Rorug06G0421300

RNA-binding protein NOB1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001896
Physical Location & Seq
Forward (+)
55978693 .. 55979562
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0421300.1

Sequence Viewer

Length: 870 bp
ATGGCTCTCCCTCAGCTCATTCCCTCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCCTCCACCATAAACCCTCCTTCAATCCCAATCCACTCCCCTATCCCCTATTCCCAAACCCTAATTTCTTCTCTTCCCGCCTCCGCCGCCAGCGACACCGCTCTTCCTCCCTCAAATGCTCCGCCTCCTCCTTCTCCGAGCGCCACCACACCAACTCCAAGTCCGACGACGTCGTCGAGCTCCCGCTCTTTCCCTTGCCGCTCGTCCTCTTCCCCGGCGCGATTCTGCCGCTGCAGATCTTCGAGTTCCGGTACCGGATGATGATGCACTCGCTCCTCCAGACCGATCTCCGCTTCGGCGTCATCTACAGCGACGCCGTCTCCGGCACTGCCGACGTCGGCTGCGTCGGCGAGGTCGTCAAGCACGAGCGGCTCGTCGACGACCGGTTCTTCCTGATTTGTAAAGGTCAGGAGCGTTTTAGGGTTACGGACCTGGTCCGGACCAAGCCCTACCTGGTGGCGGAGGTCAAGTGGCTGGAGGACCGGCCGTCCGGCGACGGCGAGGAGGACCTGGACACATTGGCCACCGAGGTTGAGTCCTACATGAAGGACGTGATTCGGCTCTCCAACCGGCTCGGCGGCAAGCCGGAGAAGGAGGTGCAGGACCTGAGGCGGAACCTATTTCCGACGCCGTTCTCGTTCTTCGTCGGAAGCACTTTCGAAGGCGCGCCGAGGGAGCAGCAGGCCTTGCTGGAGTTGGAGGACACGGCGGCGAGGCTGAAGAGGGAGAAGGAGACGCTGAGGAACACGCTCAACTACTTGACGGCGGCGTCCGCCGTTAAAGACGTCTTTCCGTCGTCGTCGTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOB1_Zn_bind PIN_6

Protein Analysis

289

Amino Acids

32.61

Weight (kDa)

7.07

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LON_substr_bdg PF02190 79 - 266 4e-29 ATP-dependent protease La (LON) substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 230, 826
AatII GACGTC 3 cut(s) 231, 396, 846
Acc65I GGTACC 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 309
AccBSI CCGCTC 4 cut(s) 159, 244, 259, 427
AccI GTMKAC 1 cut(s) 435
AccII CGCG 2 cut(s) 278, 725
AccIII TCCGGA 1 cut(s) 495
AcoI YGGCCR 2 cut(s) 542, 579
AcuI CTGAAG 1 cut(s) 797
AcyI GRCGYC 7 cut(s) 228, 357, 372, 393, 686, 827, 843
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 517
AgeI ACCGGT 1 cut(s) 441
AgsI TTSAA 1 cut(s) 82
AhdI GACNNNNNGTC 1 cut(s) 544
AjiI CACGTC 1 cut(s) 610
AjnI CCWGG 3 cut(s) 489, 510, 567
AluBI AGCT 2 cut(s) 16, 238
AluI AGCT 2 cut(s) 16, 238
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 2 cut(s) 382, 785
AlwNI CAGNNNCTG 1 cut(s) 664
Aor13HI TCCGGA 1 cut(s) 495
AoxI GGCC 3 cut(s) 542, 579, 741
ApeKI GCWGC 3 cut(s) 289, 399, 736
AscI GGCGCGCC 1 cut(s) 723
AsiGI ACCGGT 1 cut(s) 441
Asp718I GGTACC 1 cut(s) 309
AspLEI GCGC 4 cut(s) 201, 278, 725, 727
AspS9I GGNCC 6 cut(s) 487, 493, 498, 538, 565, 661
AsuC2I CCSGG 1 cut(s) 273
AsuII TTCGAA 1 cut(s) 717
AvaII GGWCC 6 cut(s) 487, 493, 498, 538, 565, 661
AxyI CCTNAGG 1 cut(s) 665
BalI TGGCCA 1 cut(s) 581
BanI GGYRCC 1 cut(s) 309
BanII GRGCYC 1 cut(s) 240
BauI CACGAG 1 cut(s) 422
BbsI GAAGAC 1 cut(s) 855
Bbv12I GWGCWC 1 cut(s) 240
BbvCI CCTCAGC 2 cut(s) 12, 797
BbvI GCAGC 3 cut(s) 276, 386, 748
BceAI ACGGC 7 cut(s) 359, 529, 571, 673, 780, 818, 837
BciT130I CCWGG 3 cut(s) 491, 512, 569
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 382, 785
BfmI CTRYAG 2 cut(s) 290, 364
BfoI RGCGCY 1 cut(s) 202
BglII AGATCT 1 cut(s) 294
Bme1390I CCNGG 4 cut(s) 273, 491, 512, 569
Bme18I GGWCC 6 cut(s) 487, 493, 498, 538, 565, 661
BmeRI GACNNNNNGTC 1 cut(s) 544
BmgBI CACGTC 1 cut(s) 610
BmgT120I GGNCC 6 cut(s) 487, 493, 498, 538, 565, 661
BmiI GGNNCC 2 cut(s) 311, 674
BmrFI CCNGG 4 cut(s) 273, 491, 512, 569
BmsI GCATC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 855
BpmI CTGGAG 3 cut(s) 320, 554, 770
Bpu10I CCTNAGC 2 cut(s) 12, 797
Bpu14I TTCGAA 1 cut(s) 717
BpuMI CCSGG 1 cut(s) 273
BsaHI GRCGYC 7 cut(s) 228, 357, 372, 393, 686, 827, 843
BsaJI CCNNGG 3 cut(s) 271, 585, 728
BsaWI WCCGGW 4 cut(s) 306, 312, 441, 495
BsaXI ACNNNNNCTCC 6 cut(s) 197, 227, 362, 392, 512, 542
Bsc4I CCNNNNNNNGG 1 cut(s) 517
Bse118I RCCGGY 3 cut(s) 441, 540, 627
Bse21I CCTNAGG 1 cut(s) 665
BseAI TCCGGA 1 cut(s) 495
BseBI CCWGG 3 cut(s) 491, 512, 569
BseDI CCNNGG 3 cut(s) 271, 585, 728
BseGI GGATG 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 517
BseMII CTCAG 3 cut(s) 26, 656, 788
BsePI GCGCGC 1 cut(s) 723
BseRI GAGGAG 3 cut(s) 175, 323, 575
BseX3I CGGCCG 1 cut(s) 542
BseXI GCAGC 3 cut(s) 276, 386, 748
BsgI GTGCAG 1 cut(s) 677
Bsh1236I CGCG 2 cut(s) 278, 725
Bsh1285I CGRYCG 2 cut(s) 442, 545
BshFI GGCC 3 cut(s) 544, 581, 743
BshNI GGYRCC 1 cut(s) 309
BshTI ACCGGT 1 cut(s) 441
BsiEI CGRYCG 2 cut(s) 442, 545
BsiHKAI GWGCWC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 517
BsmAI GTCTC 2 cut(s) 382, 785
BsmBI CGTCTC 2 cut(s) 382, 785
BsnI GGCC 3 cut(s) 544, 581, 743
Bsp119I TTCGAA 1 cut(s) 717
Bsp1286I GDGCHC 1 cut(s) 240
Bsp13I TCCGGA 1 cut(s) 495
Bsp143I GATC 2 cut(s) 294, 343
BspANI GGCC 3 cut(s) 544, 581, 743
BspCNI CTCAG 3 cut(s) 25, 657, 789
BspEI TCCGGA 1 cut(s) 495
BspFNI CGCG 2 cut(s) 278, 725
BspLI GGNNCC 2 cut(s) 311, 674
BspMAI CTGCAG 1 cut(s) 294
BspQI GCTCTTC 1 cut(s) 166
BspT104I TTCGAA 1 cut(s) 717
BspT107I GGYRCC 1 cut(s) 309
BsrBI CCGCTC 4 cut(s) 159, 244, 259, 427
BsrFI RCCGGY 3 cut(s) 441, 540, 627
BssAI RCCGGY 3 cut(s) 441, 540, 627
BssECI CCNNGG 3 cut(s) 271, 585, 728
BssHII GCGCGC 1 cut(s) 723
BssMI GATC 2 cut(s) 294, 343
BssNI GRCGYC 7 cut(s) 228, 357, 372, 393, 686, 827, 843
BssSI CACGAG 1 cut(s) 422
Bst2BI CACGAG 1 cut(s) 422
Bst2UI CCWGG 3 cut(s) 491, 512, 569
Bst6I CTCTTC 4 cut(s) 136, 166, 272, 773
BstACI GRCGYC 7 cut(s) 228, 357, 372, 393, 686, 827, 843
BstAPI GCANNNNNTGC 1 cut(s) 745
BstBI TTCGAA 1 cut(s) 717
BstC8I GCNNGC 4 cut(s) 149, 641, 725, 741
BstDEI CTNAG 3 cut(s) 12, 665, 797
BstF5I GGATG 1 cut(s) 321
BstFNI CGCG 2 cut(s) 278, 725
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 4 cut(s) 201, 278, 725, 727
BstKTI GATC 2 cut(s) 297, 346
BstMAI GTCTC 2 cut(s) 382, 785
BstMBI GATC 2 cut(s) 294, 343
BstMCI CGRYCG 2 cut(s) 442, 545
BstMWI GCNNNNNNNGC 6 cut(s) 144, 405, 427, 733, 745, 830
BstNI CCWGG 3 cut(s) 491, 512, 569
BstSCI CCNGG 4 cut(s) 271, 489, 510, 567
BstSFI CTRYAG 2 cut(s) 290, 364
BstUI CGCG 2 cut(s) 278, 725
BstV1I GCAGC 3 cut(s) 276, 386, 748
BstV2I GAAGAC 1 cut(s) 855
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BstZI CGGCCG 1 cut(s) 542
Bsu36I CCTNAGG 1 cut(s) 665
BsuRI GGCC 3 cut(s) 544, 581, 743
BtrI CACGTC 1 cut(s) 610
BtsCI GGATG 1 cut(s) 321
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 384
Cac8I GCNNGC 4 cut(s) 149, 641, 725, 741
CaiI CAGNNNCTG 1 cut(s) 664
CfoI GCGC 4 cut(s) 201, 278, 725, 727
Cfr10I RCCGGY 3 cut(s) 441, 540, 627
Cfr13I GGNCC 6 cut(s) 487, 493, 498, 538, 565, 661
CseI GACGC 6 cut(s) 346, 380, 391, 694, 802, 816
CsiI ACCWGGT 2 cut(s) 489, 510
Csp6I GTAC 1 cut(s) 310
CspAI ACCGGT 1 cut(s) 441
CspCI CAANNNNNGTGG 2 cut(s) 571, 606
CviAII CATG 1 cut(s) 601
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 3 cut(s) 12, 665, 797
DpnI GATC 2 cut(s) 296, 345
DpnII GATC 2 cut(s) 294, 343
DrdI GACNNNNNNGTC 2 cut(s) 230, 826
DriI GACNNNNNGTC 1 cut(s) 544
DseDI GACNNNNNNGTC 2 cut(s) 230, 826
EaeI YGGCCR 2 cut(s) 542, 579
EagI CGGCCG 1 cut(s) 542
Eam1104I CTCTTC 4 cut(s) 136, 166, 272, 773
Eam1105I GACNNNNNGTC 1 cut(s) 544
EarI CTCTTC 4 cut(s) 136, 166, 272, 773
EciI GGCGGA 5 cut(s) 131, 169, 533, 685, 820
Ecl136II GAGCTC 1 cut(s) 238
EclXI CGGCCG 1 cut(s) 542
Eco147I AGGCCT 1 cut(s) 743
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 6 cut(s) 487, 493, 498, 538, 565, 661
Eco52I CGGCCG 1 cut(s) 542
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 797
Eco81I CCTNAGG 1 cut(s) 665
EcoICRI GAGCTC 1 cut(s) 238
EcoO109I RGGNCCY 2 cut(s) 565, 661
EcoRII CCWGG 3 cut(s) 489, 510, 567
EcoT38I GRGCYC 1 cut(s) 240
Esp3I CGTCTC 2 cut(s) 382, 785
FaeI CATG 1 cut(s) 604
FaiI YATR 2 cut(s) 69, 602
FatI CATG 1 cut(s) 600
FauI CCCGC 2 cut(s) 143, 249
FblI GTMKAC 1 cut(s) 435
FokI GGATG 1 cut(s) 328
FriOI GRGCYC 1 cut(s) 240
GlaI GCGC 4 cut(s) 200, 277, 724, 726
GsuI CTGGAG 3 cut(s) 320, 554, 770
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 3 cut(s) 544, 581, 743
HgaI GACGC 6 cut(s) 346, 380, 391, 694, 802, 816
HhaI GCGC 4 cut(s) 201, 278, 725, 727
Hin1I GRCGYC 7 cut(s) 228, 357, 372, 393, 686, 827, 843
Hin1II CATG 1 cut(s) 604
Hin6I GCGC 4 cut(s) 199, 276, 723, 725
HinP1I GCGC 4 cut(s) 199, 276, 723, 725
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 3 cut(s) 280, 593, 613
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 4 cut(s) 196, 223, 684, 707
Hpy188III TCNNGA 5 cut(s) 337, 451, 467, 496, 867
Hpy8I GTNNAC 1 cut(s) 436
HpyAV CCTTC 7 cut(s) 39, 88, 199, 598, 643, 713, 781
HpyCH4IV ACGT 4 cut(s) 228, 393, 609, 843
HpyCH4V TGCA 3 cut(s) 292, 325, 658
HpyF10VI GCNNNNNNNGC 6 cut(s) 144, 405, 427, 733, 745, 830
HpyF3I CTNAG 3 cut(s) 12, 665, 797
HpySE526I ACGT 4 cut(s) 228, 393, 609, 843
Hsp92I GRCGYC 7 cut(s) 228, 357, 372, 393, 686, 827, 843
Hsp92II CATG 1 cut(s) 604
HspAI GCGC 4 cut(s) 199, 276, 723, 725
Kpn2I TCCGGA 1 cut(s) 495
KpnI GGTACC 1 cut(s) 313
Kzo9I GATC 2 cut(s) 294, 343
LguI GCTCTTC 1 cut(s) 166
LmnI GCTCC 5 cut(s) 182, 243, 336, 469, 733
Lsp1109I GCAGC 3 cut(s) 276, 386, 748
LweI GCATC 1 cut(s) 312
MabI ACCWGGT 2 cut(s) 489, 510
MaeII ACGT 4 cut(s) 228, 393, 609, 843
MaeIII GTNAC 1 cut(s) 481
MalI GATC 2 cut(s) 296, 345
MbiI CCGCTC 4 cut(s) 159, 244, 259, 427
MboI GATC 2 cut(s) 294, 343
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 240
MlsI TGGCCA 1 cut(s) 581
MluCI AATT 1 cut(s) 121
MluNI TGGCCA 1 cut(s) 581
MlyI GAGTC 1 cut(s) 602
MmeI TCCRAC 5 cut(s) 246, 648, 685, 707, 735
Mox20I TGGCCA 1 cut(s) 581
MroI TCCGGA 1 cut(s) 495
MscI TGGCCA 1 cut(s) 581
MseI TTAA 1 cut(s) 837
Msp20I TGGCCA 1 cut(s) 581
MspA1I CMGCKG 1 cut(s) 289
MspR9I CCNGG 4 cut(s) 273, 491, 512, 569
MvaI CCWGG 3 cut(s) 491, 512, 569
MvnI CGCG 2 cut(s) 278, 725
MwoI GCNNNNNNNGC 6 cut(s) 144, 405, 427, 733, 745, 830
NciI CCSGG 1 cut(s) 273
NdeII GATC 2 cut(s) 294, 343
NlaIII CATG 1 cut(s) 604
NlaIV GGNNCC 2 cut(s) 311, 674
NmeAIII GCCGAG 2 cut(s) 612, 753
NspV TTCGAA 1 cut(s) 717
PalAI GGCGCGCC 1 cut(s) 723
PauI GCGCGC 1 cut(s) 723
PceI AGGCCT 1 cut(s) 743
PciSI GCTCTTC 1 cut(s) 166
PcsI WCGNNNNNNNCGW 6 cut(s) 231, 399, 411, 420, 429, 692
PfeI GAWTC 2 cut(s) 280, 613
PflFI GACNNNGTC 4 cut(s) 227, 230, 374, 491
PinAI ACCGGT 1 cut(s) 441
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
PpuMI RGGWCCY 2 cut(s) 565, 661
Psp124BI GAGCTC 1 cut(s) 240
Psp5II RGGWCCY 2 cut(s) 565, 661
Psp6I CCWGG 3 cut(s) 489, 510, 567
PspGI CCWGG 3 cut(s) 489, 510, 567
PspN4I GGNNCC 2 cut(s) 311, 674
PspPI GGNCC 6 cut(s) 487, 493, 498, 538, 565, 661
PspPPI RGGWCCY 2 cut(s) 565, 661
PstI CTGCAG 1 cut(s) 294
PstNI CAGNNNCTG 1 cut(s) 664
PsuI RGATCY 1 cut(s) 294
PsyI GACNNNGTC 4 cut(s) 227, 230, 374, 491
PteI GCGCGC 1 cut(s) 723
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SacI GAGCTC 1 cut(s) 240
SalI GTCGAC 1 cut(s) 434
SapI GCTCTTC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 837
Sau3AI GATC 2 cut(s) 294, 343
Sau96I GGNCC 6 cut(s) 487, 493, 498, 538, 565, 661
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 4 cut(s) 273, 491, 512, 569
SduI GDGCHC 1 cut(s) 240
SexAI ACCWGGT 2 cut(s) 489, 510
SfaNI GCATC 1 cut(s) 312
SfcI CTRYAG 2 cut(s) 290, 364
SfuI TTCGAA 1 cut(s) 717
SgrDI CGTCGACG 1 cut(s) 434
SgsI GGCGCGCC 1 cut(s) 723
SinI GGWCC 6 cut(s) 487, 493, 498, 538, 565, 661
Sse9I AATT 1 cut(s) 121
SseBI AGGCCT 1 cut(s) 743
SstI GAGCTC 1 cut(s) 240
StuI AGGCCT 1 cut(s) 743
StyD4I CCNGG 4 cut(s) 271, 489, 510, 567
TaiI ACGT 4 cut(s) 231, 396, 612, 846
TaqI TCGA 4 cut(s) 234, 300, 435, 717
TaqII GACCGA 1 cut(s) 356
TasI AATT 1 cut(s) 121
TauI GCSGC 7 cut(s) 147, 259, 289, 430, 639, 770, 827
TfiI GAWTC 2 cut(s) 280, 613
Tru1I TTAA 1 cut(s) 837
Tru9I TTAA 1 cut(s) 837
TscAI CASTG 1 cut(s) 391
TseI GCWGC 3 cut(s) 289, 399, 736
TspDTI ATGAA 1 cut(s) 617
TspGWI ACGGA 2 cut(s) 500, 840
TspRI CASTG 1 cut(s) 391
Tth111I GACNNNGTC 4 cut(s) 227, 230, 374, 491
VpaK11BI GGWCC 6 cut(s) 487, 493, 498, 538, 565, 661
XcmI CCANNNNNNNNNTGG 1 cut(s) 508
XmiI GTMKAC 1 cut(s) 435
ZraI GACGTC 3 cut(s) 229, 394, 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.