Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004068.1

Orthogroup ID

OG0001151

Physical Location & Seq

Genomic Coordinates Forward (+)

14087 .. 17714

Gene Structure 3628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004068.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2448 bp

atgaagggcctcatcttcatcttcatctctctgttcctatttttagccttgaatttctccattgcagctgataccatatctccatcacaatccatcaccggctcgaataccctggtttcttccaaccagagatttgtgctaggactcttctccccacccaattctagagcatggtatttaggactatggtacaagaaatttccagatgttgttgtatggattgcaaacagagaaaacccacttccaggttcgaatggagccttgacattatcagaaaaaggcaccctcatcctttcagaccaaatgaacaagacaatttggtcctcaaattcttccagagtagccgaaaacccagttgcgcagcttttggtgactggaaatcttgttgtcagagaccgggcgtctccaacagcaacagcagagtccgaaagctatgtttttcaaagctttgattacccatcaaacacgcttttaccagatatgaaggtggggtgggacttcagaactggccaagaccatttcttgactagttggaaaactgctagcgatccctcccctggagaatatacctataggattgaaaaccttgggttgcctcagcttgttgtcgctcaaggatcaaagaaagtgttcaggacagggccttggaatggtcttcgatttacaggtactcctgtttcggttgttacagcaacatcatttttggtaccaatctttgtctacaataccaaggagctgtactactcatatgaggttactgatgattctattctgacaagagtgacgctgactgagtcgggtttggctcagcggctagtgatgaatgaagggagcagtgaatgggctgttatgtacactctgcagaacgatcagtgtgatgattatggtcagtgtgggccaaatggcatttgcaagatttacaaatcacccatttgtgaatgcttgcaggggtttgttcccaaatctccaaaggaatgggagtttcttaactggacaaccgggtgcacgaggaggacagcactgcattgtgagaaaggggaaggatttgtgaaagttaataatgtgaaactgccggacttgttggattttcgggtgaacaaaaccatgctccgcggagaggaatgtgaggcagagtgtttgaggagctgctcctgtatggcttatgccaattcgaacataaccaatggaggcaaaggatgtcttatgtggtttggcaagctgattgatatgcgggagatcgctgaagatggtgaccagatatatattcggatgccagcttccgaactaggtgataccagccagaaacataaaagagtattgctcgtctcggtcatatcatcagcaggttttgtgcttctttttctgggtttctcatgctgctatatttatgtgaagaagagagaaaagaaaatgggctcaagaactagtgaggagggcttggagttgccactgtttgattatggtagaattgcaacctccaccaatgacttctccgggacaaacaaactgggagagggaggttttggtccagtttacaaggccatgttatcacaagaagagtttgtagcagtaaagagactctcgaaagattctgggcaaggtgttgaagagtttaagaacgaagttacaatgatggctaatcttcaacactggaatcttgttaaacttctgggctgctgcattgaaggagaagaaaggatgctaatctatgagtacatgcccaacaaaagcttggactgctttattttcgatgaaaacaagaagttgttgctgaagtggcaaaagcgatttgacataatagtaggaattgctagaggacttctgtacctacaccaagactccaggctaagaatcattcatagggaccttaagagtagcaacatcttactcgacgatgagctgaaccccaaaatttctgactttggtatagcaagaattttcggacgcaatcagaatgaagctaaaaccaaacgagtaattggcacatacggatatatgtccccggagtatgcaattgatggaaaattttcagtgaaatctgatgtcttcagctttggagtgcttttgttagagatagtaagcggcagaaagaacagagggtttcatcatcctgatcaccatcacaatcttttgggacatgcatggttattgtggaaacaaaacaagggtttggagctaatggatatatgcctggaggactcatatgttgagtttgaattgctaaggtgcattcaagtgggtctgttgtgtgttcaaaagctgcctgaagacagaccagtaatgtcatcggtggttcttatgttaagcaatgagggagcaactttgcctcagccaaagaagcctggattctttatagaaagaggttccttggactttgatagcttaagagacccaggaaaaagcaacacagggaacacaattaccattaccacagtggaagctagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

815

Amino Acids

91.67

Weight (kDa)

6.87

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21260 FvH4_3g21270 FvH4_3g21270 FvH4_3g21270 FvH4_3g21270 FvH4_3g21270 FvH4_3g21270 FvH4_3g21270 FvH4_3g21270 FvH4_3g21271 FvH4_3g32520
malus_domestica	MD03G1186000.v1.1 MD03G1186100.v1.1 MD11G1233600.v1.1
prunus_persica	Prupe.4G193200_v2.0.a1 Prupe.4G193300_v2.0.a1 Prupe.4G193300_v2.0.a1 Prupe.4G193400_v2.0.a1 Prupe.4G193600_v2.0.a1 Prupe.4G193600_v2.0.a1 Prupe.4G193600_v2.0.a1
pyrus_communis	pycom03g16570 pycom11g20590
rosa_chinensis	RchiOBHm_Chr5g0036211 RchiOBHm_Chr5g0036331 RchiOBHm_Chr5g0036341 RchiOBHm_Chr5g0036351 RchiOBHm_Chr5g0036361 RchiOBHm_Chr5g0059581
rosa_laevigata	RLG00000033688 RLG00000033689 RLG00000033691 RLG00000035304
rosa_multiflora	Rmu_co7984260.1_g000001 Rmu_co8380739.1_g000001 Rmu_sc0000712.1_g000014 Rmu_sc0000712.1_g000020 Rmu_sc0000712.1_g000021 Rmu_sc0000712.1_g000022 Rmu_sc0004068.1_g000004 Rmu_sc0006059.1_g000090 Rmu_sc0006059.1_g000091
rosa_roxburghii	Rroxscaffold_1G00021030 Rroxscaffold_1G00044450 Rroxscaffold_1G00044460
rosa_rugosa	Rorug05G0323300
rosa_samantha	Rh5AG388000 Rh5BG249300 Rh5BG400000 Rh5CG280800 Rh5CG280900 Rh5CG281000 Rh5CG424300 Rh5DG416200
rosa_wichuraiana	Rw5G022840 Rw5G022850 Rw5G022860 Rw5G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	319
Acc16I	TGCGCA	1 cut(s)	360
Acc36I	ACCTGC	1 cut(s)	1334
Acc65I	GGTACC	1 cut(s)	706
AccB1I	GGYRCC	2 cut(s)	281, 706
AccI	GTMKAC	1 cut(s)	720
AccII	CGCG	1 cut(s)	1113
AciI	CCGC	5 cut(s)	811, 1111, 1113, 1231, 2082
AclWI	GGATC	2 cut(s)	542, 625
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	6 cut(s)	52, 197, 328, 1911, 1935, 2024
AcuI	CTGAAG	5 cut(s)	484, 1263, 1793, 2032, 2286
AcyI	GRCGYC	1 cut(s)	401
AfaI	GTAC	7 cut(s)	191, 670, 708, 740, 854, 1715, 1826
AfiI	CCNNNNNNNGG	4 cut(s)	245, 557, 650, 1117
AflII	CTTAAG	2 cut(s)	1868, 2383
AgsI	TTSAA	9 cut(s)	52, 443, 581, 1607, 1646, 1685, 2216, 2234, 2255
AhdI	GACNNNNNGTC	1 cut(s)	400
AhlI	ACTAGT	2 cut(s)	527, 1424
AjnI	CCWGG	7 cut(s)	111, 244, 556, 1841, 2190, 2341, 2392
Alw21I	GWGCWC	1 cut(s)	1007
Alw26I	GTCTC	5 cut(s)	387, 408, 1330, 1570, 2382
Alw44I	GTGCAC	1 cut(s)	1003
AlwI	GGATC	2 cut(s)	542, 625
AoxI	GGCC	5 cut(s)	7, 508, 641, 896, 1539
ApaLI	GTGCAC	1 cut(s)	1003
ApeKI	GCWGC	7 cut(s)	65, 361, 1146, 1377, 1674, 1677, 2260
ApoI	RAATTY	6 cut(s)	52, 197, 328, 1911, 1935, 2024
Asp700I	GAANNNNTTC	2 cut(s)	629, 2026
Asp718I	GGTACC	1 cut(s)	706
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	6 cut(s)	7, 321, 641, 896, 1526, 1864
AsuC2I	CCSGG	4 cut(s)	398, 1000, 1495, 2003
AsuHPI	GGTGA	7 cut(s)	88, 382, 918, 1105, 1262, 1301, 2108
AsuII	TTCGAA	2 cut(s)	251, 1172
AsuNHI	GCTAGC	1 cut(s)	542
AvaII	GGWCC	3 cut(s)	321, 1526, 1864
BaeGI	GKGCMC	1 cut(s)	1007
BaeI	ACNNNNGTAYC	4 cut(s)	660, 693, 1808, 1841
BalI	TGGCCA	1 cut(s)	510
BanI	GGYRCC	2 cut(s)	281, 706
BanII	GRGCYC	1 cut(s)	1418
BauI	CACGAG	1 cut(s)	1006
BbsI	GAAGAC	3 cut(s)	647, 2038, 2274
Bbv12I	GWGCWC	1 cut(s)	1007
BbvCI	CCTCAGC	2 cut(s)	597, 2328
BbvI	GCAGC	7 cut(s)	77, 373, 1133, 1364, 1661, 1664, 2247
BccI	CCATC	7 cut(s)	91, 101, 466, 1241, 1627, 2012, 2127
BciT130I	CCWGG	7 cut(s)	113, 246, 558, 1843, 2192, 2343, 2394
BclI	TGATCA	1 cut(s)	2113
BcnI	CCSGG	4 cut(s)	398, 1000, 1495, 2003
BcoDI	GTCTC	5 cut(s)	387, 408, 1330, 1570, 2382
BcuI	ACTAGT	2 cut(s)	527, 1424
BfaI	CTAG	9 cut(s)	140, 165, 528, 543, 815, 1286, 1425, 1812, 2442
BfmI	CTRYAG	2 cut(s)	571, 860
BfrI	CTTAAG	2 cut(s)	1868, 2383
BfuAI	ACCTGC	1 cut(s)	1334
BisI	GCNGC	9 cut(s)	66, 362, 812, 1147, 1378, 1675, 1678, 2083, 2261
BlpI	GCTNAGC	1 cut(s)	807
BlsI	GCNGC	9 cut(s)	67, 363, 813, 1148, 1379, 1676, 1679, 2084, 2262
Bme18I	GGWCC	3 cut(s)	321, 1526, 1864
BmeRI	GACNNNNNGTC	1 cut(s)	400
BmgT120I	GGNCC	6 cut(s)	7, 321, 641, 896, 1526, 1864
BmiI	GGNNCC	5 cut(s)	259, 283, 708, 1865, 2365
BmrI	ACTGGG	2 cut(s)	347, 1517
BmsI	GCATC	2 cut(s)	1260, 1689
BmtI	GCTAGC	1 cut(s)	546
BmuI	ACTGGG	2 cut(s)	347, 1517
BpiI	GAAGAC	3 cut(s)	647, 2038, 2274
BplI	GAGNNNNNCTC	2 cut(s)	1305, 1337
BpmI	CTGGAG	3 cut(s)	579, 1825, 2213
Bpu10I	CCTNAGC	3 cut(s)	597, 2222, 2328
Bpu1102I	GCTNAGC	1 cut(s)	807
Bpu14I	TTCGAA	2 cut(s)	251, 1172
BpuEI	CTTGAG	2 cut(s)	597, 1402
BpuMI	CCSGG	4 cut(s)	398, 1000, 1495, 2003
BsaBI	GATNNNNATC	2 cut(s)	1703, 2118
BsaHI	GRCGYC	1 cut(s)	401
BsaI	GGTCTC	2 cut(s)	387, 2382
BsaJI	CCNNGG	9 cut(s)	111, 556, 586, 644, 729, 1111, 2001, 2367, 2392
BsaXI	ACNNNNNCTCC	6 cut(s)	64, 94, 655, 685, 1823, 1853
Bsc4I	CCNNNNNNNGG	4 cut(s)	245, 557, 650, 1117
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	8 cut(s)	353, 379, 511, 995, 1512, 1529, 1655, 2276
Bse3DI	GCAATG	2 cut(s)	60, 2314
Bse8I	GATNNNNATC	2 cut(s)	1703, 2118
BseBI	CCWGG	7 cut(s)	113, 246, 558, 1843, 2192, 2343, 2394
BseDI	CCNNGG	9 cut(s)	111, 556, 586, 644, 729, 1111, 2001, 2367, 2392
BseGI	GGATG	5 cut(s)	288, 1202, 1275, 1704, 2107
BseJI	GATNNNNATC	2 cut(s)	1703, 2118
BseLI	CCNNNNNNNGG	4 cut(s)	245, 557, 650, 1117
BseMI	GCAATG	2 cut(s)	60, 2314
BseMII	CTCAG	4 cut(s)	611, 783, 821, 2342
BseNI	ACTGG	8 cut(s)	353, 379, 511, 995, 1512, 1529, 1655, 2276
BseRI	GAGGAG	3 cut(s)	1024, 1156, 1445
BseSI	GKGCMC	1 cut(s)	1007
BseXI	GCAGC	7 cut(s)	77, 373, 1133, 1364, 1661, 1664, 2247
Bsh1236I	CGCG	1 cut(s)	1113
BshFI	GGCC	5 cut(s)	9, 510, 643, 898, 1541
BshNI	GGYRCC	2 cut(s)	281, 706
BsiHKAI	GWGCWC	1 cut(s)	1007
BsiSI	CCGG	6 cut(s)	99, 397, 999, 1073, 1494, 2003
BslFI	GGGAC	5 cut(s)	509, 1510, 1877, 1984, 2148
BslI	CCNNNNNNNGG	4 cut(s)	245, 557, 650, 1117
BsmAI	GTCTC	5 cut(s)	387, 408, 1330, 1570, 2382
BsmBI	CGTCTC	2 cut(s)	408, 1330
BsmFI	GGGAC	5 cut(s)	509, 1510, 1877, 1984, 2148
BsmI	GAATGC	2 cut(s)	944, 2229
BsnI	GGCC	5 cut(s)	9, 510, 643, 898, 1541
Bso31I	GGTCTC	2 cut(s)	387, 2382
Bsp119I	TTCGAA	2 cut(s)	251, 1172
Bsp1286I	GDGCHC	2 cut(s)	1007, 1418
Bsp1407I	TGTACA	1 cut(s)	852
Bsp143I	GATC	5 cut(s)	547, 617, 868, 1236, 2113
Bsp1720I	GCTNAGC	1 cut(s)	807
BspACI	CCGC	5 cut(s)	811, 1111, 1113, 1231, 2082
BspANI	GGCC	5 cut(s)	9, 510, 643, 898, 1541
BspCNI	CTCAG	4 cut(s)	610, 784, 820, 2341
BspFNI	CGCG	1 cut(s)	1113
BspLI	GGNNCC	5 cut(s)	259, 283, 708, 1865, 2365
BspMAI	CTGCAG	1 cut(s)	864
BspMI	ACCTGC	1 cut(s)	1334
BspOI	GCTAGC	1 cut(s)	546
BspPI	GGATC	2 cut(s)	542, 625
BspT104I	TTCGAA	2 cut(s)	251, 1172
BspT107I	GGYRCC	2 cut(s)	281, 706
BspTI	CTTAAG	2 cut(s)	1868, 2383
BspTNI	GGTCTC	2 cut(s)	387, 2382
BsrDI	GCAATG	2 cut(s)	60, 2314
BsrFI	RCCGGY	1 cut(s)	98
BsrGI	TGTACA	1 cut(s)	852
BsrI	ACTGG	8 cut(s)	353, 379, 511, 995, 1512, 1529, 1655, 2276
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	9 cut(s)	111, 556, 586, 644, 729, 1111, 2001, 2367, 2392
BssMI	GATC	5 cut(s)	547, 617, 868, 1236, 2113
BssNI	GRCGYC	1 cut(s)	401
BssSI	CACGAG	1 cut(s)	1006
BssT1I	CCWWGG	4 cut(s)	586, 644, 729, 2367
Bst2BI	CACGAG	1 cut(s)	1006
Bst2UI	CCWGG	7 cut(s)	113, 246, 558, 1843, 2192, 2343, 2394
Bst4CI	ACNGT	2 cut(s)	1452, 2434
Bst6I	CTCTTC	4 cut(s)	152, 1391, 1551, 1602
BstACI	GRCGYC	1 cut(s)	401
BstAFI	CTTAAG	2 cut(s)	1868, 2383
BstAUI	TGTACA	1 cut(s)	852
BstBI	TTCGAA	2 cut(s)	251, 1172
BstC8I	GCNNGC	4 cut(s)	544, 944, 1217, 1275
BstDEI	CTNAG	6 cut(s)	597, 792, 807, 1847, 2222, 2328
BstDSI	CCRYGG	1 cut(s)	1111
BstEII	GGTNACC	1 cut(s)	1250
BstF5I	GGATG	5 cut(s)	288, 1202, 1275, 1704, 2107
BstFNI	CGCG	1 cut(s)	1113
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	5 cut(s)	550, 620, 871, 1239, 2116
BstMAI	GTCTC	5 cut(s)	387, 408, 1330, 1570, 2382
BstMBI	GATC	5 cut(s)	547, 617, 868, 1236, 2113
BstMWI	GCNNNNNNNGC	3 cut(s)	1737, 1777, 2338
BstNI	CCWGG	7 cut(s)	113, 246, 558, 1843, 2192, 2343, 2394
BstNSI	RCATGY	2 cut(s)	1720, 2141
BstPI	GGTNACC	1 cut(s)	1250
BstSFI	CTRYAG	2 cut(s)	571, 860
BstSLI	GKGCMC	1 cut(s)	1007
BstUI	CGCG	1 cut(s)	1113
BstV1I	GCAGC	7 cut(s)	77, 373, 1133, 1364, 1661, 1664, 2247
BstV2I	GAAGAC	3 cut(s)	647, 2038, 2274
BstXI	CCANNNNNNTGG	1 cut(s)	975
BsuRI	GGCC	5 cut(s)	9, 510, 643, 898, 1541
BtgI	CCRYGG	1 cut(s)	1111
BtsCI	GGATG	5 cut(s)	288, 1202, 1275, 1704, 2107
BtsI	GCAGTG	2 cut(s)	841, 1019
BtsIMutI	CAGTG	8 cut(s)	841, 878, 896, 1019, 1448, 1648, 2037, 2439
BveI	ACCTGC	1 cut(s)	1334
Cac8I	GCNNGC	4 cut(s)	544, 944, 1217, 1275
CfoI	GCGC	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	6 cut(s)	7, 321, 641, 896, 1526, 1864
Cfr42I	CCGCGG	1 cut(s)	1114
CseI	GACGC	3 cut(s)	390, 793, 1953
Csp6I	GTAC	7 cut(s)	190, 669, 707, 739, 853, 1714, 1825
CviAII	CATG	7 cut(s)	171, 1105, 1374, 1543, 1717, 2138, 2142
CviQI	GTAC	7 cut(s)	190, 669, 707, 739, 853, 1714, 1825
DdeI	CTNAG	6 cut(s)	597, 792, 807, 1847, 2222, 2328
DpnI	GATC	5 cut(s)	549, 619, 870, 1238, 2115
DpnII	GATC	5 cut(s)	547, 617, 868, 1236, 2113
DrdI	GACNNNNNNGTC	1 cut(s)	319
DriI	GACNNNNNGTC	1 cut(s)	400
DseDI	GACNNNNNNGTC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	508
Eam1104I	CTCTTC	4 cut(s)	152, 1391, 1551, 1602
Eam1105I	GACNNNNNGTC	1 cut(s)	400
EarI	CTCTTC	4 cut(s)	152, 1391, 1551, 1602
Eco130I	CCWWGG	4 cut(s)	586, 644, 729, 2367
Eco24I	GRGCYC	1 cut(s)	1418
Eco31I	GGTCTC	2 cut(s)	387, 2382
Eco47I	GGWCC	3 cut(s)	321, 1526, 1864
Eco57I	CTGAAG	5 cut(s)	484, 1263, 1793, 2032, 2286
Eco91I	GGTNACC	1 cut(s)	1250
EcoO109I	RGGNCCY	3 cut(s)	7, 641, 1864
EcoO65I	GGTNACC	1 cut(s)	1250
EcoRII	CCWGG	7 cut(s)	111, 244, 556, 1841, 2190, 2341, 2392
EcoT14I	CCWWGG	4 cut(s)	586, 644, 729, 2367
EcoT22I	ATGCAT	1 cut(s)	2143
EcoT38I	GRGCYC	1 cut(s)	1418
ErhI	CCWWGG	4 cut(s)	586, 644, 729, 2367
Esp3I	CGTCTC	2 cut(s)	408, 1330
FaeI	CATG	7 cut(s)	174, 1108, 1377, 1546, 1720, 2141, 2145
FalI	AAGNNNNNCTT	2 cut(s)	1185, 1217
FaqI	GGGAC	5 cut(s)	509, 1510, 1877, 1984, 2148
FatI	CATG	7 cut(s)	170, 1104, 1373, 1542, 1716, 2137, 2141
FauI	CCCGC	1 cut(s)	1224
FauNDI	CATATG	2 cut(s)	748, 2203
FbaI	TGATCA	1 cut(s)	2113
FblI	GTMKAC	1 cut(s)	720
Fnu4HI	GCNGC	9 cut(s)	66, 362, 812, 1147, 1378, 1675, 1678, 2083, 2261
FokI	GGATG	5 cut(s)	275, 1209, 1282, 1711, 2094
FriOI	GRGCYC	1 cut(s)	1418
Fsp4HI	GCNGC	9 cut(s)	66, 362, 812, 1147, 1378, 1675, 1678, 2083, 2261
FspBI	CTAG	9 cut(s)	140, 165, 528, 543, 815, 1286, 1425, 1812, 2442
FspI	TGCGCA	1 cut(s)	360
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	9 cut(s)	66, 362, 812, 1147, 1378, 1675, 1678, 2083, 2261
GsuI	CTGGAG	3 cut(s)	579, 1825, 2213
HaeIII	GGCC	5 cut(s)	9, 510, 643, 898, 1541
HapII	CCGG	6 cut(s)	99, 397, 999, 1073, 1494, 2003
HgaI	GACGC	3 cut(s)	390, 793, 1953
HhaI	GCGC	1 cut(s)	361
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	7 cut(s)	174, 1108, 1377, 1546, 1720, 2141, 2145
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HindIII	AAGCTT	2 cut(s)	445, 1729
HpaII	CCGG	6 cut(s)	99, 397, 999, 1073, 1494, 2003
HphI	GGTGA	7 cut(s)	88, 382, 918, 1105, 1262, 1301, 2108
Hpy166II	GTNNAC	5 cut(s)	721, 855, 1005, 1096, 1534
Hpy188III	TCNNGA	8 cut(s)	165, 203, 336, 523, 634, 1419, 1582, 2111
Hpy8I	GTNNAC	5 cut(s)	721, 855, 1005, 1096, 1534
Hpy99I	CGWCG	1 cut(s)	1895
HpyAV	CCTTC	4 cut(s)	478, 821, 1034, 1679
HpyCH4III	ACNGT	2 cut(s)	1452, 2434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1737, 1777, 2338
HpyF3I	CTNAG	6 cut(s)	597, 792, 807, 1847, 2222, 2328
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	7 cut(s)	174, 1108, 1377, 1546, 1720, 2141, 2145
HspAI	GCGC	1 cut(s)	359
KpnI	GGTACC	1 cut(s)	710
Ksp22I	TGATCA	1 cut(s)	2113
KspI	CCGCGG	1 cut(s)	1114
Kzo9I	GATC	5 cut(s)	547, 617, 868, 1236, 2113
LmnI	GCTCC	8 cut(s)	257, 733, 831, 1113, 1143, 1154, 2173, 2315
Lsp1109I	GCAGC	7 cut(s)	77, 373, 1133, 1364, 1661, 1664, 2247
LweI	GCATC	2 cut(s)	1260, 1689
MaeI	CTAG	9 cut(s)	140, 165, 528, 543, 815, 1286, 1425, 1812, 2442
MaeIII	GTNAC	6 cut(s)	370, 685, 754, 781, 1250, 1624
MalI	GATC	5 cut(s)	549, 619, 870, 1238, 2115
MboI	GATC	5 cut(s)	547, 617, 868, 1236, 2113
MfeI	CAATTG	1 cut(s)	2013
MhlI	GDGCHC	2 cut(s)	1007, 1418
MlsI	TGGCCA	1 cut(s)	510
MluNI	TGGCCA	1 cut(s)	510
MlyI	GAGTC	6 cut(s)	138, 431, 803, 1572, 1832, 2192
MmeI	TCCRAC	4 cut(s)	147, 431, 512, 1062
Mox20I	TGGCCA	1 cut(s)	510
Mph1103I	ATGCAT	1 cut(s)	2143
MroXI	GAANNNNTTC	2 cut(s)	629, 2026
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	7 cut(s)	987, 1056, 1614, 1662, 1869, 2303, 2384
MslI	CAYNNNNRTG	1 cut(s)	2234
Msp20I	TGGCCA	1 cut(s)	510
MspA1I	CMGCKG	3 cut(s)	68, 811, 1113
MspCI	CTTAAG	2 cut(s)	1868, 2383
MspI	CCGG	6 cut(s)	99, 397, 999, 1073, 1494, 2003
MunI	CAATTG	1 cut(s)	2013
Mva1269I	GAATGC	2 cut(s)	944, 2229
MvaI	CCWGG	7 cut(s)	113, 246, 558, 1843, 2192, 2343, 2394
MvnI	CGCG	1 cut(s)	1113
MwoI	GCNNNNNNNGC	3 cut(s)	1737, 1777, 2338
NciI	CCSGG	4 cut(s)	398, 1000, 1495, 2003
NdeI	CATATG	2 cut(s)	748, 2203
NdeII	GATC	5 cut(s)	547, 617, 868, 1236, 2113
NheI	GCTAGC	1 cut(s)	542
NlaIII	CATG	7 cut(s)	174, 1108, 1377, 1546, 1720, 2141, 2145
NlaIV	GGNNCC	5 cut(s)	259, 283, 708, 1865, 2365
NmuCI	GTSAC	3 cut(s)	370, 781, 1250
NsbI	TGCGCA	1 cut(s)	360
NsiI	ATGCAT	1 cut(s)	2143
NspI	RCATGY	2 cut(s)	1720, 2141
NspV	TTCGAA	2 cut(s)	251, 1172
PctI	GAATGC	2 cut(s)	944, 2229
PdmI	GAANNNNTTC	2 cut(s)	629, 2026
PfeI	GAWTC	5 cut(s)	764, 1589, 1654, 1851, 2346
PflFI	GACNNNGTC	1 cut(s)	793
PfoI	TCCNGGA	1 cut(s)	1493
PkrI	GCNGC	9 cut(s)	67, 363, 813, 1148, 1379, 1676, 1679, 2084, 2262
PleI	GAGTC	6 cut(s)	138, 430, 802, 1572, 1832, 2192
PpsI	GAGTC	6 cut(s)	138, 430, 802, 1572, 1832, 2192
PpuMI	RGGWCCY	1 cut(s)	1864
Psp5II	RGGWCCY	1 cut(s)	1864
Psp6I	CCWGG	7 cut(s)	111, 244, 556, 1841, 2190, 2341, 2392
PspEI	GGTNACC	1 cut(s)	1250
PspGI	CCWGG	7 cut(s)	111, 244, 556, 1841, 2190, 2341, 2392
PspN4I	GGNNCC	5 cut(s)	259, 283, 708, 1865, 2365
PspPI	GGNCC	6 cut(s)	7, 321, 641, 896, 1526, 1864
PspPPI	RGGWCCY	1 cut(s)	1864
PstI	CTGCAG	1 cut(s)	864
PsyI	GACNNNGTC	1 cut(s)	793
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	7 cut(s)	191, 670, 708, 740, 854, 1715, 1826
RsaNI	GTAC	7 cut(s)	190, 669, 707, 739, 853, 1714, 1825
RseI	CAYNNNNRTG	1 cut(s)	2234
SacII	CCGCGG	1 cut(s)	1114
SaqAI	TTAA	7 cut(s)	987, 1056, 1614, 1662, 1869, 2303, 2384
SatI	GCNGC	9 cut(s)	66, 362, 812, 1147, 1378, 1675, 1678, 2083, 2261
Sau3AI	GATC	5 cut(s)	547, 617, 868, 1236, 2113
Sau96I	GGNCC	6 cut(s)	7, 321, 641, 896, 1526, 1864
SchI	GAGTC	6 cut(s)	138, 431, 803, 1572, 1832, 2192
SduI	GDGCHC	2 cut(s)	1007, 1418
SfaNI	GCATC	2 cut(s)	1260, 1689
SfcI	CTRYAG	2 cut(s)	571, 860
Sfr303I	CCGCGG	1 cut(s)	1114
SfuI	TTCGAA	2 cut(s)	251, 1172
SgrBI	CCGCGG	1 cut(s)	1114
SinI	GGWCC	3 cut(s)	321, 1526, 1864
SmiMI	CAYNNNNRTG	1 cut(s)	2234
SmlI	CTYRAG	4 cut(s)	612, 1417, 1868, 2383
SmoI	CTYRAG	4 cut(s)	612, 1417, 1868, 2383
SpeI	ACTAGT	2 cut(s)	527, 1424
SsiI	CCGC	5 cut(s)	811, 1111, 1113, 1231, 2082
SspMI	CTAG	9 cut(s)	140, 165, 528, 543, 815, 1286, 1425, 1812, 2442
StyI	CCWWGG	4 cut(s)	586, 644, 729, 2367
TaaI	ACNGT	2 cut(s)	1452, 2434
TaqI	TCGA	7 cut(s)	104, 251, 658, 1172, 1583, 1749, 1890
TaqII	GACCGA	1 cut(s)	1318
TatI	WGTACW	3 cut(s)	738, 852, 1713
TauI	GCSGC	2 cut(s)	814, 2085
TfiI	GAWTC	5 cut(s)	764, 1589, 1654, 1851, 2346
Tru1I	TTAA	7 cut(s)	987, 1056, 1614, 1662, 1869, 2303, 2384
Tru9I	TTAA	7 cut(s)	987, 1056, 1614, 1662, 1869, 2303, 2384
TscAI	CASTG	8 cut(s)	841, 878, 896, 1026, 1455, 1655, 2037, 2439
TseFI	GTSAC	3 cut(s)	370, 781, 1250
TseI	GCWGC	7 cut(s)	65, 361, 1146, 1377, 1674, 1677, 2260
Tsp45I	GTSAC	3 cut(s)	370, 781, 1250
TspGWI	ACGGA	1 cut(s)	2004
TspRI	CASTG	8 cut(s)	841, 878, 896, 1026, 1455, 1655, 2037, 2439
Tth111I	GACNNNGTC	1 cut(s)	793
Vha464I	CTTAAG	2 cut(s)	1868, 2383
VneI	GTGCAC	1 cut(s)	1003
VpaK11BI	GGWCC	3 cut(s)	321, 1526, 1864
XapI	RAATTY	6 cut(s)	52, 197, 328, 1911, 1935, 2024
XbaI	TCTAGA	1 cut(s)	164
XceI	RCATGY	2 cut(s)	1720, 2141
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1729, 2431
XmiI	GTMKAC	1 cut(s)	720
XmnI	GAANNNNTTC	2 cut(s)	629, 2026
XspI	CTAG	9 cut(s)	140, 165, 528, 543, 815, 1286, 1425, 1812, 2442
Zsp2I	ATGCAT	1 cut(s)	2143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.