Rh7DG269200

RNA-binding protein NOB1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001896
Physical Location & Seq
Reverse (-)
28744745 .. 28745425
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG269200.1

Sequence Viewer

Length: 348 bp
ATGGACGAGATACATGGCACTGAGCACCTCAGGGACTATCCTCCACCGGTGCATACTGTTAATGTGAGGAGGTTGCCAGATAAGGACTTGCCTGGGTGGGGAAATAATGTGCCTAATTTGGAAGAGTGGGAAGCGCTGGAGAATGAAGCGGAGGATAAGTTGAACCCCAGTTCAAGGATTCTTCCGCTGAAAGATATAAACTTGAATGTAATTGAGGATTCTGAGAGCCATTCTGTTGATGGTTCTACGGTGGAAGTTAGAAGTGATGTTCGTTCTGAGAATCAGGAGGGTGGTGAAGGCATTCAGGGGAGACATAGGAGATATTTTCCAAAGAAGAAAGAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOB1_Zn_bind PIN_6

Protein Analysis

115

Amino Acids

13.17

Weight (kDa)

4.97

Isoelectric Point (pI)

64.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 149, 185
AfeI AGCGCT 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 98, 174
AgeI ACCGGT 1 cut(s) 46
AgsI TTSAA 3 cut(s) 163, 174, 205
AjnI CCWGG 1 cut(s) 91
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 304
Aor51HI AGCGCT 1 cut(s) 135
AsiGI ACCGGT 1 cut(s) 46
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 305
AxyI CCTNAGG 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 27
BccI CCATC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 304
BfoI RGCGCY 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 93
BmrI ACTGGG 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 92
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 174
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 168
Bse21I CCTNAGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 92
BseLI CCNNNNNNNGG 2 cut(s) 98, 174
BseMII CTCAG 4 cut(s) 12, 43, 213, 267
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 82
BshTI ACCGGT 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 98, 174
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 47
BsmI GAATGC 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 27
BspACI CCGC 2 cut(s) 149, 185
BspCNI CTCAG 4 cut(s) 13, 42, 214, 268
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 2 cut(s) 58, 250
Bst6I CTCTTC 1 cut(s) 117
BstDEI CTNAG 4 cut(s) 21, 29, 222, 276
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 304
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
Bsu36I CCTNAGG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 18
CfoI GCGC 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 46
CspAI ACCGGT 1 cut(s) 46
CviAII CATG 1 cut(s) 14
CviJI RGCY 1 cut(s) 228
CviKI_1 RGCY 1 cut(s) 228
DdeI CTNAG 4 cut(s) 21, 29, 222, 276
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco47III AGCGCT 1 cut(s) 135
Eco81I CCTNAGG 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 91
FaeI CATG 1 cut(s) 17
FaiI YATR 5 cut(s) 15, 54, 197, 315, 346
FaqI GGGAC 1 cut(s) 47
FatI CATG 1 cut(s) 13
GlaI GCGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 158
HaeII RGCGCY 1 cut(s) 137
HapII CCGG 1 cut(s) 47
HhaI GCGC 1 cut(s) 136
Hin1II CATG 1 cut(s) 17
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HinfI GANTC 3 cut(s) 178, 218, 280
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 2 cut(s) 223, 277
Hpy188III TCNNGA 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 2 cut(s) 58, 250
HpyCH4V TGCA 1 cut(s) 52
HpyF3I CTNAG 4 cut(s) 21, 29, 222, 276
Hsp92II CATG 1 cut(s) 17
HspAI GCGC 1 cut(s) 134
LpnPI CCDG 9 cut(s) 16, 60, 78, 90, 105, 122, 181, 269, 290
MboII GAAGA 3 cut(s) 134, 173, 346
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 2 cut(s) 115, 210
MnlI CCTC 7 cut(s) 38, 51, 60, 63, 145, 208, 280
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 300
MvaI CCWGG 1 cut(s) 93
NlaIII CATG 1 cut(s) 17
PctI GAATGC 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 3 cut(s) 178, 218, 280
PinAI ACCGGT 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
SaqAI TTAA 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 1 cut(s) 27
SetI ASST 2 cut(s) 30, 74
SgrAI CRCCGGYG 1 cut(s) 46
Sse9I AATT 2 cut(s) 115, 210
SsiI CCGC 2 cut(s) 149, 185
StyD4I CCNGG 1 cut(s) 91
TaaI ACNGT 2 cut(s) 58, 250
TasI AATT 2 cut(s) 115, 210
TfiI GAWTC 3 cut(s) 178, 218, 280
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 1 cut(s) 25
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.