Rorug07G0129600

RNA-binding protein NOB1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001896
Physical Location & Seq
Reverse (-)
10268500 .. 10270283
1784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0129600.1

Sequence Viewer

Length: 792 bp
ATGGAAGGTGGTGGAAGGAATCATGGATATAAGAAAGGTCTATGGACAGCGGAGGAAGACAGAATTCTAACCGAGTATATCAAAGTCCATGGAAAAGGCAAGTGGAATCGAGTCACCAAAGTCACAGGATTGAAGAGGTGTGGGAAAAGCTGCAGATTGAGGTGGATGAACTATCTGAGCCCCACCGTGAAGCGTGGCGACTTCTCTGAGGAAGAAAACGATCTCATCATTCGCCTCCATAACCTCCTCGGAAACAGGTGGTCTCTGATAGCCGGACGGGTTCCGGGAAGAACCGACAACCAAGTAAAGAACCACTGGAATTCTCATTTGAGCAAAAAGCTCGGCGTGGCCAACAACTACAAAGGTGTAAAGAGCAAAGCCAAGAGTAGAAGTAGAAGTCATAGTAGTAGTAGTACTACTACTACTTCCTCAGACCAACAAGCAAGTAGTCCAAAAGAACAGTCCAACTCTGCAGAGCTACAGCAGCAGCCACTACCTGATTCGAATAGCGACGGCTATGGTGAAGCAGCAGCACCAGCTCGCCATGGATGTGATGATGATCATGGTCAGGAGATGATGATCAGCCGAGATATTGGTGTTGGGTTCAGTGGGATGTGGGAGACGATGATGATGGGTAGCAATAACAACTGTGATCAGGGCTCCTTTTGGTTTTACAATAATAATCAGGATGACCTAAATCTCTACAATCCTAATTATTTCATGGACCCTAGTCTAGATCATCACCATCTTCATAACTACTCTTATTCAATTTTTGAGGACATCGGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOB1_Zn_bind PIN_6

Protein Analysis

263

Amino Acids

29.78

Weight (kDa)

8.27

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 59 3.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 15 - 73 5.7e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 65 - 110 1.2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 68 - 113 2.8e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 50
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 2 cut(s) 63, 319
AfaI GTAC 1 cut(s) 415
AgsI TTSAA 2 cut(s) 133, 768
AluBI AGCT 4 cut(s) 150, 340, 478, 539
AluI AGCT 4 cut(s) 150, 340, 478, 539
Alw26I GTCTC 2 cut(s) 267, 614
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 5 cut(s) 150, 484, 487, 527, 530
ApoI RAATTY 2 cut(s) 63, 319
ArsI GACNNNNNNTTYG 2 cut(s) 446, 478
AspS9I GGNCC 1 cut(s) 724
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 3 cut(s) 106, 533, 734
AsuII TTCGAA 1 cut(s) 503
AvaII GGWCC 1 cut(s) 724
BalI TGGCCA 1 cut(s) 350
BanII GRGCYC 2 cut(s) 182, 662
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 5 cut(s) 137, 496, 499, 539, 542
BccI CCATC 2 cut(s) 625, 753
BceAI ACGGC 1 cut(s) 529
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BclI TGATCA 3 cut(s) 559, 579, 652
BcnI CCSGG 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 267, 614
BfaI CTAG 3 cut(s) 729, 734, 790
BfmI CTRYAG 3 cut(s) 151, 471, 479
BisI GCNGC 5 cut(s) 151, 485, 488, 528, 531
BlsI GCNGC 5 cut(s) 152, 486, 489, 529, 532
BmcAI AGTACT 1 cut(s) 415
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 1 cut(s) 724
BmgT120I GGNCC 1 cut(s) 724
BmiI GGNNCC 3 cut(s) 282, 661, 726
BmrFI CCNGG 1 cut(s) 285
BoxI GACNNNNGTC 1 cut(s) 729
BpiI GAAGAC 1 cut(s) 63
Bpu14I TTCGAA 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 285
BsaBI GATNNNNATC 2 cut(s) 558, 578
BsaI GGTCTC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 88, 247, 544
Bse1I ACTGG 1 cut(s) 320
Bse8I GATNNNNATC 2 cut(s) 558, 578
BseDI CCNNGG 3 cut(s) 88, 247, 544
BseGI GGATG 4 cut(s) 171, 554, 618, 694
BseJI GATNNNNATC 2 cut(s) 558, 578
BseMII CTCAG 3 cut(s) 167, 198, 444
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 5 cut(s) 137, 496, 499, 539, 542
BshFI GGCC 1 cut(s) 350
BsiSI CCGG 2 cut(s) 273, 284
BsmAI GTCTC 2 cut(s) 267, 614
BsmBI CGTCTC 1 cut(s) 614
BsnI GGCC 1 cut(s) 350
Bso31I GGTCTC 1 cut(s) 267
Bsp119I TTCGAA 1 cut(s) 503
Bsp1286I GDGCHC 2 cut(s) 182, 662
Bsp143I GATC 5 cut(s) 220, 559, 579, 652, 736
Bsp19I CCATGG 2 cut(s) 88, 544
BspACI CCGC 1 cut(s) 50
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 3 cut(s) 168, 199, 443
BspLI GGNNCC 3 cut(s) 282, 661, 726
BspMAI CTGCAG 2 cut(s) 155, 475
BspT104I TTCGAA 1 cut(s) 503
BspTNI GGTCTC 1 cut(s) 267
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 3 cut(s) 88, 247, 544
BssMI GATC 5 cut(s) 220, 559, 579, 652, 736
BssT1I CCWWGG 2 cut(s) 88, 544
Bst4CI ACNGT 3 cut(s) 187, 462, 650
Bst6I CTCTTC 1 cut(s) 128
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 541
BstDEI CTNAG 3 cut(s) 176, 207, 430
BstDSI CCRYGG 2 cut(s) 88, 544
BstF5I GGATG 4 cut(s) 171, 554, 618, 694
BstKTI GATC 5 cut(s) 223, 562, 582, 655, 739
BstMAI GTCTC 2 cut(s) 267, 614
BstMBI GATC 5 cut(s) 220, 559, 579, 652, 736
BstMWI GCNNNNNNNGC 2 cut(s) 484, 536
BstPAI GACNNNNGTC 1 cut(s) 729
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 3 cut(s) 151, 471, 479
BstV1I GCAGC 5 cut(s) 137, 496, 499, 539, 542
BstV2I GAAGAC 1 cut(s) 63
BsuRI GGCC 1 cut(s) 350
BtgI CCRYGG 2 cut(s) 88, 544
BtsCI GGATG 4 cut(s) 171, 554, 618, 694
BtsIMutI CAGTG 2 cut(s) 313, 613
Cac8I GCNNGC 1 cut(s) 541
Cfr13I GGNCC 1 cut(s) 724
Csp6I GTAC 1 cut(s) 414
CviAII CATG 5 cut(s) 23, 89, 545, 563, 721
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 3 cut(s) 176, 207, 430
DpnI GATC 5 cut(s) 222, 561, 581, 654, 738
DpnII GATC 5 cut(s) 220, 559, 579, 652, 736
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco130I CCWWGG 2 cut(s) 88, 544
Eco24I GRGCYC 2 cut(s) 182, 662
Eco31I GGTCTC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 724
EcoRI GAATTC 2 cut(s) 63, 319
EcoT14I CCWWGG 2 cut(s) 88, 544
EcoT38I GRGCYC 2 cut(s) 182, 662
ErhI CCWWGG 2 cut(s) 88, 544
Esp3I CGTCTC 1 cut(s) 614
FaeI CATG 5 cut(s) 26, 92, 548, 566, 724
FatI CATG 5 cut(s) 22, 88, 544, 562, 720
FbaI TGATCA 3 cut(s) 559, 579, 652
Fnu4HI GCNGC 5 cut(s) 151, 485, 488, 528, 531
FokI GGATG 4 cut(s) 178, 561, 625, 701
FriOI GRGCYC 2 cut(s) 182, 662
Fsp4HI GCNGC 5 cut(s) 151, 485, 488, 528, 531
FspBI CTAG 3 cut(s) 729, 734, 790
GluI GCNGC 5 cut(s) 151, 485, 488, 528, 531
HaeIII GGCC 1 cut(s) 350
HapII CCGG 2 cut(s) 273, 284
Hin1II CATG 5 cut(s) 26, 92, 548, 566, 724
HinfI GANTC 4 cut(s) 19, 106, 111, 500
HpaII CCGG 2 cut(s) 273, 284
HphI GGTGA 3 cut(s) 106, 533, 734
Hpy188I TCNGA 5 cut(s) 177, 208, 251, 267, 433
Hpy188III TCNNGA 3 cut(s) 569, 686, 734
Hpy99I CGWCG 1 cut(s) 515
HpyAV CCTTC 1 cut(s) 9
HpyCH4III ACNGT 3 cut(s) 187, 462, 650
HpyCH4V TGCA 2 cut(s) 153, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 484, 536
HpyF3I CTNAG 3 cut(s) 176, 207, 430
Hsp92II CATG 5 cut(s) 26, 92, 548, 566, 724
Ksp22I TGATCA 3 cut(s) 559, 579, 652
Kzo9I GATC 5 cut(s) 220, 559, 579, 652, 736
LmnI GCTCC 1 cut(s) 665
Lsp1109I GCAGC 5 cut(s) 137, 496, 499, 539, 542
MaeI CTAG 3 cut(s) 729, 734, 790
MaeIII GTNAC 2 cut(s) 112, 121
MalI GATC 5 cut(s) 222, 561, 581, 654, 738
MboI GATC 5 cut(s) 220, 559, 579, 652, 736
MboII GAAGA 5 cut(s) 68, 145, 224, 300, 740
MhlI GDGCHC 2 cut(s) 182, 662
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 4 cut(s) 63, 319, 712, 768
MluNI TGGCCA 1 cut(s) 350
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 9 cut(s) 46, 129, 153, 202, 245, 254, 257, 439, 769
Mox20I TGGCCA 1 cut(s) 350
MscI TGGCCA 1 cut(s) 350
MslI CAYNNNNRTG 1 cut(s) 549
Msp20I TGGCCA 1 cut(s) 350
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 2 cut(s) 273, 284
MspR9I CCNGG 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 484, 536
NciI CCSGG 1 cut(s) 285
NcoI CCATGG 2 cut(s) 88, 544
NdeII GATC 5 cut(s) 220, 559, 579, 652, 736
NlaIII CATG 5 cut(s) 26, 92, 548, 566, 724
NlaIV GGNNCC 3 cut(s) 282, 661, 726
NmeAIII GCCGAG 2 cut(s) 321, 611
NmuCI GTSAC 2 cut(s) 112, 121
NspV TTCGAA 1 cut(s) 503
PfeI GAWTC 3 cut(s) 19, 106, 500
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 5 cut(s) 152, 486, 489, 529, 532
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PshAI GACNNNNGTC 1 cut(s) 729
PspN4I GGNNCC 3 cut(s) 282, 661, 726
PspPI GGNCC 1 cut(s) 724
PstI CTGCAG 2 cut(s) 155, 475
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
RseI CAYNNNNRTG 1 cut(s) 549
SatI GCNGC 5 cut(s) 151, 485, 488, 528, 531
Sau3AI GATC 5 cut(s) 220, 559, 579, 652, 736
Sau96I GGNCC 1 cut(s) 724
ScaI AGTACT 1 cut(s) 415
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 2 cut(s) 182, 662
SfcI CTRYAG 3 cut(s) 151, 471, 479
SfuI TTCGAA 1 cut(s) 503
SinI GGWCC 1 cut(s) 724
SmiMI CAYNNNNRTG 1 cut(s) 549
Sse9I AATT 4 cut(s) 63, 319, 712, 768
SsiI CCGC 1 cut(s) 50
SspMI CTAG 3 cut(s) 729, 734, 790
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 2 cut(s) 88, 544
TaaI ACNGT 3 cut(s) 187, 462, 650
TaqI TCGA 2 cut(s) 109, 503
TasI AATT 4 cut(s) 63, 319, 712, 768
TatI WGTACW 1 cut(s) 413
TfiI GAWTC 3 cut(s) 19, 106, 500
TscAI CASTG 2 cut(s) 320, 613
TseFI GTSAC 2 cut(s) 112, 121
TseI GCWGC 5 cut(s) 150, 484, 487, 527, 530
Tsp45I GTSAC 2 cut(s) 112, 121
TspDTI ATGAA 3 cut(s) 182, 709, 740
TspRI CASTG 2 cut(s) 320, 613
VpaK11BI GGWCC 1 cut(s) 724
XapI RAATTY 2 cut(s) 63, 319
XbaI TCTAGA 1 cut(s) 733
XspI CTAG 3 cut(s) 729, 734, 790
ZrmI AGTACT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.