Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7984260.1

Orthogroup ID

OG0001151

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 426

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7984260.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 337 bp

atgaacaacactgtatggtattctaatttttccacagtactcgaagatcctgttgcacagcttttggagactggaaattttgttgtcagagacaaggctacagcaggttcggaaagttttgtatggcagagttttgattccccatcggatacattgttagcagggatgaggcttggatgggatttcagaaccgggctcaacaagttcttgacttcttggaaaaatgctagtgatccatctcttggtgagtatacctataggattgttaatcttgctttgcctcagcttgttcttgctaagggatcggagaaagagtttcgaagtgggccctggaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

112

Amino Acids

12.59

Weight (kDa)

4.99

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21260 FvH4_3g21270 FvH4_3g21270 FvH4_3g21270 FvH4_3g21270 FvH4_3g21270 FvH4_3g21270 FvH4_3g21270 FvH4_3g21270 FvH4_3g21271 FvH4_3g32520
malus_domestica	MD03G1186000.v1.1 MD03G1186100.v1.1 MD11G1233600.v1.1
prunus_persica	Prupe.4G193200_v2.0.a1 Prupe.4G193300_v2.0.a1 Prupe.4G193300_v2.0.a1 Prupe.4G193400_v2.0.a1 Prupe.4G193600_v2.0.a1 Prupe.4G193600_v2.0.a1 Prupe.4G193600_v2.0.a1
pyrus_communis	pycom03g16570 pycom11g20590
rosa_chinensis	RchiOBHm_Chr5g0036211 RchiOBHm_Chr5g0036331 RchiOBHm_Chr5g0036341 RchiOBHm_Chr5g0036351 RchiOBHm_Chr5g0036361 RchiOBHm_Chr5g0059581
rosa_laevigata	RLG00000033688 RLG00000033689 RLG00000033691 RLG00000035304
rosa_multiflora	Rmu_co7984260.1_g000001 Rmu_co8380739.1_g000001 Rmu_sc0000712.1_g000014 Rmu_sc0000712.1_g000020 Rmu_sc0000712.1_g000021 Rmu_sc0000712.1_g000022 Rmu_sc0004068.1_g000004 Rmu_sc0006059.1_g000090 Rmu_sc0006059.1_g000091
rosa_roxburghii	Rroxscaffold_1G00021030 Rroxscaffold_1G00044450 Rroxscaffold_1G00044460
rosa_rugosa	Rorug05G0323300
rosa_samantha	Rh5AG388000 Rh5BG249300 Rh5BG400000 Rh5CG280800 Rh5CG280900 Rh5CG281000 Rh5CG424300 Rh5DG416200
rosa_wichuraiana	Rw5G022840 Rw5G022850 Rw5G022860 Rw5G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	242
AccI	GTMKAC	1 cut(s)	251
AclWI	GGATC	3 cut(s)	41, 227, 310
AcsI	RAATTY	1 cut(s)	76
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	329
AluBI	AGCT	2 cut(s)	61, 286
AluI	AGCT	2 cut(s)	61, 286
Alw26I	GTCTC	2 cut(s)	62, 84
AlwI	GGATC	3 cut(s)	41, 227, 310
AoxI	GGCC	1 cut(s)	326
ApaI	GGGCCC	1 cut(s)	330
ApoI	RAATTY	1 cut(s)	76
AspS9I	GGNCC	2 cut(s)	326, 327
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	257
AsuII	TTCGAA	1 cut(s)	319
BaeGI	GKGCMC	1 cut(s)	330
BanII	GRGCYC	2 cut(s)	198, 330
BbvCI	CCTCAGC	1 cut(s)	282
BccI	CCATC	3 cut(s)	151, 171, 244
BciT130I	CCWGG	1 cut(s)	331
BciVI	GTATCC	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	62, 84
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	2 cut(s)	99, 256
BfuAI	ACCTGC	1 cut(s)	95
BfuI	GTATCC	1 cut(s)	142
BmcAI	AGTACT	1 cut(s)	39
Bme1390I	CCNGG	2 cut(s)	193, 331
BmgT120I	GGNCC	2 cut(s)	326, 327
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	2 cut(s)	193, 331
Bpu10I	CCTNAGC	2 cut(s)	282, 297
Bpu14I	TTCGAA	1 cut(s)	319
BpuMI	CCSGG	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	329
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	2 cut(s)	171, 182
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	76
BseSI	GKGCMC	1 cut(s)	330
BshFI	GGCC	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	2 cut(s)	62, 84
BsnI	GGCC	1 cut(s)	328
Bsp119I	TTCGAA	1 cut(s)	319
Bsp120I	GGGCCC	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	198, 330
Bsp143I	GATC	3 cut(s)	46, 232, 302
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	95
BspPI	GGATC	3 cut(s)	41, 227, 310
BspT104I	TTCGAA	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	3 cut(s)	46, 232, 302
BssNAI	GTATAC	1 cut(s)	252
Bst1107I	GTATAC	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	13, 37
BstBI	TTCGAA	1 cut(s)	319
BstDEI	CTNAG	2 cut(s)	282, 297
BstF5I	GGATG	2 cut(s)	171, 182
BstKTI	GATC	3 cut(s)	49, 235, 305
BstMAI	GTCTC	2 cut(s)	62, 84
BstMBI	GATC	3 cut(s)	46, 232, 302
BstNI	CCWGG	1 cut(s)	331
BstSCI	CCNGG	2 cut(s)	191, 329
BstSFI	CTRYAG	2 cut(s)	99, 256
BstSLI	GKGCMC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BstZ17I	GTATAC	1 cut(s)	252
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	328
BtsCI	GGATG	2 cut(s)	171, 182
BtsIMutI	CAGTG	1 cut(s)	9
BveI	ACCTGC	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	326, 327
Csp6I	GTAC	1 cut(s)	38
CviJI	RGCY	6 cut(s)	61, 98, 172, 196, 286, 328
CviKI_1	RGCY	6 cut(s)	61, 98, 172, 196, 286, 328
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	2 cut(s)	282, 297
DpnI	GATC	3 cut(s)	48, 234, 304
DpnII	GATC	3 cut(s)	46, 232, 302
Eco24I	GRGCYC	2 cut(s)	198, 330
EcoO109I	RGGNCCY	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	329
EcoT38I	GRGCYC	2 cut(s)	198, 330
FaiI	YATR	4 cut(s)	16, 124, 252, 258
FblI	GTMKAC	1 cut(s)	251
FokI	GGATG	2 cut(s)	178, 189
FriOI	GRGCYC	2 cut(s)	198, 330
FspBI	CTAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	328
HapII	CCGG	1 cut(s)	192
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	5 cut(s)	89, 112, 148, 188, 307
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	1 cut(s)	252
HpyCH4III	ACNGT	2 cut(s)	13, 37
HpyCH4V	TGCA	1 cut(s)	56
HpyF3I	CTNAG	2 cut(s)	282, 297
Kzo9I	GATC	3 cut(s)	46, 232, 302
LpnPI	CCDG	6 cut(s)	57, 63, 90, 147, 205, 316
MaeI	CTAG	1 cut(s)	228
MalI	GATC	3 cut(s)	48, 234, 304
MboI	GATC	3 cut(s)	46, 232, 302
MboII	GAAGA	1 cut(s)	56
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	2 cut(s)	198, 330
MluCI	AATT	2 cut(s)	25, 76
MnlI	CCTC	2 cut(s)	162, 291
MseI	TTAA	1 cut(s)	267
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	193, 331
MvaI	CCWGG	1 cut(s)	331
NciI	CCSGG	1 cut(s)	193
NdeII	GATC	3 cut(s)	46, 232, 302
NlaIV	GGNNCC	1 cut(s)	328
NspV	TTCGAA	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	328
PspOMI	GGGCCC	1 cut(s)	326
PspPI	GGNCC	2 cut(s)	326, 327
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	267
Sau3AI	GATC	3 cut(s)	46, 232, 302
Sau96I	GGNCC	2 cut(s)	326, 327
ScaI	AGTACT	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	193, 331
SduI	GDGCHC	2 cut(s)	198, 330
SetI	ASST	4 cut(s)	63, 109, 257, 288
SfcI	CTRYAG	2 cut(s)	99, 256
SfuI	TTCGAA	1 cut(s)	319
Sse9I	AATT	2 cut(s)	25, 76
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	191, 329
TaaI	ACNGT	2 cut(s)	13, 37
TaqI	TCGA	2 cut(s)	42, 319
TasI	AATT	2 cut(s)	25, 76
TatI	WGTACW	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	1 cut(s)	228
ZrmI	AGTACT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.