Rmu_sc0000712.1_g000014

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000712.1
OG0001151
Physical Location & Seq
Reverse (-)
65605 .. 66150
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000712.1_g000014.1.cds

Sequence Viewer

Length: 546 bp
atgaacaacaccatttggtcttccaattcttccagagtcccagaaaatcctgttgcacagcttttggagactggaaaacttgttcttagagacagtactatgacaggctctggaagctatgtgtggcaaagttctgatttcccatcagacacattgttagcggggatgaagctgggatggaacttcagaaggggcctcaaccaatatttgacttcatggaaaaatgccactgatccatctcttggggcatatacctatgggatagataatgatgtgttgcctcagtttgtttttgtcgaagggtctagcaaaaggttctgtagtggaccttggaatggtcgtcgattccctggctcttatgtttcgaacaatactaacacagttataaagccaacttttgtgtacaataccaatgagatatattacacgtttgaggaagctaaaagctctattactacaagactacagctgtctgaatggggtgtgatgcagcggctagtgctgaataagggaagtgatgaaggaaaatcagttttgtgtgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

181

Amino Acids

20.26

Weight (kDa)

8.53

Isoelectric Point (pI)

32.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 386
AccB7I CCANNNNNTGG 1 cut(s) 242
AciI CCGC 2 cut(s) 161, 493
AclWI GGATC 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 169
AfaI GTAC 2 cut(s) 97, 404
AfiI CCNNNNNNNGG 2 cut(s) 242, 335
AflIII ACRYGT 1 cut(s) 426
AjnI CCWGG 1 cut(s) 349
AloI GAACNNNNNNTCC 2 cut(s) 66, 98
AluBI AGCT 6 cut(s) 61, 117, 172, 440, 447, 469
AluI AGCT 6 cut(s) 61, 117, 172, 440, 447, 469
Alw26I GTCTC 2 cut(s) 62, 84
AlwI GGATC 1 cut(s) 227
AlwNI CAGNNNCTG 1 cut(s) 110
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 490
AspS9I GGNCC 2 cut(s) 193, 326
AsuII TTCGAA 1 cut(s) 365
AvaII GGWCC 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 502
BccI CCATC 3 cut(s) 151, 171, 244
BciT130I CCWGG 1 cut(s) 351
BcoDI GTCTC 2 cut(s) 62, 84
BfaI CTAG 2 cut(s) 306, 497
BfmI CTRYAG 2 cut(s) 319, 464
BisI GCNGC 2 cut(s) 491, 494
BlsI GCNGC 2 cut(s) 492, 495
BmcAI AGTACT 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 193, 326
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 1 cut(s) 477
BpiI GAAGAC 1 cut(s) 12
Bpu14I TTCGAA 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 329, 349
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 335
Bse1I ACTGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 2 cut(s) 329, 349
BseGI GGATG 2 cut(s) 171, 182
BseLI CCNNNNNNNGG 2 cut(s) 242, 335
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 502
BseYI CCCAGC 1 cut(s) 172
BshFI GGCC 1 cut(s) 195
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 242, 335
BsmAI GTCTC 2 cut(s) 62, 84
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 1 cut(s) 195
Bsp119I TTCGAA 1 cut(s) 365
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 1 cut(s) 232
BspACI CCGC 2 cut(s) 161, 493
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 194
BspPI GGATC 1 cut(s) 227
BspT104I TTCGAA 1 cut(s) 365
BsrGI TGTACA 1 cut(s) 402
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 329, 349
BssMI GATC 1 cut(s) 232
BssT1I CCWWGG 1 cut(s) 329
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 2 cut(s) 95, 382
BstAUI TGTACA 1 cut(s) 402
BstBI TTCGAA 1 cut(s) 365
BstDEI CTNAG 2 cut(s) 86, 282
BstF5I GGATG 2 cut(s) 171, 182
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 2 cut(s) 62, 84
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 2 cut(s) 114, 499
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 2 cut(s) 319, 464
BstV1I GCAGC 1 cut(s) 502
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 1 cut(s) 195
BtsCI GGATG 2 cut(s) 171, 182
BtsIMutI CAGTG 1 cut(s) 228
CaiI CAGNNNCTG 1 cut(s) 110
Cfr13I GGNCC 2 cut(s) 193, 326
Csp6I GTAC 2 cut(s) 96, 403
CviAII CATG 1 cut(s) 216
CviQI GTAC 2 cut(s) 96, 403
DdeI CTNAG 2 cut(s) 86, 282
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 329
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 329
FaeI CATG 1 cut(s) 219
FaiI YATR 9 cut(s) 101, 120, 217, 250, 252, 258, 360, 386, 421
FaqI GGGAC 1 cut(s) 23
FatI CATG 1 cut(s) 215
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 491, 494
FokI GGATG 2 cut(s) 178, 189
Fsp4HI GCNGC 2 cut(s) 491, 494
FspBI CTAG 2 cut(s) 306, 497
GluI GCNGC 2 cut(s) 491, 494
GsaI CCCAGC 1 cut(s) 176
HaeIII GGCC 1 cut(s) 195
Hin1II CATG 1 cut(s) 219
HinfI GANTC 2 cut(s) 36, 345
Hpy166II GTNNAC 2 cut(s) 326, 403
Hpy188I TCNGA 4 cut(s) 136, 148, 188, 475
Hpy188III TCNNGA 2 cut(s) 33, 111
Hpy8I GTNNAC 2 cut(s) 326, 403
Hpy99I CGWCG 1 cut(s) 345
HpyAV CCTTC 3 cut(s) 183, 293, 515
HpyCH4III ACNGT 2 cut(s) 95, 382
HpyCH4IV ACGT 1 cut(s) 428
HpyCH4V TGCA 2 cut(s) 56, 490
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 499
HpyF3I CTNAG 2 cut(s) 86, 282
HpySE526I ACGT 1 cut(s) 428
Hsp92II CATG 1 cut(s) 219
Kzo9I GATC 1 cut(s) 232
LpnPI CCDG 9 cut(s) 46, 54, 57, 63, 90, 96, 158, 336, 363
Lsp1109I GCAGC 1 cut(s) 502
LweI GCATC 1 cut(s) 477
MaeI CTAG 2 cut(s) 306, 497
MaeII ACGT 1 cut(s) 428
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 2 cut(s) 12, 21
MluCI AATT 1 cut(s) 25
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 3 cut(s) 206, 291, 427
MspA1I CMGCKG 2 cut(s) 469, 493
MspR9I CCNGG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 2 cut(s) 114, 499
NdeII GATC 1 cut(s) 232
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 1 cut(s) 194
NspV TTCGAA 1 cut(s) 365
PfeI GAWTC 1 cut(s) 345
PflMI CCANNNNNTGG 1 cut(s) 242
PkrI GCNGC 2 cut(s) 492, 495
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PsiI TTATAA 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 2 cut(s) 193, 326
PstNI CAGNNNCTG 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 469
RsaI GTAC 2 cut(s) 97, 404
RsaNI GTAC 2 cut(s) 96, 403
SatI GCNGC 2 cut(s) 491, 494
Sau3AI GATC 1 cut(s) 232
Sau96I GGNCC 2 cut(s) 193, 326
ScaI AGTACT 1 cut(s) 97
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 351
SfaNI GCATC 1 cut(s) 477
SfcI CTRYAG 2 cut(s) 319, 464
SfuI TTCGAA 1 cut(s) 365
SinI GGWCC 1 cut(s) 326
Sse9I AATT 1 cut(s) 25
SsiI CCGC 2 cut(s) 161, 493
SspI AATATT 1 cut(s) 206
SspMI CTAG 2 cut(s) 306, 497
StyD4I CCNGG 1 cut(s) 349
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 2 cut(s) 95, 382
TaiI ACGT 1 cut(s) 431
TaqI TCGA 3 cut(s) 297, 343, 365
TasI AATT 1 cut(s) 25
TatI WGTACW 2 cut(s) 95, 402
TauI GCSGC 1 cut(s) 496
TfiI GAWTC 1 cut(s) 345
TscAI CASTG 1 cut(s) 235
TseI GCWGC 1 cut(s) 490
TspDTI ATGAA 4 cut(s) 17, 182, 204, 534
TspRI CASTG 1 cut(s) 235
Van91I CCANNNNNTGG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 326
XspI CTAG 2 cut(s) 306, 497
ZrmI AGTACT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.