Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001896

Physical Location & Seq

Genomic Coordinates Forward (+)

40664155 .. 40667262

Gene Structure 3108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00247320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1806 bp

ATGGACGCCACCGTCACCCCAGCCCCAATCCCCGACCCGAACGCCGCCCCAGTCGTCTCCTGTTGGAGCAACATCGTGAAGAAGCAGCCGGACCCAAAGCCCCAAAACTCCTCCGACTCCTCCTCAATCGCCGCCGGCAAAGTATTCGTCGAAAGCTGTAAGTCCTCCAAGGGCATAGCCGTCGCCGTCGTCGACGCCAATGCTATCATTCAAGGCGGCGAGACCCTCGCCCACTGCGCCGACAAGTTCGTCTCCGTCCCAGAGGTCATGGACGAGGTCCGTGACCCTGTTTCCCGCCACCGCCTCGCCGTCGTTCCCTTCCAAGTTCAGACCATGGAACCCTCCCCCGAATCCCTCAATAAAGTTGTTAAGTTTGCGAGGGCTACTGGGGATTTACAGACACTGTCAGATGTGGATGTTAAGCTCATTGCTATGACTTATACATTGGAGGCTCAGATACATGGCACTGAGCACCTCAGGGACTGTCCTCCGCCGGTGCATACTGTCAATGTGAGGAGGTTGCCGGAGAAGGACCTGCCTGGGTGGGGAAATAATGTGCCTAACTTGGAAGAGTGGGAAGCGCTGGAGAACGAAGCGGAGGATAAGTTGAACCCCAGTTCGAGGATTCTTCCATTGAAAGATATAAACTTGAATGTTATTGAGGATTCTGAGAGCCGTTCCGTTGATGGTTCTGCGGTGGAAGTTAGGAGTGATGTTCGTTCTGAGAATCAGGAGGGTGGTGAGGGCATTCAGGAGAGACATAGGAGATATTTTCAAAAGAAGAAAGAGATAAAGATTGAAGGGAAGATGGTTTCGGATGGAATTGATGCATCCCAAGGACAAGCTGATGATAATGCGGGTGATTGGATGCCTGCCGTCAGTCGGAGTACACATAGAAGGTTTTTGAGAAGAAAAGCTAGACGTGAGTCTTATGAGGCATCGGCTGATAATGATTCTCAGCAAGATGCTGAGGAAAACACCAGTGGTGACGAACTTGTAGATGCTAGGAGCCTGGATCAAACATCGCCTTCTAAATTTGAAGAGGCATGTTGCAGACCTGTGGAGAGTGAGATGACAGAAGAGAAGAATTGTGATGAAGTTCTTTCCTCAATCCTTGAGCAGCATGGGGTTGAGGATAATGATTTCAAAGCAGGGGAAAGCACTTCTGATAATGGTGTGAATTTTTCTGTTGAGGGAGATGAGGTTGAAGTGATAAATGAAGGTCTGGATCACTTGGAGATCTCAAGTCATAATGATGGTAGTGTTGATACATCAAATGTTAACGATGATAGCAGTGAGCAGAGCTGGATGTTGCGATCCTTGTCTGAGTCAAGTGTAGCATGTATAACAAGTGATTTTGCAATGCAAAATGTTATTCTGCAGATGGGTTTACGGTTGTTGGCACCAGGAGGAATGCAGATCCGCCAGCTGCACAGGTGGATTTTGAAATGCCATGCTTGTAACACTGTGACTGCTGAAATTGGGAGAATATTTTGTCCAAAGTGTGGAAATGGTGGTACCTTGCGCAAGGTAGCAGTTACAGTGGGTGAGAATGGGATTATTCTTGCGGCACGTAAGCCTCGGATCACGTTGCGTGGCACAAGATTTTCACTTCCTTTACCTCAAGGTGGAAGAAATGCCATTACTAAGAACCCTGTTTTACGTGAGGATCAGCTCCCACAAAAGTACCTTCATCCAAAGACAAAAAAAAAGCAAATAAACCGGGAGATGACGACCTATTCACTTCCAATGACTTCATCTTCCGCCACCATTCTGATAAAAAGGCTCCTTTGCAGCCTCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

NOB1_Zn_bind PIN_6

Protein Analysis

601

Amino Acids

66.14

Weight (kDa)

5.22

Isoelectric Point (pI)

58.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIN_6	PF17146	63 - 149	4.7e-26	PIN domain of ribonuclease
Zn_ribbon_NOB1	PF08772	474 - 544	6e-22	Nin one binding (NOB1) Zn-ribbon like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41190
fragaria_vesca	FvH4_5g23090
malus_domestica	MD14G1101800.v1.1
prunus_persica	Prupe.5G097400_v2.0.a1
pyrus_communis	pycom06g07650 pycom14g09860
rosa_chinensis	RchiOBHm_Chr2g0099081 RchiOBHm_Chr7g0179141 RchiOBHm_Chr7g0211871 RchiOBHm_Chr7g0211921 RchiOBHm_Chr7g0211961
rosa_laevigata	RLG00000002953 RLG00000002956 RLG00000005381 RLG00000016846 RLG00000021575
rosa_multiflora	Rmu_sc0000888.1_g000019 Rmu_sc0009005.1_g000003 Rmu_sc0017524.1_g000001 Rmu_sc0018807.1_g000007 Rmu_sc0022966.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143460 Rroxscaffold_3G00247290 Rroxscaffold_3G00247320 Rroxscaffold_3G00274270 Rroxscaffold_3G00274340
rosa_rugosa	Rorug02G0076500 Rorug06G0421300 Rorug07G0129500 Rorug07G0129600
rosa_samantha	Rh2AG125600 Rh2BG128900 Rh2CG129900 Rh2DG130300 Rh7AG020500 Rh7AG262400 Rh7BG020600 Rh7BG255900 Rh7CG021700 Rh7CG278400 Rh7DG021100 Rh7DG268900 Rh7DG269200
rosa_wichuraiana	Rw7G001720 Rw7G022370 Rw7G022390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	11, 248
Acc16I	TGCGCA	1 cut(s)	1526
Acc36I	ACCTGC	1 cut(s)	543
Acc65I	GGTACC	1 cut(s)	1517
AccB1I	GGYRCC	2 cut(s)	1402, 1517
AccB7I	CCANNNNNTGG	1 cut(s)	1505
AccI	GTMKAC	1 cut(s)	192
AclWI	GGATC	6 cut(s)	1023, 1236, 1311, 1414, 1592, 1677
AcsI	RAATTY	2 cut(s)	1034, 1180
AcyI	GRCGYC	2 cut(s)	6, 195
AfaI	GTAC	3 cut(s)	889, 1519, 1688
AfeI	AGCGCT	1 cut(s)	582
AfiI	CCNNNNNNNGG	5 cut(s)	545, 621, 882, 1505, 1628
AjiI	CACGTC	1 cut(s)	923
AjnI	CCWGG	3 cut(s)	538, 1011, 1405
AluBI	AGCT	7 cut(s)	156, 424, 845, 917, 1305, 1429, 1675
AluI	AGCT	7 cut(s)	156, 424, 845, 917, 1305, 1429, 1675
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	4 cut(s)	61, 215, 256, 751
AlwI	GGATC	6 cut(s)	1023, 1236, 1311, 1414, 1592, 1677
AlwNI	CAGNNNCTG	2 cut(s)	403, 483
Aor51HI	AGCGCT	1 cut(s)	582
ApeKI	GCWGC	4 cut(s)	85, 1120, 1429, 1794
ApoI	RAATTY	2 cut(s)	1034, 1180
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
Asp718I	GGTACC	1 cut(s)	1517
AspLEI	GCGC	3 cut(s)	239, 583, 1527
AspS9I	GGNCC	3 cut(s)	91, 277, 532
AsuC2I	CCSGG	1 cut(s)	1724
AsuHPI	GGTGA	5 cut(s)	7, 752, 872, 998, 1559
AvaII	GGWCC	3 cut(s)	91, 277, 532
AxyI	CCTNAGG	1 cut(s)	476
BaeI	ACNNNNGTAYC	2 cut(s)	1670, 1703
BanI	GGYRCC	2 cut(s)	1402, 1517
Bbv12I	GWGCWC	1 cut(s)	474
BbvCI	CCTCAGC	1 cut(s)	969
BbvI	GCAGC	3 cut(s)	97, 1132, 1416
BccI	CCATC	5 cut(s)	680, 802, 812, 1250, 1378
BceAI	ACGGC	5 cut(s)	164, 170, 293, 660, 860
BcgI	CGANNNNNNTGC	6 cut(s)	127, 161, 163, 182, 197, 216
BciT130I	CCWGG	3 cut(s)	540, 1013, 1407
BcnI	CCSGG	1 cut(s)	1724
BcoDI	GTCTC	4 cut(s)	61, 215, 256, 751
BfaI	CTAG	2 cut(s)	918, 1005
BfmI	CTRYAG	1 cut(s)	1379
BfoI	RGCGCY	1 cut(s)	584
BfuAI	ACCTGC	1 cut(s)	543
BglII	AGATCT	1 cut(s)	1239
BisI	GCNGC	8 cut(s)	45, 86, 132, 217, 1121, 1430, 1569, 1795
BlsI	GCNGC	8 cut(s)	46, 87, 133, 218, 1122, 1431, 1570, 1796
Bme1390I	CCNGG	4 cut(s)	540, 1013, 1407, 1724
Bme18I	GGWCC	3 cut(s)	91, 277, 532
BmgBI	CACGTC	1 cut(s)	923
BmgT120I	GGNCC	3 cut(s)	91, 277, 532
BmiI	GGNNCC	6 cut(s)	93, 339, 1010, 1404, 1519, 1787
BmrFI	CCNGG	4 cut(s)	540, 1013, 1407, 1724
BmrI	ACTGGG	3 cut(s)	44, 396, 609
BmsI	GCATC	6 cut(s)	817, 839, 858, 947, 955, 991
BmuI	ACTGGG	3 cut(s)	44, 396, 609
BoxI	GACNNNNGTC	1 cut(s)	925
BpmI	CTGGAG	1 cut(s)	605
Bpu10I	CCTNAGC	1 cut(s)	969
BpuEI	CTTGAG	3 cut(s)	1136, 1228, 1608
BpuMI	CCSGG	1 cut(s)	1724
BsaAI	YACGTR	2 cut(s)	1574, 1664
BsaHI	GRCGYC	2 cut(s)	6, 195
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	5 cut(s)	168, 333, 539, 835, 1580
BsaXI	ACNNNNNCTCC	4 cut(s)	590, 620, 1188, 1218
Bsc4I	CCNNNNNNNGG	5 cut(s)	545, 621, 882, 1505, 1628
Bse118I	RCCGGY	2 cut(s)	134, 493
Bse1I	ACTGG	4 cut(s)	50, 391, 615, 981
Bse21I	CCTNAGG	1 cut(s)	476
Bse3DI	GCAATG	2 cut(s)	426, 1368
BseBI	CCWGG	3 cut(s)	540, 1013, 1407
BseDI	CCNNGG	5 cut(s)	168, 333, 539, 835, 1580
BseGI	GGATG	6 cut(s)	421, 823, 830, 873, 1314, 1693
BseLI	CCNNNNNNNGG	5 cut(s)	545, 621, 882, 1505, 1628
BseMI	GCAATG	2 cut(s)	426, 1368
BseMII	CTCAG	8 cut(s)	459, 467, 490, 660, 714, 960, 971, 1317
BseNI	ACTGG	4 cut(s)	50, 391, 615, 981
BseRI	GAGGAG	4 cut(s)	100, 109, 112, 529
BseXI	GCAGC	3 cut(s)	97, 1132, 1416
BseYI	CCCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	1415
BshNI	GGYRCC	2 cut(s)	1402, 1517
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	5 cut(s)	89, 135, 494, 524, 1723
BslFI	GGGAC	2 cut(s)	242, 494
BslI	CCNNNNNNNGG	5 cut(s)	545, 621, 882, 1505, 1628
BsmAI	GTCTC	4 cut(s)	61, 215, 256, 751
BsmBI	CGTCTC	2 cut(s)	61, 256
BsmFI	GGGAC	2 cut(s)	242, 494
BsmI	GAATGC	2 cut(s)	747, 1419
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	7 cut(s)	1015, 1228, 1239, 1316, 1419, 1584, 1669
Bsp19I	CCATGG	1 cut(s)	333
BspCNI	CTCAG	8 cut(s)	460, 466, 489, 661, 715, 961, 970, 1318
BspLI	GGNNCC	6 cut(s)	93, 339, 1010, 1404, 1519, 1787
BspMAI	CTGCAG	1 cut(s)	1383
BspMI	ACCTGC	1 cut(s)	543
BspPI	GGATC	6 cut(s)	1023, 1236, 1311, 1414, 1592, 1677
BspT107I	GGYRCC	2 cut(s)	1402, 1517
BspTNI	GGTCTC	1 cut(s)	215
BsrDI	GCAATG	2 cut(s)	426, 1368
BsrFI	RCCGGY	2 cut(s)	134, 493
BsrI	ACTGG	4 cut(s)	50, 391, 615, 981
BssAI	RCCGGY	2 cut(s)	134, 493
BssECI	CCNNGG	5 cut(s)	168, 333, 539, 835, 1580
BssMI	GATC	7 cut(s)	1015, 1228, 1239, 1316, 1419, 1584, 1669
BssNI	GRCGYC	2 cut(s)	6, 195
BssT1I	CCWWGG	3 cut(s)	168, 333, 835
Bst2UI	CCWGG	3 cut(s)	540, 1013, 1407
Bst4CI	ACNGT	7 cut(s)	13, 405, 485, 505, 1395, 1468, 1543
Bst6I	CTCTTC	3 cut(s)	564, 1035, 1074
BstACI	GRCGYC	2 cut(s)	6, 195
BstBAI	YACGTR	2 cut(s)	1574, 1664
BstC8I	GCNNGC	3 cut(s)	136, 873, 1427
BstDEI	CTNAG	9 cut(s)	453, 468, 476, 669, 723, 957, 969, 1326, 1647
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	6 cut(s)	421, 823, 830, 873, 1314, 1693
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	3 cut(s)	239, 583, 1527
BstKTI	GATC	7 cut(s)	1018, 1231, 1242, 1319, 1422, 1587, 1672
BstMAI	GTCTC	4 cut(s)	61, 215, 256, 751
BstMBI	GATC	7 cut(s)	1015, 1228, 1239, 1316, 1419, 1584, 1669
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	3 cut(s)	540, 1013, 1407
BstNSI	RCATGY	2 cut(s)	1050, 1344
BstPAI	GACNNNNGTC	1 cut(s)	925
BstSCI	CCNGG	4 cut(s)	538, 1011, 1405, 1722
BstSFI	CTRYAG	1 cut(s)	1379
BstV1I	GCAGC	3 cut(s)	97, 1132, 1416
BstX2I	RGATCY	2 cut(s)	1239, 1419
BstYI	RGATCY	2 cut(s)	1239, 1419
Bsu36I	CCTNAGG	1 cut(s)	476
BtgI	CCRYGG	1 cut(s)	333
BtgZI	GCGATG	1 cut(s)	1008
BtrI	CACGTC	1 cut(s)	923
BtsCI	GGATG	6 cut(s)	421, 823, 830, 873, 1314, 1693
BtsI	GCAGTG	2 cut(s)	232, 1300
BtsIMutI	CAGTG	7 cut(s)	232, 401, 465, 988, 1300, 1464, 1548
BveI	ACCTGC	1 cut(s)	543
Cac8I	GCNNGC	3 cut(s)	136, 873, 1427
CaiI	CAGNNNCTG	2 cut(s)	403, 483
CfoI	GCGC	3 cut(s)	239, 583, 1527
Cfr10I	RCCGGY	2 cut(s)	134, 493
Cfr13I	GGNCC	3 cut(s)	91, 277, 532
CseI	GACGC	2 cut(s)	14, 203
Csp6I	GTAC	3 cut(s)	888, 1518, 1687
CviAII	CATG	7 cut(s)	268, 334, 461, 1047, 1124, 1341, 1454
CviQI	GTAC	3 cut(s)	888, 1518, 1687
DdeI	CTNAG	9 cut(s)	453, 468, 476, 669, 723, 957, 969, 1326, 1647
DpnI	GATC	7 cut(s)	1017, 1230, 1241, 1318, 1421, 1586, 1671
DpnII	GATC	7 cut(s)	1015, 1228, 1239, 1316, 1419, 1584, 1669
DrdI	GACNNNNNNGTC	2 cut(s)	11, 248
DseDI	GACNNNNNNGTC	2 cut(s)	11, 248
Eam1104I	CTCTTC	3 cut(s)	564, 1035, 1074
EarI	CTCTTC	3 cut(s)	564, 1035, 1074
EciI	GGCGGA	3 cut(s)	480, 1412, 1753
Eco130I	CCWWGG	3 cut(s)	168, 333, 835
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	3 cut(s)	91, 277, 532
Eco47III	AGCGCT	1 cut(s)	582
Eco81I	CCTNAGG	1 cut(s)	476
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRII	CCWGG	3 cut(s)	538, 1011, 1405
EcoT14I	CCWWGG	3 cut(s)	168, 333, 835
EcoT22I	ATGCAT	1 cut(s)	832
ErhI	CCWWGG	3 cut(s)	168, 333, 835
Esp3I	CGTCTC	2 cut(s)	61, 256
FaeI	CATG	7 cut(s)	271, 337, 464, 1050, 1127, 1344, 1457
FaqI	GGGAC	2 cut(s)	242, 494
FatI	CATG	7 cut(s)	267, 333, 460, 1046, 1123, 1340, 1453
FauI	CCCGC	2 cut(s)	302, 850
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	8 cut(s)	45, 86, 132, 217, 1121, 1430, 1569, 1795
FokI	GGATG	6 cut(s)	428, 817, 830, 880, 1321, 1680
Fsp4HI	GCNGC	8 cut(s)	45, 86, 132, 217, 1121, 1430, 1569, 1795
FspBI	CTAG	2 cut(s)	918, 1005
FspI	TGCGCA	1 cut(s)	1526
GlaI	GCGC	3 cut(s)	238, 582, 1526
GluI	GCNGC	8 cut(s)	45, 86, 132, 217, 1121, 1430, 1569, 1795
GsaI	CCCAGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	605
HaeII	RGCGCY	1 cut(s)	584
HapII	CCGG	5 cut(s)	89, 135, 494, 524, 1723
HgaI	GACGC	2 cut(s)	14, 203
HhaI	GCGC	3 cut(s)	239, 583, 1527
Hin1I	GRCGYC	2 cut(s)	6, 195
Hin1II	CATG	7 cut(s)	271, 337, 464, 1050, 1127, 1344, 1457
Hin6I	GCGC	3 cut(s)	237, 581, 1525
HinP1I	GCGC	3 cut(s)	237, 581, 1525
HincII	GTYRAC	2 cut(s)	193, 1282
HindII	GTYRAC	2 cut(s)	193, 1282
HinfI	GANTC	8 cut(s)	116, 350, 625, 665, 727, 926, 953, 1328
HpaI	GTTAAC	1 cut(s)	1282
HpaII	CCGG	5 cut(s)	89, 135, 494, 524, 1723
HphI	GGTGA	5 cut(s)	7, 752, 872, 998, 1559
Hpy166II	GTNNAC	4 cut(s)	193, 890, 1282, 1391
Hpy188III	TCNNGA	4 cut(s)	76, 731, 752, 1226
Hpy8I	GTNNAC	4 cut(s)	193, 890, 1282, 1391
Hpy99I	CGWCG	6 cut(s)	152, 185, 191, 194, 197, 314
HpyAV	CCTTC	7 cut(s)	328, 523, 794, 891, 1038, 1214, 1700
HpyCH4III	ACNGT	7 cut(s)	13, 405, 485, 505, 1395, 1468, 1543
HpyCH4IV	ACGT	4 cut(s)	922, 1573, 1589, 1663
HpyCH4V	TGCA	9 cut(s)	499, 830, 1053, 1361, 1366, 1381, 1417, 1432, 1794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	9 cut(s)	453, 468, 476, 669, 723, 957, 969, 1326, 1647
HpySE526I	ACGT	4 cut(s)	922, 1573, 1589, 1663
Hsp92I	GRCGYC	2 cut(s)	6, 195
Hsp92II	CATG	7 cut(s)	271, 337, 464, 1050, 1127, 1344, 1457
HspAI	GCGC	3 cut(s)	237, 581, 1525
KpnI	GGTACC	1 cut(s)	1521
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
KspAI	GTTAAC	1 cut(s)	1282
Kzo9I	GATC	7 cut(s)	1015, 1228, 1239, 1316, 1419, 1584, 1669
LmnI	GCTCC	4 cut(s)	66, 1008, 1680, 1791
Lsp1109I	GCAGC	3 cut(s)	97, 1132, 1416
LweI	GCATC	6 cut(s)	817, 839, 858, 947, 955, 991
MaeI	CTAG	2 cut(s)	918, 1005
MaeII	ACGT	4 cut(s)	922, 1573, 1589, 1663
MaeIII	GTNAC	6 cut(s)	13, 281, 986, 1460, 1468, 1537
MalI	GATC	7 cut(s)	1017, 1230, 1241, 1318, 1421, 1586, 1671
MboI	GATC	7 cut(s)	1015, 1228, 1239, 1316, 1419, 1584, 1669
MflI	RGATCY	2 cut(s)	1239, 1419
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	5 cut(s)	822, 1034, 1087, 1180, 1479
MlyI	GAGTC	3 cut(s)	110, 935, 1337
MmeI	TCCRAC	3 cut(s)	44, 138, 863
Mph1103I	ATGCAT	1 cut(s)	832
MroNI	GCCGGC	1 cut(s)	134
MseI	TTAA	3 cut(s)	369, 420, 1281
MslI	CAYNNNNRTG	2 cut(s)	431, 1254
MspA1I	CMGCKG	1 cut(s)	1429
MspI	CCGG	5 cut(s)	89, 135, 494, 524, 1723
MspR9I	CCNGG	4 cut(s)	540, 1013, 1407, 1724
Mva1269I	GAATGC	2 cut(s)	747, 1419
MvaI	CCWGG	3 cut(s)	540, 1013, 1407
MwoI	GCNNNNNNNGC	1 cut(s)	236
NaeI	GCCGGC	1 cut(s)	136
NciI	CCSGG	1 cut(s)	1724
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	7 cut(s)	1015, 1228, 1239, 1316, 1419, 1584, 1669
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	7 cut(s)	271, 337, 464, 1050, 1127, 1344, 1457
NlaIV	GGNNCC	6 cut(s)	93, 339, 1010, 1404, 1519, 1787
NmuCI	GTSAC	4 cut(s)	13, 281, 986, 1468
NsbI	TGCGCA	1 cut(s)	1526
NsiI	ATGCAT	1 cut(s)	832
NspI	RCATGY	2 cut(s)	1050, 1344
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PctI	GAATGC	2 cut(s)	747, 1419
PdiI	GCCGGC	1 cut(s)	136
PfeI	GAWTC	5 cut(s)	350, 625, 665, 727, 953
PflFI	GACNNNGTC	2 cut(s)	275, 403
PflMI	CCANNNNNTGG	1 cut(s)	1505
PkrI	GCNGC	8 cut(s)	46, 87, 133, 218, 1122, 1431, 1570, 1796
PleI	GAGTC	3 cut(s)	110, 934, 1336
PpsI	GAGTC	3 cut(s)	110, 934, 1336
Ppu21I	YACGTR	2 cut(s)	1574, 1664
PpuMI	RGGWCCY	1 cut(s)	532
PshAI	GACNNNNGTC	1 cut(s)	925
Psp5II	RGGWCCY	1 cut(s)	532
Psp6I	CCWGG	3 cut(s)	538, 1011, 1405
PspFI	CCCAGC	1 cut(s)	19
PspGI	CCWGG	3 cut(s)	538, 1011, 1405
PspN4I	GGNNCC	6 cut(s)	93, 339, 1010, 1404, 1519, 1787
PspPI	GGNCC	3 cut(s)	91, 277, 532
PspPPI	RGGWCCY	1 cut(s)	532
PstI	CTGCAG	1 cut(s)	1383
PstNI	CAGNNNCTG	2 cut(s)	403, 483
PsuI	RGATCY	2 cut(s)	1239, 1419
PsyI	GACNNNGTC	2 cut(s)	275, 403
PvuII	CAGCTG	1 cut(s)	1429
RsaI	GTAC	3 cut(s)	889, 1519, 1688
RsaNI	GTAC	3 cut(s)	888, 1518, 1687
RseI	CAYNNNNRTG	2 cut(s)	431, 1254
SalI	GTCGAC	1 cut(s)	191
SaqAI	TTAA	3 cut(s)	369, 420, 1281
SatI	GCNGC	8 cut(s)	45, 86, 132, 217, 1121, 1430, 1569, 1795
Sau3AI	GATC	7 cut(s)	1015, 1228, 1239, 1316, 1419, 1584, 1669
Sau96I	GGNCC	3 cut(s)	91, 277, 532
SchI	GAGTC	3 cut(s)	110, 935, 1337
ScrFI	CCNGG	4 cut(s)	540, 1013, 1407, 1724
SduI	GDGCHC	1 cut(s)	474
SfaNI	GCATC	6 cut(s)	817, 839, 858, 947, 955, 991
SfcI	CTRYAG	1 cut(s)	1379
SgrAI	CRCCGGYG	1 cut(s)	493
SgrDI	CGTCGACG	1 cut(s)	191
SinI	GGWCC	3 cut(s)	91, 277, 532
SmiMI	CAYNNNNRTG	2 cut(s)	431, 1254
SmlI	CTYRAG	3 cut(s)	1115, 1243, 1623
SmoI	CTYRAG	3 cut(s)	1115, 1243, 1623
Sse9I	AATT	5 cut(s)	822, 1034, 1087, 1180, 1479
SspI	AATATT	1 cut(s)	1491
SspMI	CTAG	2 cut(s)	918, 1005
StyD4I	CCNGG	4 cut(s)	538, 1011, 1405, 1722
StyI	CCWWGG	3 cut(s)	168, 333, 835
TaaI	ACNGT	7 cut(s)	13, 405, 485, 505, 1395, 1468, 1543
TaiI	ACGT	4 cut(s)	925, 1576, 1592, 1666
TaqI	TCGA	3 cut(s)	150, 192, 620
TasI	AATT	5 cut(s)	822, 1034, 1087, 1180, 1479
TatI	WGTACW	1 cut(s)	887
TauI	GCSGC	4 cut(s)	47, 134, 219, 1571
TfiI	GAWTC	5 cut(s)	350, 625, 665, 727, 953
Tru1I	TTAA	3 cut(s)	369, 420, 1281
Tru9I	TTAA	3 cut(s)	369, 420, 1281
TscAI	CASTG	7 cut(s)	239, 408, 472, 988, 1300, 1471, 1548
TseFI	GTSAC	4 cut(s)	13, 281, 986, 1468
TseI	GCWGC	4 cut(s)	85, 1120, 1429, 1794
Tsp45I	GTSAC	4 cut(s)	13, 281, 986, 1468
TspDTI	ATGAA	4 cut(s)	1110, 1233, 1682, 1746
TspGWI	ACGGA	3 cut(s)	244, 269, 670
TspRI	CASTG	7 cut(s)	239, 408, 472, 988, 1300, 1471, 1548
Tth111I	GACNNNGTC	2 cut(s)	275, 403
Van91I	CCANNNNNTGG	1 cut(s)	1505
VpaK11BI	GGWCC	3 cut(s)	91, 277, 532
XapI	RAATTY	2 cut(s)	1034, 1180
XceI	RCATGY	2 cut(s)	1050, 1344
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	2 cut(s)	918, 1005
Zsp2I	ATGCAT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.