Rh5CG280900

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001151
Physical Location & Seq
Forward (+)
30638122 .. 30639843
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG280900.1

Sequence Viewer

Length: 1272 bp
ATGGTGGCTCCAGTGGGAGAATTACCACCCCATGAAGTGTTCAGTTTATGCAGTGCAGTTGATACTATATCTCCAACACAATCCATCACCCGCTCCAATACCTTGGTTTCTTCCGGTGGAAGATTTGAATTAGGACTCTTCCCCTCCGGAAACTCTAAAGCATGGTATTTAGGAATTTGGTACACCAAGTTTTCGAATATTACTGTATGGGTCGCCAACAGAGAAAACCCAATTCCAGGTTCAGATGGAGCCCTGACATTAACCGAAAATGGTACTTTGGTCCTTTTAGACCAGATGAACAACACTGTATGGTATTCTAATTTTTCCACAGTAGTTGAAGATCCTGTTGCACAGCTTTTGGAGACTGGAAATTTTGTTGTCAGAGACAAGGCTACAGCGGGTTCGGAAAGTTTTGTATGGCAGAGTTTTGATTTCCCATCGGATACATTGTTAGCGGGGATGAAGCTTGGATGGGATTTCAGAACCGGCCTCAACAAGTTCTTGACTTCTTGGAAAAATTCTAGTGATCCATCTCCTGGTGAGTATACCTATAGGATTGTTAATCTTGCTTTGCCTCAGCTTGTTCTTGCTAAGGGATGGGAGAAAGAGTTTCGAAGTGGGCCCTGGAATGGTCTTCGGTTTACTGGTGTTCCTGTTTCGAACAATGAAATTATAACACCTAGTTATGTGTATGATACAAACGAGTTGTATTATACGTATGAGACTAATGACAATTCTCTTATTACAAGATTGCAGCTGACTGAAGGGGGTGACATGAAGCGGTTAGTGCTGAATGAAGGAAGCACTGAATGGAACGATATGTATAATTTGCTGAATGATCGATGTGATAGTTACGGGGAGTGTGGCGCAAATGGCATTTGCAGAATTAACAACTCACCCATTTGTGACTGCTTGGAGGGGTTTATTCCGAAATCCCAGCAAGAGTGGGAGGTGCTTAATACGACAAGTGGGTGCACGAGGAAGATACAATTGGATTGCCAGAAGGGAGAAGGGTTTCGGAAAATTCAAAATGTAAAACTGCCAGACCTGTTGGATTTTTGGGTCAACAAGAACCTGAACAAGAAGGAATGCAGGGCAGAGTGCTTGAAGAATTGTTCTTGTATTGCTTATGCTTATTCAGATTACAGTCTTGGAGGCACCGGCTGTCTGATGTGGTTTAAAGACCTTATTGATATCCGAGAGTTTGTTGATGAAAGTGAGCAACATATTTATATTAGGATGCCAGCATCAGAACTAGGTCAAAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

423

Amino Acids

47.67

Weight (kDa)

4.85

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 68 - 172 7.5e-35 D-mannose binding lectin
S_locus_glycop PF00954 204 - 312 3.1e-28 S-locus glycoprotein domain
PAN_2 PF08276 333 - 399 3.7e-22 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 674
AccB1I GGYRCC 1 cut(s) 1157
AccB7I CCANNNNNTGG 1 cut(s) 536
AccBSI CCGCTC 1 cut(s) 93
AccI GTMKAC 1 cut(s) 545
AccIII TCCGGA 1 cut(s) 146
AciI CCGC 4 cut(s) 91, 398, 455, 781
AclWI GGATC 2 cut(s) 335, 521
AcsI RAATTY 4 cut(s) 174, 370, 517, 1023
AcuI CTGAAG 1 cut(s) 783
AfaI GTAC 2 cut(s) 182, 274
AfiI CCNNNNNNNGG 3 cut(s) 236, 536, 629
AgsI TTSAA 4 cut(s) 128, 338, 1028, 1108
AjnI CCWGG 3 cut(s) 235, 535, 623
AjuI GAANNNNNNNTTGG 4 cut(s) 223, 255, 974, 1006
AluBI AGCT 4 cut(s) 355, 466, 580, 757
AluI AGCT 4 cut(s) 355, 466, 580, 757
Alw21I GWGCWC 1 cut(s) 977
Alw26I GTCTC 3 cut(s) 356, 378, 716
Alw44I GTGCAC 1 cut(s) 973
AlwI GGATC 2 cut(s) 335, 521
Aor13HI TCCGGA 1 cut(s) 146
AoxI GGCC 2 cut(s) 487, 620
ApaI GGGCCC 1 cut(s) 624
ApaLI GTGCAC 1 cut(s) 973
ApeKI GCWGC 1 cut(s) 754
ApoI RAATTY 4 cut(s) 174, 370, 517, 1023
Asp700I GAANNNNTTC 1 cut(s) 1014
AspLEI GCGC 1 cut(s) 869
AspS9I GGNCC 3 cut(s) 280, 620, 621
AsuHPI GGTGA 4 cut(s) 79, 551, 782, 888
AsuII TTCGAA 3 cut(s) 194, 613, 659
AvaII GGWCC 1 cut(s) 280
BaeGI GKGCMC 2 cut(s) 624, 977
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
BanI GGYRCC 1 cut(s) 1157
BanII GRGCYC 2 cut(s) 253, 624
BauI CACGAG 1 cut(s) 976
BbsI GAAGAC 1 cut(s) 626
Bbv12I GWGCWC 1 cut(s) 977
BbvCI CCTCAGC 1 cut(s) 576
BbvI GCAGC 1 cut(s) 766
BccI CCATC 6 cut(s) 92, 239, 445, 465, 538, 591
BciT130I CCWGG 3 cut(s) 237, 537, 625
BciVI GTATCC 1 cut(s) 436
BcoDI GTCTC 3 cut(s) 356, 378, 716
BfaI CTAG 3 cut(s) 522, 681, 1256
BfmI CTRYAG 2 cut(s) 393, 550
BfuI GTATCC 1 cut(s) 436
BisI GCNGC 1 cut(s) 755
BlsI GCNGC 1 cut(s) 756
Bme1390I CCNGG 3 cut(s) 237, 537, 625
Bme18I GGWCC 1 cut(s) 280
BmgT120I GGNCC 3 cut(s) 280, 620, 621
BmiI GGNNCC 4 cut(s) 9, 250, 622, 1159
BmrFI CCNGG 3 cut(s) 237, 537, 625
BmsI GCATC 2 cut(s) 1230, 1256
BpiI GAAGAC 1 cut(s) 626
Bpu10I CCTNAGC 2 cut(s) 576, 591
Bpu14I TTCGAA 3 cut(s) 194, 613, 659
Bsa29I ATCGAT 1 cut(s) 841
BsaAI YACGTR 1 cut(s) 717
BsaJI CCNNGG 2 cut(s) 102, 623
BsaWI WCCGGW 2 cut(s) 113, 146
BsaXI ACNNNNNCTCC 4 cut(s) 55, 85, 593, 623
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 536, 629
Bse118I RCCGGY 2 cut(s) 485, 1160
Bse1I ACTGG 3 cut(s) 11, 370, 649
BseAI TCCGGA 1 cut(s) 146
BseBI CCWGG 3 cut(s) 237, 537, 625
BseCI ATCGAT 1 cut(s) 841
BseDI CCNNGG 2 cut(s) 102, 623
BseGI GGATG 4 cut(s) 465, 476, 602, 1245
BseLI CCNNNNNNNGG 3 cut(s) 236, 536, 629
BseMII CTCAG 1 cut(s) 590
BseNI ACTGG 3 cut(s) 11, 370, 649
BseSI GKGCMC 2 cut(s) 624, 977
BseXI GCAGC 1 cut(s) 766
BseYI CCCAGC 1 cut(s) 936
BsgI GTGCAG 1 cut(s) 75
BshFI GGCC 2 cut(s) 489, 622
BshNI GGYRCC 1 cut(s) 1157
BshVI ATCGAT 1 cut(s) 841
BsiHKAI GWGCWC 1 cut(s) 977
BsiSI CCGG 4 cut(s) 114, 147, 486, 1161
BslI CCNNNNNNNGG 3 cut(s) 236, 536, 629
BsmAI GTCTC 3 cut(s) 356, 378, 716
BsmI GAATGC 1 cut(s) 1094
BsnI GGCC 2 cut(s) 489, 622
Bsp119I TTCGAA 3 cut(s) 194, 613, 659
Bsp120I GGGCCC 1 cut(s) 620
Bsp1286I GDGCHC 3 cut(s) 253, 624, 977
Bsp13I TCCGGA 1 cut(s) 146
Bsp143I GATC 3 cut(s) 340, 526, 838
BspACI CCGC 4 cut(s) 91, 398, 455, 781
BspANI GGCC 2 cut(s) 489, 622
BspCNI CTCAG 1 cut(s) 589
BspDI ATCGAT 1 cut(s) 841
BspEI TCCGGA 1 cut(s) 146
BspLI GGNNCC 4 cut(s) 9, 250, 622, 1159
BspPI GGATC 2 cut(s) 335, 521
BspT104I TTCGAA 3 cut(s) 194, 613, 659
BspT107I GGYRCC 1 cut(s) 1157
BsrBI CCGCTC 1 cut(s) 93
BsrFI RCCGGY 2 cut(s) 485, 1160
BsrI ACTGG 3 cut(s) 11, 370, 649
BssAI RCCGGY 2 cut(s) 485, 1160
BssECI CCNNGG 2 cut(s) 102, 623
BssMI GATC 3 cut(s) 340, 526, 838
BssNAI GTATAC 1 cut(s) 546
BssSI CACGAG 1 cut(s) 976
BssT1I CCWWGG 1 cut(s) 102
Bst1107I GTATAC 1 cut(s) 546
Bst2BI CACGAG 1 cut(s) 976
Bst2UI CCWGG 3 cut(s) 237, 537, 625
Bst4CI ACNGT 4 cut(s) 205, 307, 331, 1148
Bst6I CTCTTC 1 cut(s) 143
BstBAI YACGTR 1 cut(s) 717
BstBI TTCGAA 3 cut(s) 194, 613, 659
BstC8I GCNNGC 1 cut(s) 1245
BstDEI CTNAG 2 cut(s) 576, 591
BstF5I GGATG 4 cut(s) 465, 476, 602, 1245
BstHHI GCGC 1 cut(s) 869
BstKTI GATC 3 cut(s) 343, 529, 841
BstMAI GTCTC 3 cut(s) 356, 378, 716
BstMBI GATC 3 cut(s) 340, 526, 838
BstMWI GCNNNNNNNGC 2 cut(s) 787, 873
BstNI CCWGG 3 cut(s) 237, 537, 625
BstSCI CCNGG 3 cut(s) 235, 535, 623
BstSFI CTRYAG 2 cut(s) 393, 550
BstSLI GKGCMC 2 cut(s) 624, 977
BstSNI TACGTA 1 cut(s) 717
BstV1I GCAGC 1 cut(s) 766
BstV2I GAAGAC 1 cut(s) 626
BstX2I RGATCY 1 cut(s) 340
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 340
BstZ17I GTATAC 1 cut(s) 546
Bsu15I ATCGAT 1 cut(s) 841
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 2 cut(s) 489, 622
BsuTUI ATCGAT 1 cut(s) 841
BtsCI GGATG 4 cut(s) 465, 476, 602, 1245
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 4 cut(s) 18, 58, 303, 804
Cac8I GCNNGC 1 cut(s) 1245
CfoI GCGC 1 cut(s) 869
Cfr10I RCCGGY 2 cut(s) 485, 1160
Cfr13I GGNCC 3 cut(s) 280, 620, 621
ClaI ATCGAT 1 cut(s) 841
Csp6I GTAC 2 cut(s) 181, 273
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviAII CATG 3 cut(s) 32, 162, 775
CviQI GTAC 2 cut(s) 181, 273
DdeI CTNAG 2 cut(s) 576, 591
DpnI GATC 3 cut(s) 342, 528, 840
DpnII GATC 3 cut(s) 340, 526, 838
DraI TTTAAA 1 cut(s) 1180
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco105I TACGTA 1 cut(s) 717
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 2 cut(s) 253, 624
Eco32I GATATC 1 cut(s) 1195
Eco47I GGWCC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 783
EcoO109I RGGNCCY 1 cut(s) 621
EcoRII CCWGG 3 cut(s) 235, 535, 623
EcoRV GATATC 1 cut(s) 1195
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 2 cut(s) 253, 624
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 3 cut(s) 35, 165, 778
FatI CATG 3 cut(s) 31, 161, 774
FauI CCCGC 3 cut(s) 98, 391, 448
FblI GTMKAC 1 cut(s) 545
Fnu4HI GCNGC 1 cut(s) 755
FokI GGATG 4 cut(s) 472, 483, 609, 1252
FriOI GRGCYC 2 cut(s) 253, 624
Fsp4HI GCNGC 1 cut(s) 755
FspBI CTAG 3 cut(s) 522, 681, 1256
GlaI GCGC 1 cut(s) 868
GluI GCNGC 1 cut(s) 755
GsaI CCCAGC 1 cut(s) 940
HaeIII GGCC 2 cut(s) 489, 622
HapII CCGG 4 cut(s) 114, 147, 486, 1161
HhaI GCGC 1 cut(s) 869
Hin1II CATG 3 cut(s) 35, 165, 778
Hin6I GCGC 1 cut(s) 867
HinP1I GCGC 1 cut(s) 867
HincII GTYRAC 1 cut(s) 1066
HindII GTYRAC 1 cut(s) 1066
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 1 cut(s) 135
HpaII CCGG 4 cut(s) 114, 147, 486, 1161
HphI GGTGA 4 cut(s) 79, 551, 782, 888
Hpy166II GTNNAC 5 cut(s) 183, 546, 642, 975, 1066
Hpy188III TCNNGA 2 cut(s) 147, 502
Hpy8I GTNNAC 5 cut(s) 183, 546, 642, 975, 1066
HpyAV CCTTC 5 cut(s) 758, 791, 997, 1004, 1078
HpyCH4III ACNGT 4 cut(s) 205, 307, 331, 1148
HpyCH4IV ACGT 1 cut(s) 716
HpyCH4V TGCA 7 cut(s) 51, 56, 350, 754, 882, 975, 1092
HpyF10VI GCNNNNNNNGC 2 cut(s) 787, 873
HpyF3I CTNAG 2 cut(s) 576, 591
HpySE526I ACGT 1 cut(s) 716
Hsp92II CATG 3 cut(s) 35, 165, 778
HspAI GCGC 1 cut(s) 867
Kpn2I TCCGGA 1 cut(s) 146
Kzo9I GATC 3 cut(s) 340, 526, 838
LmnI GCTCC 3 cut(s) 13, 98, 248
Lsp1109I GCAGC 1 cut(s) 766
LweI GCATC 2 cut(s) 1230, 1256
MaeI CTAG 3 cut(s) 522, 681, 1256
MaeII ACGT 1 cut(s) 716
MaeIII GTNAC 3 cut(s) 770, 851, 905
MalI GATC 3 cut(s) 342, 528, 840
MbiI CCGCTC 1 cut(s) 93
MboI GATC 3 cut(s) 340, 526, 838
MboII GAAGA 7 cut(s) 102, 130, 132, 350, 626, 994, 1120
MfeI CAATTG 1 cut(s) 989
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 3 cut(s) 253, 624, 977
MlyI GAGTC 1 cut(s) 129
MmeI TCCRAC 2 cut(s) 98, 1032
MnlI CCTC 7 cut(s) 154, 500, 585, 910, 943, 972, 1148
MroI TCCGGA 1 cut(s) 146
MroXI GAANNNNTTC 1 cut(s) 1014
MseI TTAA 5 cut(s) 260, 561, 888, 957, 1179
MspA1I CMGCKG 2 cut(s) 398, 757
MspI CCGG 4 cut(s) 114, 147, 486, 1161
MspR9I CCNGG 3 cut(s) 237, 537, 625
MunI CAATTG 1 cut(s) 989
Mva1269I GAATGC 1 cut(s) 1094
MvaI CCWGG 3 cut(s) 237, 537, 625
MwoI GCNNNNNNNGC 2 cut(s) 787, 873
NdeII GATC 3 cut(s) 340, 526, 838
NlaIII CATG 3 cut(s) 35, 165, 778
NlaIV GGNNCC 4 cut(s) 9, 250, 622, 1159
NmuCI GTSAC 2 cut(s) 770, 905
NspV TTCGAA 3 cut(s) 194, 613, 659
PctI GAATGC 1 cut(s) 1094
PdmI GAANNNNTTC 1 cut(s) 1014
PflMI CCANNNNNTGG 1 cut(s) 536
PkrI GCNGC 1 cut(s) 756
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
Ppu21I YACGTR 1 cut(s) 717
PsiI TTATAA 1 cut(s) 674
Psp6I CCWGG 3 cut(s) 235, 535, 623
PspFI CCCAGC 1 cut(s) 936
PspGI CCWGG 3 cut(s) 235, 535, 623
PspN4I GGNNCC 4 cut(s) 9, 250, 622, 1159
PspOMI GGGCCC 1 cut(s) 620
PspPI GGNCC 3 cut(s) 280, 620, 621
PsuI RGATCY 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 757
RsaI GTAC 2 cut(s) 182, 274
RsaNI GTAC 2 cut(s) 181, 273
SaqAI TTAA 5 cut(s) 260, 561, 888, 957, 1179
SatI GCNGC 1 cut(s) 755
Sau3AI GATC 3 cut(s) 340, 526, 838
Sau96I GGNCC 3 cut(s) 280, 620, 621
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 3 cut(s) 237, 537, 625
SduI GDGCHC 3 cut(s) 253, 624, 977
SfaNI GCATC 2 cut(s) 1230, 1256
SfcI CTRYAG 2 cut(s) 393, 550
SfuI TTCGAA 3 cut(s) 194, 613, 659
SinI GGWCC 1 cut(s) 280
SnaBI TACGTA 1 cut(s) 717
SsiI CCGC 4 cut(s) 91, 398, 455, 781
SspI AATATT 1 cut(s) 199
SspMI CTAG 3 cut(s) 522, 681, 1256
StyD4I CCNGG 3 cut(s) 235, 535, 623
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 4 cut(s) 205, 307, 331, 1148
TaiI ACGT 1 cut(s) 719
TaqI TCGA 4 cut(s) 194, 613, 659, 841
Tru1I TTAA 5 cut(s) 260, 561, 888, 957, 1179
Tru9I TTAA 5 cut(s) 260, 561, 888, 957, 1179
TscAI CASTG 4 cut(s) 18, 58, 310, 811
TseFI GTSAC 2 cut(s) 770, 905
TseI GCWGC 1 cut(s) 754
Tsp45I GTSAC 2 cut(s) 770, 905
TspDTI ATGAA 7 cut(s) 48, 311, 476, 681, 791, 810, 1227
TspRI CASTG 4 cut(s) 18, 58, 310, 811
Van91I CCANNNNNTGG 1 cut(s) 536
VneI GTGCAC 1 cut(s) 973
VpaK11BI GGWCC 1 cut(s) 280
XapI RAATTY 4 cut(s) 174, 370, 517, 1023
XmiI GTMKAC 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 1014
XspI CTAG 3 cut(s) 522, 681, 1256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.