Rh7AG262400

RNA-binding protein NOB1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001896
Physical Location & Seq
Reverse (-)
26868886 .. 26872258
3373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG262400.1

Sequence Viewer

Length: 1497 bp
ATGACTTATACATTGGAGGCTCAGATACATGGCACTGAGCACCTCAGGGACTGTCCTCCGCCGGTGCATACTGTCAATGTGAGGAGGTTGCCGGAGAAGGACTTGCCCGGGTGGGGAAATAATGTGCCTAATTTGGAAGAGTGGGAAGCGCTGGAGAACGAAGCGGAGGATAAGTTGAACCCCAGTTCGAGGATTCTTCCGCTGAAAGATATAAACTTGAATGTTATTGAGGATTCTGAGAGTCGTTCTGTTGATGGTTCTGCGGTGGAAGTTACGAGTGATGTTCGTTCTGAGAATCAGGAGGGTGGTGAGGGCATTCAGGGGAGACATAGGAGATATTTTCCAAAGAAGAAAGAGATAAAGATTGAAGGAAAGATGGTTTCGGATGGAATTGATGCATCCCAAGGACAAGCTGATGATAATGCGGGTGATTGGATGCCTGCCGTCAGTCGGAGTACACATAGAAGGTTTTTGAGAAGAAAAGCAAGACGTGAGTCTTATGAGGCATCGGCTGATAATGATTCTCAGCAAGATGCTGAGGAAAACACCAGTGGTGACGTACTTGTAGATGCTAGGAGCCAGGATCAAACATCGCCTTCTAAATTTGAAGAGGCATGTTGCAGACCTGTGGAGAGTGAGATGACAGAAGAGAAGAATTGTGATGAAGATCTTTCCTCAATCCTTGAGCAAACAAGGCGTGATGAAGATTCACTAAGGGCTCTTCAAAAAGGGAAGGAGCAGCATGGGGTTGAGGATAATGATTTCAAAGCAGGGGAAAGCACTTCTGATAACAGTGTGAATTTTGCTGTTGAGGGAGATGAGGTTGAAGTGATAAATGAAGGTCTGGATCACTTGGAGATCTCAAGTCATAATGATGGTAGTGTTGATACATCAAATGTTAACGATGATAGCAGTGAGCAGAGCTGGATGCTGCGATCCTTATCTGAGTCTAGTGTAGCATGTATAACAAGTGATTTTGCAATGCAAAATGTTATTCTGCAGATGGGTTTACGGTTGTTGGCACCAGGAGGAATGCAGATCCGCCAGCTGCACAGGTGGATTTTGAAATGCCATGCTTGTAACACTGTGACTGCTGAAATTGGGAGAATATTTTGTCCAAAGTGTGGAAATGGTGGTACCTTGCGCAAGGTAGCAGTTACAGTGGGTGAGAATGGGATTATTCTTGCGGCACATAAGCCTCGGATCACGTTGCGTGGCACAAGATTTTCACTTCCTTTACCTCAAGGTGGAAGAAATGCCATTACTAAGAACCCTGTTTTACGTGAGGATCAGCTCCCACAAAAGTACCTTCATCCAAAGACAAAAAAGAAAGCAAATAAGCCGGGAGATGACGACCTATTCACTTCCAATGACTTCATCTTCCGCCACCATTCTGATAAAAAGGCTCCTTTGCAGCCTCCTGTAAGGAAGGCATTGGCTGCTTTCAGTGGAAGGAGGAATCCCAACGACAATCATTATTCACATTCCAAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOB1_Zn_bind PIN_6

Protein Analysis

498

Amino Acids

55.57

Weight (kDa)

5.53

Isoelectric Point (pI)

64.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_NOB1 PF08772 347 - 417 5.9e-22 Nin one binding (NOB1) Zn-ribbon like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1145
Acc65I GGTACC 1 cut(s) 1136
AccB1I GGYRCC 2 cut(s) 1021, 1136
AccB7I CCANNNNNTGG 1 cut(s) 1124
AciI CCGC 8 cut(s) 59, 164, 200, 263, 425, 1042, 1187, 1384
AclWI GGATC 6 cut(s) 591, 855, 930, 1033, 1211, 1296
AcsI RAATTY 2 cut(s) 602, 799
AfaI GTAC 4 cut(s) 457, 561, 1138, 1307
AfeI AGCGCT 1 cut(s) 150
AfiI CCNNNNNNNGG 5 cut(s) 113, 189, 450, 1124, 1247
AgsI TTSAA 8 cut(s) 178, 220, 368, 608, 725, 766, 827, 1066
AjiI CACGTC 1 cut(s) 491
AjnI CCWGG 2 cut(s) 579, 1024
AluBI AGCT 4 cut(s) 413, 924, 1048, 1294
AluI AGCT 4 cut(s) 413, 924, 1048, 1294
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 6 cut(s) 591, 855, 930, 1033, 1211, 1296
AlwNI CAGNNNCTG 1 cut(s) 51
Ama87I CYCGRG 1 cut(s) 107
Aor51HI AGCGCT 1 cut(s) 150
ApeKI GCWGC 5 cut(s) 739, 931, 1048, 1414, 1439
ApoI RAATTY 2 cut(s) 602, 799
Asp718I GGTACC 1 cut(s) 1136
AspLEI GCGC 2 cut(s) 151, 1146
AsuC2I CCSGG 3 cut(s) 108, 109, 1344
AsuHPI GGTGA 4 cut(s) 320, 440, 566, 1178
AvaI CYCGRG 1 cut(s) 107
AxyI CCTNAGG 1 cut(s) 44
BaeI ACNNNNGTAYC 2 cut(s) 1289, 1322
BanI GGYRCC 2 cut(s) 1021, 1136
BanII GRGCYC 1 cut(s) 721
Bbv12I GWGCWC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 537
BbvI GCAGC 5 cut(s) 751, 918, 1035, 1426, 1426
BccI CCATC 5 cut(s) 248, 370, 380, 869, 997
BceAI ACGGC 1 cut(s) 428
BciT130I CCWGG 2 cut(s) 581, 1026
BcnI CCSGG 3 cut(s) 108, 109, 1344
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 2 cut(s) 573, 951
BfmI CTRYAG 1 cut(s) 998
BfoI RGCGCY 1 cut(s) 152
BglII AGATCT 2 cut(s) 667, 858
BisI GCNGC 6 cut(s) 740, 932, 1049, 1188, 1415, 1440
BlsI GCNGC 6 cut(s) 741, 933, 1050, 1189, 1416, 1441
Bme1390I CCNGG 5 cut(s) 108, 109, 581, 1026, 1344
BmeT110I CYCGRG 1 cut(s) 107
BmgBI CACGTC 1 cut(s) 491
BmiI GGNNCC 4 cut(s) 578, 1023, 1138, 1407
BmrFI CCNGG 5 cut(s) 108, 109, 581, 1026, 1344
BmrI ACTGGG 1 cut(s) 177
BmsI GCATC 7 cut(s) 385, 407, 426, 515, 523, 559, 918
BmuI ACTGGG 1 cut(s) 177
BoxI GACNNNNGTC 1 cut(s) 493
BpmI CTGGAG 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 537
BpuEI CTTGAG 3 cut(s) 704, 847, 1227
BpuMI CCSGG 3 cut(s) 108, 109, 1344
BsaAI YACGTR 1 cut(s) 1283
BsaBI GATNNNNATC 2 cut(s) 666, 940
BsaJI CCNNGG 3 cut(s) 107, 403, 1199
BsaXI ACNNNNNCTCC 4 cut(s) 158, 188, 807, 837
Bsc4I CCNNNNNNNGG 5 cut(s) 113, 189, 450, 1124, 1247
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 183, 549
Bse21I CCTNAGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 987
Bse8I GATNNNNATC 2 cut(s) 666, 940
BseBI CCWGG 2 cut(s) 581, 1026
BseDI CCNNGG 3 cut(s) 107, 403, 1199
BseGI GGATG 5 cut(s) 391, 398, 441, 933, 1312
BseJI GATNNNNATC 2 cut(s) 666, 940
BseLI CCNNNNNNNGG 5 cut(s) 113, 189, 450, 1124, 1247
BseMI GCAATG 1 cut(s) 987
BseMII CTCAG 8 cut(s) 27, 35, 58, 228, 282, 528, 539, 936
BseNI ACTGG 2 cut(s) 183, 549
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 5 cut(s) 751, 918, 1035, 1426, 1426
BsgI GTGCAG 1 cut(s) 1034
BshNI GGYRCC 2 cut(s) 1021, 1136
BsiHKAI GWGCWC 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 4 cut(s) 62, 92, 108, 1343
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 5 cut(s) 113, 189, 450, 1124, 1247
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 62
BsmI GAATGC 2 cut(s) 315, 1038
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 42, 721
Bsp143I GATC 8 cut(s) 583, 667, 847, 858, 935, 1038, 1203, 1288
BspACI CCGC 8 cut(s) 59, 164, 200, 263, 425, 1042, 1187, 1384
BspCNI CTCAG 8 cut(s) 28, 34, 57, 229, 283, 529, 538, 937
BspLI GGNNCC 4 cut(s) 578, 1023, 1138, 1407
BspMAI CTGCAG 1 cut(s) 1002
BspPI GGATC 6 cut(s) 591, 855, 930, 1033, 1211, 1296
BspQI GCTCTTC 1 cut(s) 726
BspT107I GGYRCC 2 cut(s) 1021, 1136
BsrDI GCAATG 1 cut(s) 987
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 2 cut(s) 183, 549
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 3 cut(s) 107, 403, 1199
BssMI GATC 8 cut(s) 583, 667, 847, 858, 935, 1038, 1203, 1288
BssT1I CCWWGG 1 cut(s) 403
Bst2UI CCWGG 2 cut(s) 581, 1026
Bst4CI ACNGT 6 cut(s) 53, 73, 794, 1014, 1087, 1162
Bst6I CTCTTC 4 cut(s) 132, 603, 642, 726
BstAPI GCANNNNNTGC 1 cut(s) 1439
BstBAI YACGTR 1 cut(s) 1283
BstC8I GCNNGC 2 cut(s) 441, 1046
BstF5I GGATG 5 cut(s) 391, 398, 441, 933, 1312
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 2 cut(s) 151, 1146
BstKTI GATC 8 cut(s) 586, 670, 850, 861, 938, 1041, 1206, 1291
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 8 cut(s) 583, 667, 847, 858, 935, 1038, 1203, 1288
BstMWI GCNNNNNNNGC 2 cut(s) 694, 1439
BstNI CCWGG 2 cut(s) 581, 1026
BstNSI RCATGY 2 cut(s) 618, 963
BstPAI GACNNNNGTC 1 cut(s) 493
BstSCI CCNGG 5 cut(s) 106, 107, 579, 1024, 1342
BstSFI CTRYAG 1 cut(s) 998
BstV1I GCAGC 5 cut(s) 751, 918, 1035, 1426, 1426
BstX2I RGATCY 3 cut(s) 667, 858, 1038
BstYI RGATCY 3 cut(s) 667, 858, 1038
Bsu36I CCTNAGG 1 cut(s) 44
BtgZI GCGATG 1 cut(s) 576
BtrI CACGTC 1 cut(s) 491
BtsCI GGATG 5 cut(s) 391, 398, 441, 933, 1312
BtsI GCAGTG 1 cut(s) 919
BtsIMutI CAGTG 7 cut(s) 33, 556, 799, 919, 1083, 1167, 1453
Cac8I GCNNGC 2 cut(s) 441, 1046
CaiI CAGNNNCTG 1 cut(s) 51
CfoI GCGC 2 cut(s) 151, 1146
Cfr10I RCCGGY 1 cut(s) 61
Cfr9I CCCGGG 1 cut(s) 107
Csp6I GTAC 4 cut(s) 456, 560, 1137, 1306
CviAII CATG 5 cut(s) 29, 615, 743, 960, 1073
CviQI GTAC 4 cut(s) 456, 560, 1137, 1306
DpnI GATC 8 cut(s) 585, 669, 849, 860, 937, 1040, 1205, 1290
DpnII GATC 8 cut(s) 583, 667, 847, 858, 935, 1038, 1203, 1288
Eam1104I CTCTTC 4 cut(s) 132, 603, 642, 726
EarI CTCTTC 4 cut(s) 132, 603, 642, 726
EciI GGCGGA 3 cut(s) 48, 1031, 1373
Eco130I CCWWGG 1 cut(s) 403
Eco24I GRGCYC 1 cut(s) 721
Eco47III AGCGCT 1 cut(s) 150
Eco81I CCTNAGG 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 579, 1024
EcoT14I CCWWGG 1 cut(s) 403
EcoT22I ATGCAT 1 cut(s) 400
EcoT38I GRGCYC 1 cut(s) 721
ErhI CCWWGG 1 cut(s) 403
FaeI CATG 5 cut(s) 32, 618, 746, 963, 1076
FaqI GGGAC 1 cut(s) 62
FatI CATG 5 cut(s) 28, 614, 742, 959, 1072
FauI CCCGC 1 cut(s) 418
Fnu4HI GCNGC 6 cut(s) 740, 932, 1049, 1188, 1415, 1440
FokI GGATG 5 cut(s) 385, 398, 448, 940, 1299
FriOI GRGCYC 1 cut(s) 721
Fsp4HI GCNGC 6 cut(s) 740, 932, 1049, 1188, 1415, 1440
FspBI CTAG 2 cut(s) 573, 951
FspI TGCGCA 1 cut(s) 1145
GlaI GCGC 2 cut(s) 150, 1145
GluI GCNGC 6 cut(s) 740, 932, 1049, 1188, 1415, 1440
GsuI CTGGAG 1 cut(s) 173
HaeII RGCGCY 1 cut(s) 152
HapII CCGG 4 cut(s) 62, 92, 108, 1343
HhaI GCGC 2 cut(s) 151, 1146
Hin1II CATG 5 cut(s) 32, 618, 746, 963, 1076
Hin6I GCGC 2 cut(s) 149, 1144
HinP1I GCGC 2 cut(s) 149, 1144
HincII GTYRAC 1 cut(s) 901
HindII GTYRAC 1 cut(s) 901
HinfI GANTC 9 cut(s) 193, 233, 241, 295, 494, 521, 707, 947, 1459
HpaI GTTAAC 1 cut(s) 901
HpaII CCGG 4 cut(s) 62, 92, 108, 1343
HphI GGTGA 4 cut(s) 320, 440, 566, 1178
Hpy166II GTNNAC 3 cut(s) 458, 901, 1010
Hpy188I TCNGA 9 cut(s) 24, 238, 292, 385, 453, 787, 946, 1203, 1396
Hpy188III TCNNGA 2 cut(s) 299, 845
Hpy8I GTNNAC 3 cut(s) 458, 901, 1010
HpyAV CCTTC 9 cut(s) 91, 362, 459, 606, 727, 833, 1319, 1423, 1446
HpyCH4III ACNGT 6 cut(s) 53, 73, 794, 1014, 1087, 1162
HpyCH4IV ACGT 4 cut(s) 490, 558, 1208, 1282
HpyCH4V TGCA 9 cut(s) 67, 398, 621, 980, 985, 1000, 1036, 1051, 1414
HpyF10VI GCNNNNNNNGC 2 cut(s) 694, 1439
HpySE526I ACGT 4 cut(s) 490, 558, 1208, 1282
Hsp92II CATG 5 cut(s) 32, 618, 746, 963, 1076
HspAI GCGC 2 cut(s) 149, 1144
KpnI GGTACC 1 cut(s) 1140
KspAI GTTAAC 1 cut(s) 901
Kzo9I GATC 8 cut(s) 583, 667, 847, 858, 935, 1038, 1203, 1288
LguI GCTCTTC 1 cut(s) 726
LmnI GCTCC 4 cut(s) 576, 736, 1299, 1411
Lsp1109I GCAGC 5 cut(s) 751, 918, 1035, 1426, 1426
LweI GCATC 7 cut(s) 385, 407, 426, 515, 523, 559, 918
MaeI CTAG 2 cut(s) 573, 951
MaeII ACGT 4 cut(s) 490, 558, 1208, 1282
MaeIII GTNAC 5 cut(s) 271, 554, 1079, 1087, 1156
MalI GATC 8 cut(s) 585, 669, 849, 860, 937, 1040, 1205, 1290
MboI GATC 8 cut(s) 583, 667, 847, 858, 935, 1038, 1203, 1288
MflI RGATCY 3 cut(s) 667, 858, 1038
MhlI GDGCHC 2 cut(s) 42, 721
MluCI AATT 6 cut(s) 130, 390, 602, 655, 799, 1098
MlyI GAGTC 3 cut(s) 250, 503, 956
MmeI TCCRAC 1 cut(s) 431
Mph1103I ATGCAT 1 cut(s) 400
MseI TTAA 2 cut(s) 900, 1495
MslI CAYNNNNRTG 1 cut(s) 873
MspA1I CMGCKG 2 cut(s) 202, 1048
MspI CCGG 4 cut(s) 62, 92, 108, 1343
MspR9I CCNGG 5 cut(s) 108, 109, 581, 1026, 1344
Mva1269I GAATGC 2 cut(s) 315, 1038
MvaI CCWGG 2 cut(s) 581, 1026
MwoI GCNNNNNNNGC 2 cut(s) 694, 1439
NciI CCSGG 3 cut(s) 108, 109, 1344
NdeII GATC 8 cut(s) 583, 667, 847, 858, 935, 1038, 1203, 1288
NlaIII CATG 5 cut(s) 32, 618, 746, 963, 1076
NlaIV GGNNCC 4 cut(s) 578, 1023, 1138, 1407
NmuCI GTSAC 2 cut(s) 554, 1087
NsbI TGCGCA 1 cut(s) 1145
NsiI ATGCAT 1 cut(s) 400
NspI RCATGY 2 cut(s) 618, 963
PciSI GCTCTTC 1 cut(s) 726
PctI GAATGC 2 cut(s) 315, 1038
PfeI GAWTC 6 cut(s) 193, 233, 295, 521, 707, 1459
PflMI CCANNNNNTGG 1 cut(s) 1124
PkrI GCNGC 6 cut(s) 741, 933, 1050, 1189, 1416, 1441
PleI GAGTC 3 cut(s) 249, 502, 955
PpsI GAGTC 3 cut(s) 249, 502, 955
Ppu21I YACGTR 1 cut(s) 1283
PshAI GACNNNNGTC 1 cut(s) 493
Psp6I CCWGG 2 cut(s) 579, 1024
PspGI CCWGG 2 cut(s) 579, 1024
PspN4I GGNNCC 4 cut(s) 578, 1023, 1138, 1407
PstI CTGCAG 1 cut(s) 1002
PstNI CAGNNNCTG 1 cut(s) 51
PsuI RGATCY 3 cut(s) 667, 858, 1038
PvuII CAGCTG 1 cut(s) 1048
RsaI GTAC 4 cut(s) 457, 561, 1138, 1307
RsaNI GTAC 4 cut(s) 456, 560, 1137, 1306
RseI CAYNNNNRTG 1 cut(s) 873
SapI GCTCTTC 1 cut(s) 726
SaqAI TTAA 2 cut(s) 900, 1495
SatI GCNGC 6 cut(s) 740, 932, 1049, 1188, 1415, 1440
Sau3AI GATC 8 cut(s) 583, 667, 847, 858, 935, 1038, 1203, 1288
SchI GAGTC 3 cut(s) 250, 503, 956
ScrFI CCNGG 5 cut(s) 108, 109, 581, 1026, 1344
SduI GDGCHC 2 cut(s) 42, 721
SfaNI GCATC 7 cut(s) 385, 407, 426, 515, 523, 559, 918
SfcI CTRYAG 1 cut(s) 998
SgrAI CRCCGGYG 1 cut(s) 61
SmaI CCCGGG 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 873
SmlI CTYRAG 3 cut(s) 683, 862, 1242
SmoI CTYRAG 3 cut(s) 683, 862, 1242
Sse9I AATT 6 cut(s) 130, 390, 602, 655, 799, 1098
SsiI CCGC 8 cut(s) 59, 164, 200, 263, 425, 1042, 1187, 1384
SspI AATATT 1 cut(s) 1110
SspMI CTAG 2 cut(s) 573, 951
StyD4I CCNGG 5 cut(s) 106, 107, 579, 1024, 1342
StyI CCWWGG 1 cut(s) 403
TaaI ACNGT 6 cut(s) 53, 73, 794, 1014, 1087, 1162
TaiI ACGT 4 cut(s) 493, 561, 1211, 1285
TaqI TCGA 1 cut(s) 188
TasI AATT 6 cut(s) 130, 390, 602, 655, 799, 1098
TatI WGTACW 1 cut(s) 455
TauI GCSGC 1 cut(s) 1190
TfiI GAWTC 6 cut(s) 193, 233, 295, 521, 707, 1459
Tru1I TTAA 2 cut(s) 900, 1495
Tru9I TTAA 2 cut(s) 900, 1495
TscAI CASTG 7 cut(s) 40, 556, 799, 919, 1090, 1167, 1453
TseFI GTSAC 2 cut(s) 554, 1087
TseI GCWGC 5 cut(s) 739, 931, 1048, 1414, 1439
Tsp45I GTSAC 2 cut(s) 554, 1087
TspDTI ATGAA 5 cut(s) 678, 717, 852, 1301, 1366
TspMI CCCGGG 1 cut(s) 107
TspRI CASTG 7 cut(s) 40, 556, 799, 919, 1090, 1167, 1453
Van91I CCANNNNNTGG 1 cut(s) 1124
XapI RAATTY 2 cut(s) 602, 799
XceI RCATGY 2 cut(s) 618, 963
XmaI CCCGGG 1 cut(s) 107
XspI CTAG 2 cut(s) 573, 951
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.