	GDGCHC	2 cut(s)	477, 1156
SfaNI	GCATC	8 cut(s)	820, 842, 861, 950, 958, 994, 1353, 1681
SfcI	CTRYAG	1 cut(s)	696
Sfr303I	CCGCGG	1 cut(s)	138
SgrAI	CRCCGGYG	1 cut(s)	496
SgrBI	CCGCGG	1 cut(s)	138
SgrDI	CGTCGACG	1 cut(s)	194
SinI	GGWCC	3 cut(s)	97, 280, 535
SmaI	CCCGGG	1 cut(s)	544
SmiMI	CAYNNNNRTG	2 cut(s)	434, 1308
SmlI	CTYRAG	3 cut(s)	1118, 1297, 1677
SmoI	CTYRAG	3 cut(s)	1118, 1297, 1677
Sse9I	AATT	5 cut(s)	565, 1037, 1090, 1234, 1533
SspI	AATATT	1 cut(s)	1545
SspMI	CTAG	3 cut(s)	921, 1008, 1386
StyD4I	CCNGG	5 cut(s)	541, 542, 1014, 1459, 1777
StyI	CCWWGG	3 cut(s)	171, 336, 838
TaaI	ACNGT	9 cut(s)	13, 408, 488, 508, 1229, 1449, 1490, 1522, 1597
TaiI	ACGT	5 cut(s)	928, 996, 1630, 1646, 1720
TaqI	TCGA	3 cut(s)	153, 195, 623
TasI	AATT	5 cut(s)	565, 1037, 1090, 1234, 1533
TatI	WGTACW	1 cut(s)	890
TauI	GCSGC	4 cut(s)	53, 137, 222, 1625
TfiI	GAWTC	7 cut(s)	353, 628, 668, 730, 956, 1142, 1894
Tru1I	TTAA	4 cut(s)	372, 423, 1335, 1930
Tru9I	TTAA	4 cut(s)	372, 423, 1335, 1930
TscAI	CASTG	9 cut(s)	242, 411, 475, 705, 991, 1354, 1525, 1602, 1888
TseFI	GTSAC	4 cut(s)	13, 284, 989, 1522
TseI	GCWGC	5 cut(s)	91, 1174, 1366, 1849, 1874
Tsp45I	GTSAC	4 cut(s)	13, 284, 989, 1522
TspDTI	ATGAA	4 cut(s)	1152, 1287, 1736, 1801
TspGWI	ACGGA	3 cut(s)	247, 272, 624
TspMI	CCCGGG	1 cut(s)	542
TspRI	CASTG	9 cut(s)	242, 411, 475, 705, 991, 1354, 1525, 1602, 1888
Tth111I	GACNNNGTC	2 cut(s)	278, 406
Van91I	CCANNNNNTGG	1 cut(s)	1559
VpaK11BI	GGWCC	3 cut(s)	97, 280, 535
XapI	RAATTY	2 cut(s)	1037, 1234
XceI	RCATGY	2 cut(s)	1053, 1398
XmaI	CCCGGG	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	3 cut(s)	921, 1008, 1386
Zsp2I	ATGCAT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.