Rh5CG281000

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001151
Physical Location & Seq
Forward (+)
30643078 .. 30644828
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG281000.1

Sequence Viewer

Length: 1411 bp
ATGAAGGGCCTTTCTTTCATCGTCTTTACCTCTCTACTCCAATTTTTAGTATTGAATTTGTGCACTGCAGCTGATACAATATCTCCATCACAATCCATAACCGGCTCTGATACCTTGGTTTCTTCCAGCGCAAGCTTTGAATTGGGACTCTTCTCTCCCGGCAACTCTGGAACCTGGTACTTGGGAATTTGGTACAAGAAATTTCCAAATATTGTTGTATGGGTTGCTAATAGAGAAAATCCAATTCCTGGTTCACATGGAGCCTTGAAATTGTCCAAAAATGGCAGTCTATTCATTTCCGATCAGATGAACAACACCATTTGGTCTTCCAATTCTTCCAGAGTCCCAGAAAATCCTGATGCACAGCTTTTGGAGACTGGAAATCTTGTTGTTAGGGACAGTGCTATGACAGGCTCTGAAAGCTATGTGTGGCAAAGTTTTGATTTCCCATCAGACACATTGTTAGCGGGGATGAAGCTGGGATGGAACTTCAAAAGGGGCCTCAACCAATATTTGACTTCATGGAAAAATGCCACTGATCCATCTCTTGGGGCATATACCTATGGGATGGATAATGATGTGTTGCCTCAGTTTGTTTTTGCCGAAGGGTCTAGCAAAAGGTTCCGTACTGGACCTTGGAATGGTCTTCGATTCCCTGGCTCTTACGTTTCGAACAATACTAACACAGTTATAAAGCCAACTTTTGTGTACAATACCAATGAGATATATTACACGTTTGAGGCTGCTGAAAGCTCTATTACTACAAGACTACAGCTGTCTGTATCAGGTGTGATGCAGCGGCTAGTGCTGAATAAGGGAAGCACAGAATGGGCCCTTATGTATACTTTGCAGAATGATCAGTGTAATAATTATGGGGAGTGTGGAGCAAATGGCATTTGCAGAATTAATAAGGTACCAATTTGCGATTGCTTGCAGGGGTTTGTTCCTAAATCTCCGCAAGAGTGGGTGGTGCTTAATGGGACAAGTGGTTGCAAAAGGGAGACGGCACTGGATTGCCAGAAGGGAGAAGGATTTCTGAAACTGCAAAATGTGAAACTGCCAGACCTGCTGGATATTTGGGTGAACAAGAGCATGAGTACAGAGGAATGTGAGGCAAATTGCTTGAAGAATTGTTCCTGCATAGCTTATGCTAATTCAGATATTCGGAGTGGAGGCAGTGGCTGTGTTATGTGGTTTGGAAATCTGATTGATATGCGGGAGTTTGTTGAGGATCTTGGAGAGCAAGATATCTTTATTCGGATGCCAGCTTCTGAACTAGGTGCTACCAGACTTGCCGGCAAGAAGCATAACAGAGTAGTACTCATCTCTGTCCTATCAGCAGCTTCTGTGTTTCTTTTTCTGGGTTTGTTTTGTTGGTGTATAATTCTGAAGCAGAGAGGGAACAAACGGG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

470

Amino Acids

52.01

Weight (kDa)

7.36

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 72 - 176 1.7e-35 D-mannose binding lectin
S_locus_glycop PF00954 208 - 318 3.3e-26 S-locus glycoprotein domain
PAN_2 PF08276 339 - 405 6.7e-23 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 692
Acc36I ACCTGC 1 cut(s) 1074
Acc65I GGTACC 1 cut(s) 913
AccB1I GGYRCC 1 cut(s) 913
AccB7I CCANNNNNTGG 2 cut(s) 248, 548
AccI GTMKAC 1 cut(s) 842
AciI CCGC 4 cut(s) 467, 799, 956, 1216
AclWI GGATC 2 cut(s) 533, 1239
AcsI RAATTY 3 cut(s) 55, 186, 200
AcuI CTGAAG 1 cut(s) 1409
AfaI GTAC 7 cut(s) 179, 194, 628, 710, 915, 1099, 1320
AfiI CCNNNNNNNGG 3 cut(s) 248, 548, 641
AflIII ACRYGT 1 cut(s) 732
AgsI TTSAA 5 cut(s) 55, 140, 268, 493, 1126
AjnI CCWGG 3 cut(s) 173, 247, 655
AjuI GAANNNNNNNTTGG 2 cut(s) 235, 267
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 2 cut(s) 368, 995
Alw44I GTGCAC 1 cut(s) 61
AlwI GGATC 2 cut(s) 533, 1239
AlwNI CAGNNNCTG 4 cut(s) 416, 1182, 1271, 1346
AoxI GGCC 3 cut(s) 7, 499, 831
ApaI GGGCCC 1 cut(s) 835
ApaLI GTGCAC 1 cut(s) 61
ApeKI GCWGC 4 cut(s) 68, 743, 796, 1340
ApoI RAATTY 3 cut(s) 55, 186, 200
AseI ATTAAT 1 cut(s) 906
Asp700I GAANNNNTTC 1 cut(s) 1032
Asp718I GGTACC 1 cut(s) 913
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 5 cut(s) 7, 499, 632, 831, 832
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 1093
AsuII TTCGAA 1 cut(s) 671
AvaII GGWCC 1 cut(s) 632
BaeGI GKGCMC 2 cut(s) 65, 835
BaeI ACNNNNGTAYC 2 cut(s) 102, 135
BanI GGYRCC 1 cut(s) 913
BanII GRGCYC 1 cut(s) 835
BbsI GAAGAC 2 cut(s) 318, 638
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 4 cut(s) 80, 730, 808, 1352
BccI CCATC 5 cut(s) 94, 457, 477, 550, 562
BceAI ACGGC 1 cut(s) 1020
BciT130I CCWGG 3 cut(s) 175, 249, 657
BclI TGATCA 1 cut(s) 856
BcnI CCSGG 1 cut(s) 159
BcoDI GTCTC 2 cut(s) 368, 995
BfaI CTAG 3 cut(s) 612, 803, 1277
BfmI CTRYAG 2 cut(s) 66, 770
BfuAI ACCTGC 1 cut(s) 1074
BisI GCNGC 5 cut(s) 69, 744, 797, 800, 1341
BlsI GCNGC 5 cut(s) 70, 745, 798, 801, 1342
BmcAI AGTACT 1 cut(s) 1320
Bme1390I CCNGG 4 cut(s) 159, 175, 249, 657
Bme18I GGWCC 1 cut(s) 632
BmgT120I GGNCC 5 cut(s) 7, 499, 632, 831, 832
BmiI GGNNCC 6 cut(s) 172, 262, 500, 623, 833, 915
BmrFI CCNGG 4 cut(s) 159, 175, 249, 657
BmsI GCATC 3 cut(s) 349, 783, 1251
BpiI GAAGAC 2 cut(s) 318, 638
BplI GAGNNNNNCTC 2 cut(s) 1305, 1337
Bpu14I TTCGAA 1 cut(s) 671
BpuMI CCSGG 1 cut(s) 159
BsaJI CCNNGG 3 cut(s) 114, 635, 655
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 548, 641
Bse118I RCCGGY 2 cut(s) 101, 1295
Bse1I ACTGG 3 cut(s) 382, 634, 1014
BseBI CCWGG 3 cut(s) 175, 249, 657
BseDI CCNNGG 3 cut(s) 114, 635, 655
BseGI GGATG 4 cut(s) 477, 488, 573, 1266
BseLI CCNNNNNNNGG 3 cut(s) 248, 548, 641
BseMII CTCAG 1 cut(s) 602
BseNI ACTGG 3 cut(s) 382, 634, 1014
BseSI GKGCMC 2 cut(s) 65, 835
BseXI GCAGC 4 cut(s) 80, 730, 808, 1352
BseYI CCCAGC 1 cut(s) 478
BshFI GGCC 3 cut(s) 9, 501, 833
BshNI GGYRCC 1 cut(s) 913
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 3 cut(s) 102, 159, 1296
BslFI GGGAC 4 cut(s) 159, 329, 410, 994
BslI CCNNNNNNNGG 3 cut(s) 248, 548, 641
BsmAI GTCTC 2 cut(s) 368, 995
BsmBI CGTCTC 1 cut(s) 995
BsmFI GGGAC 4 cut(s) 159, 329, 410, 994
BsnI GGCC 3 cut(s) 9, 501, 833
Bsp119I TTCGAA 1 cut(s) 671
Bsp120I GGGCCC 1 cut(s) 831
Bsp1286I GDGCHC 2 cut(s) 65, 835
Bsp1407I TGTACA 1 cut(s) 708
Bsp143I GATC 4 cut(s) 301, 538, 856, 1231
BspACI CCGC 4 cut(s) 467, 799, 956, 1216
BspANI GGCC 3 cut(s) 9, 501, 833
BspCNI CTCAG 1 cut(s) 601
BspLI GGNNCC 6 cut(s) 172, 262, 500, 623, 833, 915
BspMAI CTGCAG 1 cut(s) 70
BspMI ACCTGC 1 cut(s) 1074
BspPI GGATC 2 cut(s) 533, 1239
BspT104I TTCGAA 1 cut(s) 671
BspT107I GGYRCC 1 cut(s) 913
BsrFI RCCGGY 2 cut(s) 101, 1295
BsrGI TGTACA 1 cut(s) 708
BsrI ACTGG 3 cut(s) 382, 634, 1014
BssAI RCCGGY 2 cut(s) 101, 1295
BssECI CCNNGG 3 cut(s) 114, 635, 655
BssMI GATC 4 cut(s) 301, 538, 856, 1231
BssNAI GTATAC 1 cut(s) 843
BssT1I CCWWGG 2 cut(s) 114, 635
Bst1107I GTATAC 1 cut(s) 843
Bst2UI CCWGG 3 cut(s) 175, 249, 657
Bst4CI ACNGT 2 cut(s) 401, 688
Bst6I CTCTTC 1 cut(s) 155
BstAUI TGTACA 1 cut(s) 708
BstBI TTCGAA 1 cut(s) 671
BstC8I GCNNGC 4 cut(s) 133, 932, 1266, 1297
BstDEI CTNAG 1 cut(s) 588
BstF5I GGATG 4 cut(s) 477, 488, 573, 1266
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 4 cut(s) 304, 541, 859, 1234
BstMAI GTCTC 2 cut(s) 368, 995
BstMBI GATC 4 cut(s) 301, 538, 856, 1231
BstMWI GCNNNNNNNGC 3 cut(s) 420, 805, 1066
BstNI CCWGG 3 cut(s) 175, 249, 657
BstSCI CCNGG 4 cut(s) 157, 173, 247, 655
BstSFI CTRYAG 2 cut(s) 66, 770
BstSLI GKGCMC 2 cut(s) 65, 835
BstV1I GCAGC 4 cut(s) 80, 730, 808, 1352
BstV2I GAAGAC 2 cut(s) 318, 638
BstX2I RGATCY 1 cut(s) 1231
BstYI RGATCY 1 cut(s) 1231
BstZ17I GTATAC 1 cut(s) 843
BsuRI GGCC 3 cut(s) 9, 501, 833
BtsCI GGATG 4 cut(s) 477, 488, 573, 1266
BtsI GCAGTG 2 cut(s) 63, 1183
BtsIMutI CAGTG 6 cut(s) 63, 406, 534, 866, 1007, 1183
BveI ACCTGC 1 cut(s) 1074
Cac8I GCNNGC 4 cut(s) 133, 932, 1266, 1297
CaiI CAGNNNCTG 4 cut(s) 416, 1182, 1271, 1346
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 2 cut(s) 101, 1295
Cfr13I GGNCC 5 cut(s) 7, 499, 632, 831, 832
CsiI ACCWGGT 1 cut(s) 173
Csp6I GTAC 7 cut(s) 178, 193, 627, 709, 914, 1098, 1319
CviAII CATG 3 cut(s) 257, 522, 1093
CviQI GTAC 7 cut(s) 178, 193, 627, 709, 914, 1098, 1319
DdeI CTNAG 1 cut(s) 588
DpnI GATC 4 cut(s) 303, 540, 858, 1233
DpnII GATC 4 cut(s) 301, 538, 856, 1231
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco130I CCWWGG 2 cut(s) 114, 635
Eco24I GRGCYC 1 cut(s) 835
Eco32I GATATC 1 cut(s) 1249
Eco47I GGWCC 1 cut(s) 632
Eco57I CTGAAG 1 cut(s) 1409
EcoO109I RGGNCCY 3 cut(s) 7, 499, 832
EcoRII CCWGG 3 cut(s) 173, 247, 655
EcoRV GATATC 1 cut(s) 1249
EcoT14I CCWWGG 2 cut(s) 114, 635
EcoT38I GRGCYC 1 cut(s) 835
ErhI CCWWGG 2 cut(s) 114, 635
Esp3I CGTCTC 1 cut(s) 995
FaeI CATG 3 cut(s) 260, 525, 1096
FaqI GGGAC 4 cut(s) 159, 329, 410, 994
FatI CATG 3 cut(s) 256, 521, 1092
FauI CCCGC 2 cut(s) 460, 1209
FbaI TGATCA 1 cut(s) 856
FblI GTMKAC 1 cut(s) 842
Fnu4HI GCNGC 5 cut(s) 69, 744, 797, 800, 1341
FokI GGATG 4 cut(s) 484, 495, 580, 1273
FriOI GRGCYC 1 cut(s) 835
Fsp4HI GCNGC 5 cut(s) 69, 744, 797, 800, 1341
FspBI CTAG 3 cut(s) 612, 803, 1277
GlaI GCGC 1 cut(s) 130
GluI GCNGC 5 cut(s) 69, 744, 797, 800, 1341
GsaI CCCAGC 1 cut(s) 482
HaeIII GGCC 3 cut(s) 9, 501, 833
HapII CCGG 3 cut(s) 102, 159, 1296
HhaI GCGC 1 cut(s) 131
Hin1II CATG 3 cut(s) 260, 525, 1096
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 133
HinfI GANTC 3 cut(s) 147, 342, 651
HpaII CCGG 3 cut(s) 102, 159, 1296
HphI GGTGA 1 cut(s) 1093
Hpy166II GTNNAC 5 cut(s) 63, 254, 709, 843, 1084
Hpy188III TCNNGA 3 cut(s) 168, 339, 356
Hpy8I GTNNAC 5 cut(s) 63, 254, 709, 843, 1084
HpyAV CCTTC 3 cut(s) 599, 1015, 1022
HpyCH4III ACNGT 2 cut(s) 401, 688
HpyCH4IV ACGT 2 cut(s) 666, 734
HpyF10VI GCNNNNNNNGC 3 cut(s) 420, 805, 1066
HpyF3I CTNAG 1 cut(s) 588
HpySE526I ACGT 2 cut(s) 666, 734
Hsp92II CATG 3 cut(s) 260, 525, 1096
HspAI GCGC 1 cut(s) 129
KpnI GGTACC 1 cut(s) 917
KroI GCCGGC 1 cut(s) 1295
KroNI GCCGGC 1 cut(s) 1297
Ksp22I TGATCA 1 cut(s) 856
Kzo9I GATC 4 cut(s) 301, 538, 856, 1231
LmnI GCTCC 2 cut(s) 260, 884
Lsp1109I GCAGC 4 cut(s) 80, 730, 808, 1352
LweI GCATC 3 cut(s) 349, 783, 1251
MabI ACCWGGT 1 cut(s) 173
MaeI CTAG 3 cut(s) 612, 803, 1277
MaeII ACGT 2 cut(s) 666, 734
MalI GATC 4 cut(s) 303, 540, 858, 1233
MboI GATC 4 cut(s) 301, 538, 856, 1231
MboII GAAGA 6 cut(s) 114, 142, 318, 327, 638, 1138
MflI RGATCY 1 cut(s) 1231
MhlI GDGCHC 2 cut(s) 65, 835
MlyI GAGTC 2 cut(s) 141, 351
MnlI CCTC 9 cut(s) 40, 512, 597, 733, 1096, 1105, 1166, 1222, 1391
MroNI GCCGGC 1 cut(s) 1295
MroXI GAANNNNTTC 1 cut(s) 1032
MseI TTAA 2 cut(s) 906, 975
MspA1I CMGCKG 3 cut(s) 71, 775, 799
MspI CCGG 3 cut(s) 102, 159, 1296
MspR9I CCNGG 4 cut(s) 159, 175, 249, 657
MvaI CCWGG 3 cut(s) 175, 249, 657
MwoI GCNNNNNNNGC 3 cut(s) 420, 805, 1066
NaeI GCCGGC 1 cut(s) 1297
NciI CCSGG 1 cut(s) 159
NdeII GATC 4 cut(s) 301, 538, 856, 1231
NgoMIV GCCGGC 1 cut(s) 1295
NlaIII CATG 3 cut(s) 260, 525, 1096
NlaIV GGNNCC 6 cut(s) 172, 262, 500, 623, 833, 915
NspV TTCGAA 1 cut(s) 671
PdiI GCCGGC 1 cut(s) 1297
PdmI GAANNNNTTC 1 cut(s) 1032
PfeI GAWTC 1 cut(s) 651
PflMI CCANNNNNTGG 2 cut(s) 248, 548
PkrI GCNGC 5 cut(s) 70, 745, 798, 801, 1342
PleI GAGTC 2 cut(s) 141, 350
PpsI GAGTC 2 cut(s) 141, 350
PshBI ATTAAT 1 cut(s) 906
PsiI TTATAA 1 cut(s) 692
Psp6I CCWGG 3 cut(s) 173, 247, 655
PspFI CCCAGC 1 cut(s) 478
PspGI CCWGG 3 cut(s) 173, 247, 655
PspN4I GGNNCC 6 cut(s) 172, 262, 500, 623, 833, 915
PspOMI GGGCCC 1 cut(s) 831
PspPI GGNCC 5 cut(s) 7, 499, 632, 831, 832
PstI CTGCAG 1 cut(s) 70
PstNI CAGNNNCTG 4 cut(s) 416, 1182, 1271, 1346
PsuI RGATCY 1 cut(s) 1231
PvuII CAGCTG 2 cut(s) 71, 775
RsaI GTAC 7 cut(s) 179, 194, 628, 710, 915, 1099, 1320
RsaNI GTAC 7 cut(s) 178, 193, 627, 709, 914, 1098, 1319
SaqAI TTAA 2 cut(s) 906, 975
SatI GCNGC 5 cut(s) 69, 744, 797, 800, 1341
Sau3AI GATC 4 cut(s) 301, 538, 856, 1231
Sau96I GGNCC 5 cut(s) 7, 499, 632, 831, 832
ScaI AGTACT 1 cut(s) 1320
SchI GAGTC 2 cut(s) 141, 351
ScrFI CCNGG 4 cut(s) 159, 175, 249, 657
SduI GDGCHC 2 cut(s) 65, 835
SexAI ACCWGGT 1 cut(s) 173
SfaNI GCATC 3 cut(s) 349, 783, 1251
SfcI CTRYAG 2 cut(s) 66, 770
SfuI TTCGAA 1 cut(s) 671
SinI GGWCC 1 cut(s) 632
SsiI CCGC 4 cut(s) 467, 799, 956, 1216
SspI AATATT 2 cut(s) 211, 512
SspMI CTAG 3 cut(s) 612, 803, 1277
StyD4I CCNGG 4 cut(s) 157, 173, 247, 655
StyI CCWWGG 2 cut(s) 114, 635
TaaI ACNGT 2 cut(s) 401, 688
TaiI ACGT 2 cut(s) 669, 737
TaqI TCGA 2 cut(s) 649, 671
TatI WGTACW 3 cut(s) 708, 1097, 1318
TauI GCSGC 1 cut(s) 802
TfiI GAWTC 1 cut(s) 651
Tru1I TTAA 2 cut(s) 906, 975
Tru9I TTAA 2 cut(s) 906, 975
TscAI CASTG 6 cut(s) 70, 406, 541, 866, 1014, 1183
TseI GCWGC 4 cut(s) 68, 743, 796, 1340
TspDTI ATGAA 6 cut(s) 7, 17, 283, 323, 488, 510
TspGWI ACGGA 1 cut(s) 614
TspRI CASTG 6 cut(s) 70, 406, 541, 866, 1014, 1183
Van91I CCANNNNNTGG 2 cut(s) 248, 548
VneI GTGCAC 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 632
VspI ATTAAT 1 cut(s) 906
XapI RAATTY 3 cut(s) 55, 186, 200
XmiI GTMKAC 1 cut(s) 842
XmnI GAANNNNTTC 1 cut(s) 1032
XspI CTAG 3 cut(s) 612, 803, 1277
ZrmI AGTACT 1 cut(s) 1320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.