Rmu_sc0000712.1_g000020

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000712.1
OG0001151
Physical Location & Seq
Reverse (-)
90878 .. 91988
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000712.1_g000020.1.cds

Sequence Viewer

Length: 711 bp
atgacttgtgcagatgaaaatagaaagaaatcgctcgattggcaaaaacgagtcaacattataattggaactgcacgaggacttctctacctccaccaagactccagattgagaatcattcatagggacctcaagagtagcaacattttactcgacaatgagctgaaccccaaaatatctgacttcggcatagcaagaatttttggacttgatcagaccgaagcgaagacaaaacgagtgattggcacatatgggtatatgtctcccgagtacgtgattgatggccacttttcagtgaaatccgatgtctttagttttggagtgcttttgctagagatagtatgtggcagaaagaacagagggtttcatcatccagatcaccatcacagtcttctgggacatgcctggctactatggaacaaagaaaaggttttggaactattagatccatgcttggaggactcgtatgtcgagtttgaggtactaagatgtatacaagtgggtctattatgcgtgcaaaagcggcccatcgacagaccagtaatgtcatcagtggtgttcatgttaagcaatgagggagcaatattgcctcaaccgaaggagcctggtttcttcacagaacgaagttccatggatggtgataccttcataagtgaaggaagaagcaaaacaggaaacatccttaccattaccactatggaagctcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

236

Amino Acids

26.9

Weight (kDa)

7.12

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 62
AasI GACNNNNNNGTC 1 cut(s) 467
AccI GTMKAC 1 cut(s) 493
AciI CCGC 1 cut(s) 523
AclWI GGATC 1 cut(s) 440
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 1 cut(s) 198
AfaI GTAC 2 cut(s) 272, 483
AjnI CCWGG 2 cut(s) 404, 604
AluBI AGCT 2 cut(s) 163, 704
AluI AGCT 2 cut(s) 163, 704
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 2 cut(s) 283, 524
ApoI RAATTY 1 cut(s) 198
AspS9I GGNCC 2 cut(s) 127, 525
AsuHPI GGTGA 2 cut(s) 371, 650
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 1 cut(s) 127
BalI TGGCCA 1 cut(s) 285
BauI CACGAG 1 cut(s) 75
BbsI GAAGAC 2 cut(s) 233, 383
BccI CCATC 4 cut(s) 275, 390, 536, 629
BciT130I CCWGG 2 cut(s) 406, 606
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 267
BfaI CTAG 1 cut(s) 332
BisI GCNGC 1 cut(s) 524
BlsI GCNGC 1 cut(s) 525
Bme1390I CCNGG 2 cut(s) 406, 606
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 2 cut(s) 127, 525
BmiI GGNNCC 2 cut(s) 128, 603
BmrFI CCNGG 2 cut(s) 406, 606
BpiI GAAGAC 2 cut(s) 233, 383
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BpmI CTGGAG 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 116
BsaAI YACGTR 1 cut(s) 274
BsaBI GATNNNNATC 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 630
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 449, 479
Bse1I ACTGG 1 cut(s) 539
Bse3DI GCAATG 1 cut(s) 577
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 2 cut(s) 406, 606
BseDI CCNNGG 1 cut(s) 630
BseGI GGATG 3 cut(s) 370, 640, 678
BseJI GATNNNNATC 1 cut(s) 381
BseMI GCAATG 1 cut(s) 577
BseNI ACTGG 1 cut(s) 539
BsgI GTGCAG 2 cut(s) 30, 57
BshFI GGCC 2 cut(s) 285, 526
BsiHKCI CYCGRG 1 cut(s) 266
BslFI GGGAC 2 cut(s) 140, 411
BsmAI GTCTC 1 cut(s) 267
BsmFI GGGAC 2 cut(s) 140, 411
BsnI GGCC 2 cut(s) 285, 526
BsoBI CYCGRG 1 cut(s) 266
Bsp143I GATC 3 cut(s) 211, 376, 445
Bsp19I CCATGG 1 cut(s) 630
BspACI CCGC 1 cut(s) 523
BspANI GGCC 2 cut(s) 285, 526
BspLI GGNNCC 2 cut(s) 128, 603
BspPI GGATC 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 577
BsrI ACTGG 1 cut(s) 539
BssECI CCNNGG 1 cut(s) 630
BssMI GATC 3 cut(s) 211, 376, 445
BssNAI GTATAC 1 cut(s) 494
BssSI CACGAG 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 630
Bst1107I GTATAC 1 cut(s) 494
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 2 cut(s) 406, 606
Bst4CI ACNGT 1 cut(s) 389
BstBAI YACGTR 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 515
BstDEI CTNAG 1 cut(s) 485
BstDSI CCRYGG 1 cut(s) 630
BstF5I GGATG 3 cut(s) 370, 640, 678
BstKTI GATC 3 cut(s) 214, 379, 448
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 3 cut(s) 211, 376, 445
BstMWI GCNNNNNNNGC 2 cut(s) 40, 523
BstNI CCWGG 2 cut(s) 406, 606
BstNSI RCATGY 1 cut(s) 404
BstSCI CCNGG 2 cut(s) 404, 604
BstV2I GAAGAC 2 cut(s) 233, 383
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BstZ17I GTATAC 1 cut(s) 494
BsuRI GGCC 2 cut(s) 285, 526
BtgI CCRYGG 1 cut(s) 630
BtsCI GGATG 3 cut(s) 370, 640, 678
BtsIMutI CAGTG 2 cut(s) 300, 558
Cac8I GCNNGC 1 cut(s) 515
Cfr13I GGNCC 2 cut(s) 127, 525
Csp6I GTAC 2 cut(s) 271, 482
CviAII CATG 4 cut(s) 401, 450, 562, 631
CviJI RGCY 6 cut(s) 163, 285, 409, 526, 604, 704
CviKI_1 RGCY 6 cut(s) 163, 285, 409, 526, 604, 704
CviQI GTAC 2 cut(s) 271, 482
DdeI CTNAG 1 cut(s) 485
DpnI GATC 3 cut(s) 213, 378, 447
DpnII GATC 3 cut(s) 211, 376, 445
DrdI GACNNNNNNGTC 1 cut(s) 467
DseDI GACNNNNNNGTC 1 cut(s) 467
EaeI YGGCCR 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 630
Eco47I GGWCC 1 cut(s) 127
Eco88I CYCGRG 1 cut(s) 266
EcoO109I RGGNCCY 1 cut(s) 127
EcoRII CCWGG 2 cut(s) 404, 604
EcoT14I CCWWGG 1 cut(s) 630
ErhI CCWWGG 1 cut(s) 630
FaeI CATG 4 cut(s) 404, 453, 565, 634
FaqI GGGAC 2 cut(s) 140, 411
FatI CATG 4 cut(s) 400, 449, 561, 630
FauNDI CATATG 1 cut(s) 250
FbaI TGATCA 1 cut(s) 211
FblI GTMKAC 1 cut(s) 493
Fnu4HI GCNGC 1 cut(s) 524
FokI GGATG 3 cut(s) 357, 647, 665
Fsp4HI GCNGC 1 cut(s) 524
FspBI CTAG 1 cut(s) 332
GluI GCNGC 1 cut(s) 524
GsuI CTGGAG 1 cut(s) 88
HaeIII GGCC 2 cut(s) 285, 526
Hin1II CATG 4 cut(s) 404, 453, 565, 634
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 4 cut(s) 51, 101, 114, 461
HphI GGTGA 2 cut(s) 371, 650
Hpy166II GTNNAC 2 cut(s) 55, 494
Hpy188I TCNGA 3 cut(s) 181, 216, 304
Hpy188III TCNNGA 4 cut(s) 105, 133, 266, 374
Hpy8I GTNNAC 2 cut(s) 55, 494
HpyAV CCTTC 3 cut(s) 592, 650, 655
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 3 cut(s) 11, 74, 517
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 523
HpyF3I CTNAG 1 cut(s) 485
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 4 cut(s) 404, 453, 565, 634
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 3 cut(s) 211, 376, 445
LmnI GCTCC 2 cut(s) 578, 601
LpnPI CCDG 9 cut(s) 118, 380, 387, 391, 418, 552, 591, 618, 657
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 273
MalI GATC 3 cut(s) 213, 378, 447
MboI GATC 3 cut(s) 211, 376, 445
MboII GAAGA 4 cut(s) 238, 383, 604, 672
MflI RGATCY 1 cut(s) 445
MlsI TGGCCA 1 cut(s) 285
MluCI AATT 2 cut(s) 63, 198
MluNI TGGCCA 1 cut(s) 285
MlyI GAGTC 3 cut(s) 60, 95, 455
MnlI CCTC 8 cut(s) 71, 101, 140, 353, 451, 472, 568, 600
Mox20I TGGCCA 1 cut(s) 285
MscI TGGCCA 1 cut(s) 285
MseI TTAA 1 cut(s) 566
Msp20I TGGCCA 1 cut(s) 285
MspR9I CCNGG 2 cut(s) 406, 606
MvaI CCWGG 2 cut(s) 406, 606
MwoI GCNNNNNNNGC 2 cut(s) 40, 523
NcoI CCATGG 1 cut(s) 630
NdeI CATATG 1 cut(s) 250
NdeII GATC 3 cut(s) 211, 376, 445
NlaIII CATG 4 cut(s) 404, 453, 565, 634
NlaIV GGNNCC 2 cut(s) 128, 603
NspI RCATGY 1 cut(s) 404
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 1 cut(s) 525
PleI GAGTC 3 cut(s) 59, 95, 455
PpsI GAGTC 3 cut(s) 59, 95, 455
Ppu21I YACGTR 1 cut(s) 274
PpuMI RGGWCCY 1 cut(s) 127
PsiI TTATAA 1 cut(s) 62
Psp5II RGGWCCY 1 cut(s) 127
Psp6I CCWGG 2 cut(s) 404, 604
PspGI CCWGG 2 cut(s) 404, 604
PspN4I GGNNCC 2 cut(s) 128, 603
PspPI GGNCC 2 cut(s) 127, 525
PspPPI RGGWCCY 1 cut(s) 127
PsuI RGATCY 1 cut(s) 445
RsaI GTAC 2 cut(s) 272, 483
RsaNI GTAC 2 cut(s) 271, 482
SaqAI TTAA 1 cut(s) 566
SatI GCNGC 1 cut(s) 524
Sau3AI GATC 3 cut(s) 211, 376, 445
Sau96I GGNCC 2 cut(s) 127, 525
SchI GAGTC 3 cut(s) 60, 95, 455
ScrFI CCNGG 2 cut(s) 406, 606
SetI ASST 8 cut(s) 93, 132, 165, 276, 432, 483, 647, 706
SinI GGWCC 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 2 cut(s) 63, 198
SsiI CCGC 1 cut(s) 523
SspI AATATT 1 cut(s) 585
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 2 cut(s) 404, 604
StyI CCWWGG 1 cut(s) 630
TaaI ACNGT 1 cut(s) 389
TaiI ACGT 1 cut(s) 276
TaqI TCGA 5 cut(s) 36, 153, 471, 531, 706
TaqII GACCGA 1 cut(s) 233
TasI AATT 2 cut(s) 63, 198
TauI GCSGC 1 cut(s) 526
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 1 cut(s) 566
Tru9I TTAA 1 cut(s) 566
TscAI CASTG 2 cut(s) 300, 558
TspDTI ATGAA 5 cut(s) 30, 110, 356, 550, 637
TspRI CASTG 2 cut(s) 300, 558
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 1 cut(s) 198
XceI RCATGY 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 694
XmiI GTMKAC 1 cut(s) 493
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.