RLG00000033691

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001151
Physical Location & Seq
Forward (+)
30924265 .. 30926325
2061 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033691

Sequence Viewer

Length: 1278 bp
ATGGATAATGATGTGTTGCCTCAGTTTGTTTTTGCCGAAGGGTCTAGCAAAAGGTTCCGTACTGGACCTTGGAATGGTCTTCGATTCCCTGGCTCTTATGTTTCGAACAATACTAACACAGTTATAAAGCCAACTTTGGTGTACAATACCAATGAGATGTATTACACGTTCGAGGTTGCTGAAAGCTCTATTACTACAAGACTACAGCTGTCTGAATCGGGTGTGATGCAGCGGCTAGTGCTGAATAAGGGAAGCACAGAATGGGCCCTTATGTATACTTTGCAGGATGATCAGTGTAATAATTATGGGGAGTGTGGAGCAAATGGCATTTGCAGAATTAACAAGGTACCAATTTGCGATTGCTTGCAGGGGTTTATTCCTAGATCACCGAAAGAGTGGGTGGTGCTTAATAGGACAGGTGGTTGCAAAAGGGAGACGGCACTAGATTGCCAGAAGGGAGAAGGGTTTCTGAAACTGCAAAATGTGAAACCGCCAGACCTGCTGGATATTTGGGTGAACAAGAGCATGAGCACGGAGGAATGTGAGGCAAATTGCTTGAAGACATGTTCCTGCATAGCTTATGTTAATTCAGATATTCGGAGTGGAGGCAGTGGCTGTGTTATGTGGTTTGGAAATCTGATTGATATGCGGGAGTTTGTTGAGGATCTTGGTGCTACCAGACTTGCCAGCAAGAAGCATAACAGAGTAGTACTCATCTCTGTCCTATCAGCAGCTTCTGTGCTTCTTTTTCTGGGTTTGTTATGTTGGTGTGTAATTCTGAAGCAGAGACGAAACAAACGGGCTAATATACTTGCATTACGTTTTCAGGCCAAAATAACACAAGAAGAATCAATAGCAGTAAAGAGACTCTCAAAACACTCTGGGCAAGGTGTTGAAGAGTTTAAGAATGAAGTTACGATGATAGCCAATCTTCAACACCAGAACCTGGTTAAGCTTTTGGGCTGCTGCATTGAAGGAGAAGAAAGGATGCTAATCTACGAGTACATGCCCAACAAAAGCTTGGACTTCTTCATCTTCGATCAAAATAGAAAGGTGGTGTTGAGTTGGCAAAAGCGATTTGACATTATCATGGGGCTTGCAAGAGGATTACTCTACCTCCACCAAGACTCCAGAGTTAGAATCATTCACAGGGACCTTAAGAGTAGCAACATCCTACTTGACGATGAGCTGAACCCCAAAATATCTGACTTTGGCATAACAAGAATTTTCGGAAACAATCAAAGTGAAGCTAAAACCAAACGAGTAATTGGCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

426

Amino Acids

48.22

Weight (kDa)

8.77

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 19 - 128 2.6e-25 S-locus glycoprotein domain
PAN_2 PF08276 150 - 216 2.9e-21 PAN-like domain
PK_Tyr_Ser-Thr PF07714 278 - 418 2.7e-29 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 279 - 422 1e-26 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 125
Acc36I ACCTGC 1 cut(s) 507
Acc65I GGTACC 1 cut(s) 346
AccB1I GGYRCC 1 cut(s) 346
AccB7I CCANNNNNTGG 1 cut(s) 946
AccI GTMKAC 1 cut(s) 275
AciI CCGC 3 cut(s) 232, 491, 649
AclWI GGATC 1 cut(s) 672
AcsI RAATTY 1 cut(s) 1224
AcuI CTGAAG 1 cut(s) 800
AfaI GTAC 5 cut(s) 61, 143, 348, 711, 1004
AfiI CCNNNNNNNGG 2 cut(s) 74, 946
AflII CTTAAG 1 cut(s) 1157
AflIII ACRYGT 2 cut(s) 165, 563
AgsI TTSAA 4 cut(s) 559, 896, 935, 974
AjnI CCWGG 2 cut(s) 88, 945
AluBI AGCT 8 cut(s) 186, 208, 578, 734, 955, 1020, 1189, 1250
AluI AGCT 8 cut(s) 186, 208, 578, 734, 955, 1020, 1189, 1250
Alw21I GWGCWC 1 cut(s) 533
Alw26I GTCTC 3 cut(s) 428, 781, 859
AlwI GGATC 1 cut(s) 672
AlwNI CAGNNNCTG 3 cut(s) 615, 737, 946
AoxI GGCC 2 cut(s) 264, 828
ApaI GGGCCC 1 cut(s) 268
ApeKI GCWGC 4 cut(s) 229, 731, 963, 966
ApoI RAATTY 1 cut(s) 1224
Asp700I GAANNNNTTC 1 cut(s) 465
Asp718I GGTACC 1 cut(s) 346
AspS9I GGNCC 4 cut(s) 65, 264, 265, 1153
AsuHPI GGTGA 2 cut(s) 378, 526
AsuII TTCGAA 1 cut(s) 104
AvaII GGWCC 2 cut(s) 65, 1153
BaeGI GKGCMC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 268
BbsI GAAGAC 2 cut(s) 71, 566
Bbv12I GWGCWC 1 cut(s) 533
BbvI GCAGC 4 cut(s) 241, 743, 950, 953
BceAI ACGGC 1 cut(s) 453
BciT130I CCWGG 2 cut(s) 90, 947
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 3 cut(s) 428, 781, 859
BfaI CTAG 4 cut(s) 45, 236, 381, 443
BfmI CTRYAG 1 cut(s) 203
BfrI CTTAAG 1 cut(s) 1157
BfuAI ACCTGC 1 cut(s) 507
BisI GCNGC 5 cut(s) 230, 233, 732, 964, 967
BlsI GCNGC 5 cut(s) 231, 234, 733, 965, 968
BmcAI AGTACT 1 cut(s) 711
Bme1390I CCNGG 2 cut(s) 90, 947
Bme18I GGWCC 2 cut(s) 65, 1153
BmgT120I GGNCC 4 cut(s) 65, 264, 265, 1153
BmiI GGNNCC 4 cut(s) 56, 266, 348, 1154
BmrFI CCNGG 2 cut(s) 90, 947
BmsI GCATC 2 cut(s) 216, 978
BpiI GAAGAC 2 cut(s) 71, 566
BplI GAGNNNNNCTC 4 cut(s) 696, 728, 1095, 1127
BpmI CTGGAG 1 cut(s) 1114
Bpu14I TTCGAA 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 992
BsaJI CCNNGG 2 cut(s) 68, 88
BsaXI ACNNNNNCTCC 4 cut(s) 1101, 1112, 1131, 1142
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 946
Bse1I ACTGG 1 cut(s) 67
Bse8I GATNNNNATC 1 cut(s) 992
BseBI CCWGG 2 cut(s) 90, 947
BseDI CCNNGG 2 cut(s) 68, 88
BseGI GGATG 3 cut(s) 292, 993, 1170
BseJI GATNNNNATC 1 cut(s) 992
BseLI CCNNNNNNNGG 2 cut(s) 74, 946
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 67
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 4 cut(s) 241, 743, 950, 953
BshFI GGCC 2 cut(s) 266, 830
BshNI GGYRCC 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 533
BslFI GGGAC 1 cut(s) 1166
BslI CCNNNNNNNGG 2 cut(s) 74, 946
BsmAI GTCTC 3 cut(s) 428, 781, 859
BsmBI CGTCTC 2 cut(s) 428, 781
BsmFI GGGAC 1 cut(s) 1166
BsnI GGCC 2 cut(s) 266, 830
Bsp119I TTCGAA 1 cut(s) 104
Bsp120I GGGCCC 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 268, 533
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 4 cut(s) 289, 383, 664, 1039
BspACI CCGC 3 cut(s) 232, 491, 649
BspANI GGCC 2 cut(s) 266, 830
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 4 cut(s) 56, 266, 348, 1154
BspMI ACCTGC 1 cut(s) 507
BspPI GGATC 1 cut(s) 672
BspT104I TTCGAA 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 346
BspTI CTTAAG 1 cut(s) 1157
BsrGI TGTACA 1 cut(s) 141
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 68, 88
BssMI GATC 4 cut(s) 289, 383, 664, 1039
BssNAI GTATAC 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 68
Bst1107I GTATAC 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 90, 947
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 891
BstAFI CTTAAG 1 cut(s) 1157
BstAUI TGTACA 1 cut(s) 141
BstBI TTCGAA 1 cut(s) 104
BstC8I GCNNGC 3 cut(s) 365, 688, 1098
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 3 cut(s) 292, 993, 1170
BstKTI GATC 4 cut(s) 292, 386, 667, 1042
BstMAI GTCTC 3 cut(s) 428, 781, 859
BstMBI GATC 4 cut(s) 289, 383, 664, 1039
BstMWI GCNNNNNNNGC 2 cut(s) 238, 499
BstNI CCWGG 2 cut(s) 90, 947
BstNSI RCATGY 2 cut(s) 567, 1009
BstSCI CCNGG 2 cut(s) 88, 945
BstSFI CTRYAG 1 cut(s) 203
BstSLI GKGCMC 1 cut(s) 268
BstV1I GCAGC 4 cut(s) 241, 743, 950, 953
BstV2I GAAGAC 2 cut(s) 71, 566
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
BstZ17I GTATAC 1 cut(s) 276
BsuRI GGCC 2 cut(s) 266, 830
BtsCI GGATG 3 cut(s) 292, 993, 1170
BtsI GCAGTG 1 cut(s) 616
BtsIMutI CAGTG 2 cut(s) 299, 616
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 3 cut(s) 365, 688, 1098
CaiI CAGNNNCTG 3 cut(s) 615, 737, 946
Cfr13I GGNCC 4 cut(s) 65, 264, 265, 1153
CsiI ACCWGGT 1 cut(s) 945
Csp6I GTAC 5 cut(s) 60, 142, 347, 710, 1003
CviAII CATG 4 cut(s) 526, 564, 1006, 1090
CviQI GTAC 5 cut(s) 60, 142, 347, 710, 1003
DdeI CTNAG 1 cut(s) 21
DpnI GATC 4 cut(s) 291, 385, 666, 1041
DpnII GATC 4 cut(s) 289, 383, 664, 1039
Eam1104I CTCTTC 1 cut(s) 891
EarI CTCTTC 1 cut(s) 891
Eco130I CCWWGG 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 268
Eco47I GGWCC 2 cut(s) 65, 1153
Eco57I CTGAAG 1 cut(s) 800
EcoO109I RGGNCCY 2 cut(s) 265, 1153
EcoRII CCWGG 2 cut(s) 88, 945
EcoT14I CCWWGG 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 68
Esp3I CGTCTC 2 cut(s) 428, 781
FaeI CATG 4 cut(s) 529, 567, 1009, 1093
FaqI GGGAC 1 cut(s) 1166
FatI CATG 4 cut(s) 525, 563, 1005, 1089
FauI CCCGC 1 cut(s) 642
FbaI TGATCA 1 cut(s) 289
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 5 cut(s) 230, 233, 732, 964, 967
FokI GGATG 3 cut(s) 299, 1000, 1157
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 5 cut(s) 230, 233, 732, 964, 967
FspBI CTAG 4 cut(s) 45, 236, 381, 443
GluI GCNGC 5 cut(s) 230, 233, 732, 964, 967
GsuI CTGGAG 1 cut(s) 1114
HaeIII GGCC 2 cut(s) 266, 830
Hin1II CATG 4 cut(s) 529, 567, 1009, 1093
HindIII AAGCTT 2 cut(s) 953, 1018
HinfI GANTC 6 cut(s) 84, 215, 848, 867, 1127, 1140
HphI GGTGA 2 cut(s) 378, 526
Hpy166II GTNNAC 3 cut(s) 142, 276, 517
Hpy188I TCNGA 8 cut(s) 214, 471, 592, 600, 639, 780, 1207, 1232
Hpy188III TCNNGA 1 cut(s) 1131
Hpy8I GTNNAC 3 cut(s) 142, 276, 517
HpyAV CCTTC 4 cut(s) 32, 448, 455, 968
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 2 cut(s) 167, 820
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 499
HpyF3I CTNAG 1 cut(s) 21
HpySE526I ACGT 2 cut(s) 167, 820
Hsp92II CATG 4 cut(s) 529, 567, 1009, 1093
KpnI GGTACC 1 cut(s) 350
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 4 cut(s) 289, 383, 664, 1039
LmnI GCTCC 1 cut(s) 317
Lsp1109I GCAGC 4 cut(s) 241, 743, 950, 953
LweI GCATC 2 cut(s) 216, 978
MabI ACCWGGT 1 cut(s) 945
MaeI CTAG 4 cut(s) 45, 236, 381, 443
MaeII ACGT 2 cut(s) 167, 820
MaeIII GTNAC 1 cut(s) 913
MalI GATC 4 cut(s) 291, 385, 666, 1041
MboI GATC 4 cut(s) 289, 383, 664, 1039
MboII GAAGA 8 cut(s) 71, 571, 857, 908, 923, 992, 1021, 1027
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 2 cut(s) 268, 533
MluCI AATT 8 cut(s) 301, 336, 351, 550, 586, 774, 1224, 1266
MlyI GAGTC 2 cut(s) 861, 1121
MnlI CCTC 8 cut(s) 30, 166, 529, 538, 599, 655, 1097, 1127
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 6 cut(s) 339, 408, 585, 903, 951, 1158
MslI CAYNNNNRTG 1 cut(s) 1088
MspA1I CMGCKG 2 cut(s) 208, 232
MspCI CTTAAG 1 cut(s) 1157
MspR9I CCNGG 2 cut(s) 90, 947
MvaI CCWGG 2 cut(s) 90, 947
MwoI GCNNNNNNNGC 2 cut(s) 238, 499
NdeII GATC 4 cut(s) 289, 383, 664, 1039
NlaIII CATG 4 cut(s) 529, 567, 1009, 1093
NlaIV GGNNCC 4 cut(s) 56, 266, 348, 1154
NspI RCATGY 2 cut(s) 567, 1009
NspV TTCGAA 1 cut(s) 104
PciI ACATGT 1 cut(s) 563
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 4 cut(s) 84, 215, 848, 1140
PflMI CCANNNNNTGG 1 cut(s) 946
PkrI GCNGC 5 cut(s) 231, 234, 733, 965, 968
PleI GAGTC 2 cut(s) 861, 1121
PpsI GAGTC 2 cut(s) 861, 1121
PpuMI RGGWCCY 1 cut(s) 1153
PscI ACATGT 1 cut(s) 563
PsiI TTATAA 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 1153
Psp6I CCWGG 2 cut(s) 88, 945
PspGI CCWGG 2 cut(s) 88, 945
PspN4I GGNNCC 4 cut(s) 56, 266, 348, 1154
PspOMI GGGCCC 1 cut(s) 264
PspPI GGNCC 4 cut(s) 65, 264, 265, 1153
PspPPI RGGWCCY 1 cut(s) 1153
PsrI GAACNNNNNNTAC 2 cut(s) 152, 184
PstNI CAGNNNCTG 3 cut(s) 615, 737, 946
PsuI RGATCY 1 cut(s) 664
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 5 cut(s) 61, 143, 348, 711, 1004
RsaNI GTAC 5 cut(s) 60, 142, 347, 710, 1003
RseI CAYNNNNRTG 1 cut(s) 1088
SaqAI TTAA 6 cut(s) 339, 408, 585, 903, 951, 1158
SatI GCNGC 5 cut(s) 230, 233, 732, 964, 967
Sau3AI GATC 4 cut(s) 289, 383, 664, 1039
Sau96I GGNCC 4 cut(s) 65, 264, 265, 1153
ScaI AGTACT 1 cut(s) 711
SchI GAGTC 2 cut(s) 861, 1121
ScrFI CCNGG 2 cut(s) 90, 947
SduI GDGCHC 2 cut(s) 268, 533
SexAI ACCWGGT 1 cut(s) 945
SfaNI GCATC 2 cut(s) 216, 978
SfcI CTRYAG 1 cut(s) 203
SfuI TTCGAA 1 cut(s) 104
SinI GGWCC 2 cut(s) 65, 1153
SmiMI CAYNNNNRTG 1 cut(s) 1088
SmlI CTYRAG 1 cut(s) 1157
SmoI CTYRAG 1 cut(s) 1157
Sse9I AATT 8 cut(s) 301, 336, 351, 550, 586, 774, 1224, 1266
SsiI CCGC 3 cut(s) 232, 491, 649
SspMI CTAG 4 cut(s) 45, 236, 381, 443
StyD4I CCNGG 2 cut(s) 88, 945
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 2 cut(s) 170, 823
TaqI TCGA 4 cut(s) 82, 104, 171, 1038
TasI AATT 8 cut(s) 301, 336, 351, 550, 586, 774, 1224, 1266
TatI WGTACW 3 cut(s) 141, 709, 1002
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 4 cut(s) 84, 215, 848, 1140
Tru1I TTAA 6 cut(s) 339, 408, 585, 903, 951, 1158
Tru9I TTAA 6 cut(s) 339, 408, 585, 903, 951, 1158
TscAI CASTG 2 cut(s) 299, 616
TseI GCWGC 4 cut(s) 229, 731, 963, 966
TspDTI ATGAA 2 cut(s) 924, 1021
TspGWI ACGGA 2 cut(s) 47, 548
TspRI CASTG 2 cut(s) 299, 616
Van91I CCANNNNNTGG 1 cut(s) 946
Vha464I CTTAAG 1 cut(s) 1157
VpaK11BI GGWCC 2 cut(s) 65, 1153
XapI RAATTY 1 cut(s) 1224
XceI RCATGY 2 cut(s) 567, 1009
XcmI CCANNNNNNNNNTGG 1 cut(s) 1018
XmiI GTMKAC 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 4 cut(s) 45, 236, 381, 443
ZrmI AGTACT 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.