Rmu_co8380739.1_g000001

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8380739.1
OG0001151
Physical Location & Seq
Reverse (-)
2 .. 962
961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8380739.1_g000001.1.cds

Sequence Viewer

Length: 961 bp
atgaatagaactatttggtcttctagtccttccagagaagctgaagttcctgttgcacagcttttggaaactggaaacctcgttgttatagacaaggctgtgacaagttccgaaagctatatatggcaaagttttgaatccccatcggacacactgctaccaggaatgaggctgcgattgaacttcaaaacaggcccaaaccaattcttgacatcttggaaaaatgctagtgacccgtctcttggattatatacctataagatcgatcaccttgtgttgcctcagcttgttcttgctcaaggatcaaagaaagaattccgcagtggaccttggaatggtcttcgttttactggtcttcctgtttcaagcaacgaaattttgaaaccaagttatgtttataacacaaatgagttgtattatatctatgaggctaatgacaattctattattacccgattaaagctgactgaaacaggtgagatgcaacggctagtgctgaataaaggaagtactgaatggggtgttatgtatactttgcagaatgatcgatgcgacaattacggggagtgtggtgcaaatagcatatgcaaaattaacagaacacccatttgtgagtgcttacaggggtttgttccaaaatcacagcaagaatgggaggttcttaataggacaagtggttgcaagagagagaccctattggattgccagaagggggaagggtttttgaaatttcaaaatatgaaacttccagacctgttggatttttcagtgaacaacagcatgagcttcaaggaatgtgaggcagagtgtttgaagaattgttcttgtgtagcttatgctaaatcaaatatgagtagtggaggtattggctgtctgatgtggttcggggagcttatagatatgcgtgagttcgttgatgaagttagtgatcaagatttatatattcggatgccagcttcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

320

Amino Acids

36.19

Weight (kDa)

5.14

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 399
AccI GTMKAC 1 cut(s) 530
AciI CCGC 1 cut(s) 319
AclWI GGATC 1 cut(s) 310
AcsI RAATTY 3 cut(s) 314, 375, 728
AcuI CTGAAG 2 cut(s) 63, 942
AdeI CACNNNGTG 1 cut(s) 274
AfaI GTAC 1 cut(s) 511
AfiI CCNNNNNNNGG 3 cut(s) 242, 335, 712
AgsI TTSAA 9 cut(s) 137, 181, 187, 366, 382, 727, 734, 790, 814
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 9 cut(s) 41, 61, 117, 286, 463, 786, 833, 892, 956
AluI AGCT 9 cut(s) 41, 61, 117, 286, 463, 786, 833, 892, 956
Alw26I GTCTC 2 cut(s) 243, 683
AlwI GGATC 1 cut(s) 310
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 172
ApoI RAATTY 3 cut(s) 314, 375, 728
Asp700I GAANNNNTTC 1 cut(s) 314
AspS9I GGNCC 2 cut(s) 194, 326
AsuHPI GGTGA 2 cut(s) 260, 488
AvaII GGWCC 1 cut(s) 326
BbsI GAAGAC 3 cut(s) 12, 332, 347
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 159
BccI CCATC 1 cut(s) 151
BceAI ACGGC 1 cut(s) 503
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BciT130I CCWGG 1 cut(s) 162
BclI TGATCA 1 cut(s) 928
BcoDI GTCTC 2 cut(s) 243, 683
BfaI CTAG 3 cut(s) 24, 228, 491
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
BmcAI AGTACT 1 cut(s) 511
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 194, 326
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 3 cut(s) 471, 539, 939
BpiI GAAGAC 3 cut(s) 12, 332, 347
Bpu10I CCTNAGC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 282
Bsa29I ATCGAT 2 cut(s) 264, 547
BsaI GGTCTC 1 cut(s) 683
BsaJI CCNNGG 1 cut(s) 329
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 335, 712
Bse1I ACTGG 2 cut(s) 76, 355
BseBI CCWGG 1 cut(s) 162
BseCI ATCGAT 2 cut(s) 264, 547
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 1 cut(s) 954
BseLI CCNNNNNNNGG 3 cut(s) 242, 335, 712
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 2 cut(s) 76, 355
BseXI GCAGC 1 cut(s) 159
BshFI GGCC 1 cut(s) 195
BshVI ATCGAT 2 cut(s) 264, 547
BslI CCNNNNNNNGG 3 cut(s) 242, 335, 712
BsmAI GTCTC 2 cut(s) 243, 683
BsmBI CGTCTC 1 cut(s) 243
BsnI GGCC 1 cut(s) 195
Bso31I GGTCTC 1 cut(s) 683
Bsp143I GATC 5 cut(s) 261, 265, 302, 544, 928
BspACI CCGC 1 cut(s) 319
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 295
BspDI ATCGAT 2 cut(s) 264, 547
BspPI GGATC 1 cut(s) 310
BspTNI GGTCTC 1 cut(s) 683
BsrI ACTGG 2 cut(s) 76, 355
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 5 cut(s) 261, 265, 302, 544, 928
BssNAI GTATAC 1 cut(s) 531
BssT1I CCWWGG 1 cut(s) 329
Bst1107I GTATAC 1 cut(s) 531
Bst2UI CCWGG 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 954
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 954
BstKTI GATC 5 cut(s) 264, 268, 305, 547, 931
BstMAI GTCTC 2 cut(s) 243, 683
BstMBI GATC 5 cut(s) 261, 265, 302, 544, 928
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 159
BstV2I GAAGAC 3 cut(s) 12, 332, 347
BstZ17I GTATAC 1 cut(s) 531
Bsu15I ATCGAT 2 cut(s) 264, 547
BsuRI GGCC 1 cut(s) 195
BsuTUI ATCGAT 2 cut(s) 264, 547
BtsCI GGATG 1 cut(s) 954
BtsI GCAGTG 2 cut(s) 152, 328
BtsIMutI CAGTG 3 cut(s) 152, 328, 774
Cac8I GCNNGC 1 cut(s) 954
Cfr13I GGNCC 2 cut(s) 194, 326
ClaI ATCGAT 2 cut(s) 264, 547
Csp6I GTAC 1 cut(s) 510
CviAII CATG 1 cut(s) 781
CviQI GTAC 1 cut(s) 510
DdeI CTNAG 1 cut(s) 282
DpnI GATC 5 cut(s) 263, 267, 304, 546, 930
DpnII GATC 5 cut(s) 261, 265, 302, 544, 928
DraIII CACNNNGTG 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 329
Eco31I GGTCTC 1 cut(s) 683
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 2 cut(s) 63, 942
EcoRI GAATTC 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 329
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 1 cut(s) 784
FatI CATG 1 cut(s) 780
FauNDI CATATG 1 cut(s) 584
FbaI TGATCA 1 cut(s) 928
FblI GTMKAC 1 cut(s) 530
Fnu4HI GCNGC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 173
FspBI CTAG 3 cut(s) 24, 228, 491
GluI GCNGC 1 cut(s) 173
HaeIII GGCC 1 cut(s) 195
Hin1II CATG 1 cut(s) 784
HinfI GANTC 1 cut(s) 137
HphI GGTGA 2 cut(s) 260, 488
Hpy166II GTNNAC 3 cut(s) 326, 531, 772
Hpy188I TCNGA 4 cut(s) 112, 148, 876, 948
Hpy188III TCNNGA 4 cut(s) 33, 208, 749, 932
Hpy8I GTNNAC 3 cut(s) 326, 531, 772
HpyAV CCTTC 3 cut(s) 39, 703, 710
HpyCH4V TGCA 6 cut(s) 56, 484, 538, 575, 588, 681
HpyF3I CTNAG 1 cut(s) 282
Hsp92II CATG 1 cut(s) 784
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 5 cut(s) 261, 265, 302, 544, 928
LmnI GCTCC 1 cut(s) 889
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 3 cut(s) 471, 539, 939
MaeI CTAG 3 cut(s) 24, 228, 491
MaeIII GTNAC 2 cut(s) 100, 230
MalI GATC 5 cut(s) 263, 267, 304, 546, 930
MboI GATC 5 cut(s) 261, 265, 302, 544, 928
MboII GAAGA 4 cut(s) 12, 332, 347, 826
MluCI AATT 8 cut(s) 203, 314, 375, 439, 556, 591, 728, 817
MmeI TCCRAC 1 cut(s) 738
MnlI CCTC 7 cut(s) 89, 162, 291, 421, 649, 793, 854
MroXI GAANNNNTTC 1 cut(s) 314
MseI TTAA 3 cut(s) 458, 594, 663
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
NdeI CATATG 1 cut(s) 584
NdeII GATC 5 cut(s) 261, 265, 302, 544, 928
NlaIII CATG 1 cut(s) 784
NmuCI GTSAC 2 cut(s) 100, 230
PdmI GAANNNNTTC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 1 cut(s) 174
PsiI TTATAA 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspPI GGNCC 2 cut(s) 194, 326
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
SaqAI TTAA 3 cut(s) 458, 594, 663
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 5 cut(s) 261, 265, 302, 544, 928
Sau96I GGNCC 2 cut(s) 194, 326
ScaI AGTACT 1 cut(s) 511
ScrFI CCNGG 1 cut(s) 162
SfaNI GCATC 3 cut(s) 471, 539, 939
SinI GGWCC 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 8 cut(s) 203, 314, 375, 439, 556, 591, 728, 817
SsiI CCGC 1 cut(s) 319
SspMI CTAG 3 cut(s) 24, 228, 491
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 329
TaqI TCGA 2 cut(s) 264, 547
TasI AATT 8 cut(s) 203, 314, 375, 439, 556, 591, 728, 817
TatI WGTACW 1 cut(s) 509
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 3 cut(s) 458, 594, 663
Tru9I TTAA 3 cut(s) 458, 594, 663
TscAI CASTG 3 cut(s) 159, 328, 774
TseFI GTSAC 2 cut(s) 100, 230
TseI GCWGC 1 cut(s) 172
Tsp45I GTSAC 2 cut(s) 100, 230
TspDTI ATGAA 3 cut(s) 17, 755, 933
TspRI CASTG 3 cut(s) 159, 328, 774
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 3 cut(s) 314, 375, 728
XmiI GTMKAC 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 314
XspI CTAG 3 cut(s) 24, 228, 491
ZrmI AGTACT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.