Rh2BG128900

RNA-binding protein NOB1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001896
Physical Location & Seq
Reverse (-)
11019307 .. 11020269
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG128900.1

Sequence Viewer

Length: 963 bp
ATGGCCACCAGCAAAGTATTCGTCGGAAGCTGCAAGTCCTCTACGGGCATAGCCGTGGCCGTCGTAGATGCCAATGCTATAATTCAAGGCGGCGAGAGCCTCGGCCACTGTGCCGACAAGTTCGTCTCCGTCCCCGAAGTCATGGACGAGGTCCATGACCCTATTTCCCGCCACCGCCTCGCCGTCGTTCCGTTCCAAGTCCAGACCATGGAACCCTCCCCTGAATCCCTCAATAAAGTTATTAAGTTTGCGAGGGCTACTGGGGATTTACGGACACTGTCAGATGTGGATGTTAAGCTCATTGCTATGACTTATACATTGGAGGATCAGATACATGGCACTGAGCACCTCAGGGACTGTCCTCCGCCTGTGCATGCTATCCACAATTCGAAGATTCTTCCGTTGAAAGATATAAACATGAATGTTATCCATGATTCTGAGAGCCCTTCTGTTCATTCTGAGAATCAGGAGGGTGGTGAGGGGAGCCATAGGAGATATTTTCCAAAGAAGAAAGAGATAATAAAGATTGAAGGGGAGATAGTTTCTGACAGAATCGATGCGTTCCAAGGACAAGTAGATGATAATGCCGGTGATTGGATGCCTGTCGTCAGTCCGAGTACACATAGAAGGTTTTTGAGGAGAAAAGGTAAACGTGAGTCTTATGAGGCTTCGGCTGATAATATTTCTCAGCAAGATGCTGAGGAAAACACAAGTGGTGACCTACTTGTGGATCAAACATCGGCTTCTAAATTTTGCAGACCTGTGGAGGGTGAGATGACAGAGGAGAAGAATTGTGATGAAGATCTTTCCTCAATCCTCGAGCAAACAAGGCGTGATGAAGATTCAATTAGGGTTCTTCAAAAAGGGAAGGAGCAGAATGGGGTTGAGGATAATGATTTCAAAGCAGGGGAAAGCACTTCTGATAACGGTGTGAATTTTTCTGTTGAAGGATATGAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOB1_Zn_bind PIN_6

Protein Analysis

320

Amino Acids

35.39

Weight (kDa)

4.92

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIN_6 PF17146 21 - 107 1.2e-24 PIN domain of ribonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 208
AciI CCGC 4 cut(s) 90, 169, 175, 365
AclWI GGATC 2 cut(s) 333, 738
AcoI YGGCCR 3 cut(s) 3, 57, 103
AcsI RAATTY 2 cut(s) 749, 934
AfaI GTAC 1 cut(s) 619
AfiI CCNNNNNNNGG 4 cut(s) 208, 594, 727, 767
AgsI TTSAA 7 cut(s) 86, 406, 530, 846, 860, 901, 947
AluBI AGCT 2 cut(s) 30, 298
AluI AGCT 2 cut(s) 30, 298
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 2 cut(s) 333, 738
AlwNI CAGNNNCTG 1 cut(s) 357
Ama87I CYCGRG 1 cut(s) 818
AoxI GGCC 3 cut(s) 3, 57, 103
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 2 cut(s) 749, 934
ArsI GACNNNNNNTTYG 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 4 cut(s) 488, 602, 728, 782
AsuII TTCGAA 1 cut(s) 389
AvaI CYCGRG 1 cut(s) 818
AvaII GGWCC 1 cut(s) 151
AxyI CCTNAGG 1 cut(s) 350
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 446
Bbv12I GWGCWC 1 cut(s) 348
BbvCI CCTCAGC 1 cut(s) 699
BbvI GCAGC 1 cut(s) 17
BceAI ACGGC 3 cut(s) 38, 44, 167
BcgI CGANNNNNNTGC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 130
BglII AGATCT 1 cut(s) 802
BisI GCNGC 2 cut(s) 31, 91
BlsI GCNGC 2 cut(s) 32, 92
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 818
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 2 cut(s) 213, 485
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 4 cut(s) 58, 547, 588, 685
BmuI ACTGGG 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 699
Bpu14I TTCGAA 1 cut(s) 389
Bsa29I ATCGAT 1 cut(s) 555
BsaBI GATNNNNATC 1 cut(s) 801
BsaJI CCNNGG 4 cut(s) 54, 100, 207, 565
BsaXI ACNNNNNCTCC 2 cut(s) 631, 661
Bsc4I CCNNNNNNNGG 4 cut(s) 208, 594, 727, 767
Bse118I RCCGGY 1 cut(s) 587
Bse1I ACTGG 1 cut(s) 265
Bse21I CCTNAGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 300
Bse8I GATNNNNATC 1 cut(s) 801
BseCI ATCGAT 1 cut(s) 555
BseDI CCNNGG 4 cut(s) 54, 100, 207, 565
BseGI GGATG 2 cut(s) 295, 603
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 4 cut(s) 208, 594, 727, 767
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 6 cut(s) 333, 364, 429, 450, 690, 701
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 2 cut(s) 652, 797
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 3 cut(s) 5, 59, 105
BshVI ATCGAT 1 cut(s) 555
BsiHKAI GWGCWC 1 cut(s) 348
BsiHKCI CYCGRG 1 cut(s) 818
BsiSI CCGG 1 cut(s) 588
BslFI GGGAC 2 cut(s) 116, 368
BslI CCNNNNNNNGG 4 cut(s) 208, 594, 727, 767
BsmAI GTCTC 1 cut(s) 130
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 2 cut(s) 116, 368
BsnI GGCC 3 cut(s) 5, 59, 105
BsoBI CYCGRG 1 cut(s) 818
Bsp119I TTCGAA 1 cut(s) 389
Bsp1286I GDGCHC 2 cut(s) 348, 446
Bsp143I GATC 3 cut(s) 325, 730, 802
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 4 cut(s) 90, 169, 175, 365
BspANI GGCC 3 cut(s) 5, 59, 105
BspCNI CTCAG 6 cut(s) 334, 363, 430, 451, 691, 700
BspDI ATCGAT 1 cut(s) 555
BspLI GGNNCC 2 cut(s) 213, 485
BspPI GGATC 2 cut(s) 333, 738
BspT104I TTCGAA 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 300
BsrFI RCCGGY 1 cut(s) 587
BsrI ACTGG 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 587
BssECI CCNNGG 4 cut(s) 54, 100, 207, 565
BssMI GATC 3 cut(s) 325, 730, 802
BssT1I CCWWGG 2 cut(s) 207, 565
Bst4CI ACNGT 4 cut(s) 110, 279, 359, 929
BstBI TTCGAA 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 6 cut(s) 342, 350, 438, 459, 687, 699
BstDSI CCRYGG 2 cut(s) 54, 207
BstEII GGTNACC 1 cut(s) 716
BstF5I GGATG 2 cut(s) 295, 603
BstKTI GATC 3 cut(s) 328, 733, 805
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 3 cut(s) 325, 730, 802
BstMWI GCNNNNNNNGC 2 cut(s) 96, 829
BstNSI RCATGY 1 cut(s) 377
BstPI GGTNACC 1 cut(s) 716
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 802
BstYI RGATCY 1 cut(s) 802
Bsu15I ATCGAT 1 cut(s) 555
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 3 cut(s) 5, 59, 105
BsuTUI ATCGAT 1 cut(s) 555
BtgI CCRYGG 2 cut(s) 54, 207
BtsCI GGATG 2 cut(s) 295, 603
BtsIMutI CAGTG 3 cut(s) 106, 275, 339
Cac8I GCNNGC 1 cut(s) 375
CaiI CAGNNNCTG 1 cut(s) 357
Cfr10I RCCGGY 1 cut(s) 587
Cfr13I GGNCC 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 555
Csp6I GTAC 1 cut(s) 618
CviAII CATG 7 cut(s) 142, 155, 208, 335, 374, 418, 431
CviQI GTAC 1 cut(s) 618
DdeI CTNAG 6 cut(s) 342, 350, 438, 459, 687, 699
DpnI GATC 3 cut(s) 327, 732, 804
DpnII GATC 3 cut(s) 325, 730, 802
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 3 cut(s) 3, 57, 103
EciI GGCGGA 1 cut(s) 354
Eco130I CCWWGG 2 cut(s) 207, 565
Eco24I GRGCYC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 151
Eco81I CCTNAGG 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 818
Eco91I GGTNACC 1 cut(s) 716
EcoO65I GGTNACC 1 cut(s) 716
EcoT14I CCWWGG 2 cut(s) 207, 565
EcoT38I GRGCYC 1 cut(s) 446
ErhI CCWWGG 2 cut(s) 207, 565
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 7 cut(s) 145, 158, 211, 338, 377, 421, 434
FaqI GGGAC 2 cut(s) 116, 368
FatI CATG 7 cut(s) 141, 154, 207, 334, 373, 417, 430
FauI CCCGC 1 cut(s) 176
Fnu4HI GCNGC 2 cut(s) 31, 91
FokI GGATG 2 cut(s) 302, 610
FriOI GRGCYC 1 cut(s) 446
Fsp4HI GCNGC 2 cut(s) 31, 91
GluI GCNGC 2 cut(s) 31, 91
HaeIII GGCC 3 cut(s) 5, 59, 105
HapII CCGG 1 cut(s) 588
Hin1II CATG 7 cut(s) 145, 158, 211, 338, 377, 421, 434
HinfI GANTC 7 cut(s) 224, 394, 434, 463, 552, 656, 842
HpaII CCGG 1 cut(s) 588
HphI GGTGA 4 cut(s) 488, 602, 728, 782
Hpy166II GTNNAC 2 cut(s) 620, 650
Hpy188I TCNGA 8 cut(s) 26, 283, 330, 439, 460, 547, 615, 922
Hpy188III TCNNGA 2 cut(s) 202, 467
Hpy8I GTNNAC 2 cut(s) 620, 650
Hpy99I CGWCG 3 cut(s) 26, 65, 188
HpyAV CCTTC 5 cut(s) 456, 524, 621, 862, 941
HpyCH4III ACNGT 4 cut(s) 110, 279, 359, 929
HpyCH4IV ACGT 1 cut(s) 652
HpyCH4V TGCA 3 cut(s) 33, 373, 756
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 829
HpyF3I CTNAG 6 cut(s) 342, 350, 438, 459, 687, 699
HpySE526I ACGT 1 cut(s) 652
Hsp92II CATG 7 cut(s) 145, 158, 211, 338, 377, 421, 434
Kzo9I GATC 3 cut(s) 325, 730, 802
LmnI GCTCC 2 cut(s) 483, 871
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 4 cut(s) 58, 547, 588, 685
MaeII ACGT 1 cut(s) 652
MaeIII GTNAC 1 cut(s) 716
MalI GATC 3 cut(s) 327, 732, 804
MboI GATC 3 cut(s) 325, 730, 802
MboII GAAGA 7 cut(s) 389, 403, 520, 799, 812, 848, 851
MflI RGATCY 1 cut(s) 802
MhlI GDGCHC 2 cut(s) 348, 446
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 81, 385, 749, 790, 846, 934
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 665
MmeI TCCRAC 1 cut(s) 4
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 243, 294, 961
MslI CAYNNNNRTG 2 cut(s) 53, 305
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 588
MwoI GCNNNNNNNGC 2 cut(s) 96, 829
NcoI CCATGG 1 cut(s) 207
NdeII GATC 3 cut(s) 325, 730, 802
NlaIII CATG 7 cut(s) 145, 158, 211, 338, 377, 421, 434
NlaIV GGNNCC 2 cut(s) 213, 485
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 716
NspI RCATGY 1 cut(s) 377
NspV TTCGAA 1 cut(s) 389
PaeI GCATGC 1 cut(s) 377
PaeR7I CTCGAG 1 cut(s) 818
PfeI GAWTC 6 cut(s) 224, 394, 434, 463, 552, 842
PflFI GACNNNGTC 2 cut(s) 149, 277
PflMI CCANNNNNTGG 1 cut(s) 208
PkrI GCNGC 2 cut(s) 32, 92
PleI GAGTC 1 cut(s) 664
PpsI GAGTC 1 cut(s) 664
PspEI GGTNACC 1 cut(s) 716
PspN4I GGNNCC 2 cut(s) 213, 485
PspPI GGNCC 1 cut(s) 151
PspXI VCTCGAGB 1 cut(s) 818
PstNI CAGNNNCTG 1 cut(s) 357
PsuI RGATCY 1 cut(s) 802
PsyI GACNNNGTC 2 cut(s) 149, 277
RsaI GTAC 1 cut(s) 619
RsaNI GTAC 1 cut(s) 618
RseI CAYNNNNRTG 2 cut(s) 53, 305
SaqAI TTAA 3 cut(s) 243, 294, 961
SatI GCNGC 2 cut(s) 31, 91
Sau3AI GATC 3 cut(s) 325, 730, 802
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 1 cut(s) 665
SduI GDGCHC 2 cut(s) 348, 446
SfaNI GCATC 4 cut(s) 58, 547, 588, 685
Sfr274I CTCGAG 1 cut(s) 818
SfuI TTCGAA 1 cut(s) 389
SinI GGWCC 1 cut(s) 151
SlaI CTCGAG 1 cut(s) 818
SmiMI CAYNNNNRTG 2 cut(s) 53, 305
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
SphI GCATGC 1 cut(s) 377
Sse9I AATT 6 cut(s) 81, 385, 749, 790, 846, 934
SsiI CCGC 4 cut(s) 90, 169, 175, 365
SspI AATATT 1 cut(s) 682
StyI CCWWGG 2 cut(s) 207, 565
TaaI ACNGT 4 cut(s) 110, 279, 359, 929
TaiI ACGT 1 cut(s) 655
TaqI TCGA 3 cut(s) 389, 555, 819
TasI AATT 6 cut(s) 81, 385, 749, 790, 846, 934
TatI WGTACW 1 cut(s) 617
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 6 cut(s) 224, 394, 434, 463, 552, 842
Tru1I TTAA 3 cut(s) 243, 294, 961
Tru9I TTAA 3 cut(s) 243, 294, 961
TscAI CASTG 3 cut(s) 113, 282, 346
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 4 cut(s) 434, 443, 813, 852
TspGWI ACGGA 4 cut(s) 118, 180, 286, 390
TspRI CASTG 3 cut(s) 113, 282, 346
Tth111I GACNNNGTC 2 cut(s) 149, 277
Van91I CCANNNNNTGG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 2 cut(s) 749, 934
XceI RCATGY 1 cut(s) 377
XhoI CTCGAG 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.