Rh5AG388000

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001151
Physical Location & Seq
Reverse (-)
67240619 .. 67241956
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG388000.1

Sequence Viewer

Length: 1338 bp
ATGAAGGGCCTCATCTTCATCTTCATCTCTCTATTCCTATTTTTAGCCTTGAATTTCTCCATTGCAGCTGATACCATATCTCCATCACAATCCATCACCGGCTCGAATACCCTGGTTTCTTCCAACCAGAGATTTGTGCTAGGACTCTTCTCCCCACCCAATTCTAGAGCATGGTATTTAGGACTATGGTACAAGAAATTTCCAGAGGTTGTTGTATGGATTGCAAACAGAGAAAACCCACTTCCAGGTTCAAATGGAGCCTTGACATTATCAGAAAAAGGCACCCTCATCCTTTCAGACCAAACGAACAAGACAATTTGGTTCTCAAATTCTTCCAGAGTAGCCGAAAACCCAGTTGCGCAGCTTTTGGTGACTGGAAATCTTGTTGTCACAGACCAGGCGTCTCCAACAGCAGCAGCAGAGTCCGAAAGCTATGTTTTTCAAAGCTTTGATTTCCCATCAAACACGCTTTTACCAGATATGAAGGTGGGGTGGGACTTCAGAACTGGCCAAAACCATTTCTTGACTAGTTGGAAAAATGCTAGCGATCCCTCCCCTGGAGAATATACCTATAGGATTGAAAACCCTGAGTTGCCTCAGCTTGTTGTCGCTCAAGGATCAAAGAAAGTGTTCAGGACAGGGCCTTGGAATGGTCTTCGATTTACAGGTACTCCTGTTTCGGTTGTTACAACAGCATCATTTTTGGTACCAATCTTTGTCTACAATACCAAGGAGTTGTATTACTCATATGAGGTCACTGATGATTCTATTCTGACAAGAGTGACGCTGACTGAGTCGGGTTTGGCTCAGCGGCTAGTGATGAATGAAGGGAGCAGTGAATGGGCTGTTATGTACACTCTGCAGAACAATCAGTGTGATGATTATGGTCAGTGTGGACCAAATGGCATTTGCAAGATTTACAAATCACCCATTTGTGAATGCTTGCAGGGGTTTGTTCCCAAATCTCCAAAGGAATGGGAGTTTCTTAACTGGACAACCGGGTGCACGAGGAGGACAGCACTGCATTGTGAGAGAGGGGAAGGATTTGTGAAAGTTAATAATGTGAAACTGCCGGACTTGTTGGATTTTCGGGTGAACAAAACCATGCTCCGCGGAGAGGAATGTGAGGCAGAGTGTTTGAGGAACTGCTCCTGTATGGCTTATGCCAATTCGAACATAACCAATGGAGGCAAAGGATGTCTTATGTGGTTTGGCAAGCTGATTGATATGCGGGAGATCGTTGAAGATAGTGACCAGATATATATTCGGATGCTAGCTTCCGAACTAGGTAAGCGACCTAATTTCTCTAATAGTGTTAATTGGTTCCTGATTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

445

Amino Acids

49.93

Weight (kDa)

5.7

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 71 - 179 1.1e-32 D-mannose binding lectin
S_locus_glycop PF00954 211 - 322 2e-28 S-locus glycoprotein domain
PAN_2 PF08276 343 - 410 2.3e-20 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 360
Acc65I GGTACC 1 cut(s) 706
AccB1I GGYRCC 2 cut(s) 281, 706
AccI GTMKAC 1 cut(s) 720
AccII CGCG 1 cut(s) 1113
AciI CCGC 4 cut(s) 811, 1111, 1113, 1231
AclWI GGATC 2 cut(s) 542, 625
AcoI YGGCCR 1 cut(s) 508
AcsI RAATTY 3 cut(s) 52, 197, 328
AcuI CTGAAG 1 cut(s) 484
AcyI GRCGYC 1 cut(s) 401
AfaI GTAC 4 cut(s) 191, 670, 708, 854
AfiI CCNNNNNNNGG 4 cut(s) 245, 557, 650, 1117
AgsI TTSAA 5 cut(s) 52, 252, 443, 581, 1244
AhdI GACNNNNNGTC 1 cut(s) 400
AhlI ACTAGT 1 cut(s) 527
AjnI CCWGG 4 cut(s) 111, 244, 396, 556
AluBI AGCT 7 cut(s) 68, 364, 432, 447, 601, 1219, 1277
AluI AGCT 7 cut(s) 68, 364, 432, 447, 601, 1219, 1277
Alw21I GWGCWC 1 cut(s) 1007
Alw26I GTCTC 1 cut(s) 408
Alw44I GTGCAC 1 cut(s) 1003
AlwI GGATC 2 cut(s) 542, 625
AoxI GGCC 3 cut(s) 7, 508, 641
ApaLI GTGCAC 1 cut(s) 1003
ApeKI GCWGC 4 cut(s) 65, 361, 413, 416
ApoI RAATTY 3 cut(s) 52, 197, 328
Asp700I GAANNNNTTC 1 cut(s) 629
Asp718I GGTACC 1 cut(s) 706
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 3 cut(s) 7, 641, 896
AsuC2I CCSGG 1 cut(s) 1000
AsuHPI GGTGA 4 cut(s) 88, 382, 918, 1105
AsuII TTCGAA 1 cut(s) 1172
AsuNHI GCTAGC 2 cut(s) 542, 1273
AvaII GGWCC 1 cut(s) 896
BaeGI GKGCMC 1 cut(s) 1007
BaeI ACNNNNGTAYC 2 cut(s) 660, 693
BalI TGGCCA 1 cut(s) 510
BanI GGYRCC 2 cut(s) 281, 706
BauI CACGAG 1 cut(s) 1006
BbsI GAAGAC 1 cut(s) 647
Bbv12I GWGCWC 1 cut(s) 1007
BbvCI CCTCAGC 1 cut(s) 597
BbvI GCAGC 4 cut(s) 77, 373, 425, 428
BccI CCATC 3 cut(s) 91, 101, 466
BciT130I CCWGG 4 cut(s) 113, 246, 398, 558
BcnI CCSGG 1 cut(s) 1000
BcoDI GTCTC 1 cut(s) 408
BcuI ACTAGT 1 cut(s) 527
BfaI CTAG 7 cut(s) 140, 165, 528, 543, 815, 1274, 1286
BfmI CTRYAG 2 cut(s) 571, 860
BisI GCNGC 5 cut(s) 66, 362, 414, 417, 812
BlpI GCTNAGC 1 cut(s) 807
BlsI GCNGC 5 cut(s) 67, 363, 415, 418, 813
Bme1390I CCNGG 5 cut(s) 113, 246, 398, 558, 1000
Bme18I GGWCC 1 cut(s) 896
BmeRI GACNNNNNGTC 1 cut(s) 400
BmgT120I GGNCC 3 cut(s) 7, 641, 896
BmiI GGNNCC 4 cut(s) 259, 283, 708, 1325
BmrFI CCNGG 5 cut(s) 113, 246, 398, 558, 1000
BmrI ACTGGG 1 cut(s) 347
BmsI GCATC 2 cut(s) 704, 1260
BmtI GCTAGC 2 cut(s) 546, 1277
BmuI ACTGGG 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 647
BpmI CTGGAG 1 cut(s) 579
Bpu10I CCTNAGC 1 cut(s) 597
Bpu1102I GCTNAGC 1 cut(s) 807
Bpu14I TTCGAA 1 cut(s) 1172
BpuEI CTTGAG 1 cut(s) 597
BpuMI CCSGG 1 cut(s) 1000
BsaHI GRCGYC 1 cut(s) 401
BsaJI CCNNGG 5 cut(s) 111, 556, 644, 729, 1111
BsaXI ACNNNNNCTCC 4 cut(s) 64, 94, 655, 685
Bsc4I CCNNNNNNNGG 4 cut(s) 245, 557, 650, 1117
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 4 cut(s) 353, 379, 511, 995
Bse3DI GCAATG 1 cut(s) 60
BseBI CCWGG 4 cut(s) 113, 246, 398, 558
BseDI CCNNGG 5 cut(s) 111, 556, 644, 729, 1111
BseGI GGATG 3 cut(s) 288, 1202, 1275
BseLI CCNNNNNNNGG 4 cut(s) 245, 557, 650, 1117
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 4 cut(s) 579, 611, 783, 821
BseNI ACTGG 4 cut(s) 353, 379, 511, 995
BseRI GAGGAG 1 cut(s) 1024
BseSI GKGCMC 1 cut(s) 1007
BseXI GCAGC 4 cut(s) 77, 373, 425, 428
Bsh1236I CGCG 1 cut(s) 1113
BshFI GGCC 3 cut(s) 9, 510, 643
BshNI GGYRCC 2 cut(s) 281, 706
BsiHKAI GWGCWC 1 cut(s) 1007
BsiSI CCGG 3 cut(s) 99, 999, 1073
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 4 cut(s) 245, 557, 650, 1117
BsmAI GTCTC 1 cut(s) 408
BsmBI CGTCTC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 509
BsmI GAATGC 1 cut(s) 944
BsnI GGCC 3 cut(s) 9, 510, 643
Bsp119I TTCGAA 1 cut(s) 1172
Bsp1286I GDGCHC 1 cut(s) 1007
Bsp1407I TGTACA 1 cut(s) 852
Bsp143I GATC 3 cut(s) 547, 617, 1236
Bsp1720I GCTNAGC 1 cut(s) 807
BspACI CCGC 4 cut(s) 811, 1111, 1113, 1231
BspANI GGCC 3 cut(s) 9, 510, 643
BspCNI CTCAG 4 cut(s) 580, 610, 784, 820
BspFNI CGCG 1 cut(s) 1113
BspLI GGNNCC 4 cut(s) 259, 283, 708, 1325
BspMAI CTGCAG 1 cut(s) 864
BspOI GCTAGC 2 cut(s) 546, 1277
BspPI GGATC 2 cut(s) 542, 625
BspT104I TTCGAA 1 cut(s) 1172
BspT107I GGYRCC 2 cut(s) 281, 706
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 852
BsrI ACTGG 4 cut(s) 353, 379, 511, 995
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 5 cut(s) 111, 556, 644, 729, 1111
BssMI GATC 3 cut(s) 547, 617, 1236
BssNI GRCGYC 1 cut(s) 401
BssSI CACGAG 1 cut(s) 1006
BssT1I CCWWGG 2 cut(s) 644, 729
Bst2BI CACGAG 1 cut(s) 1006
Bst2UI CCWGG 4 cut(s) 113, 246, 398, 558
Bst6I CTCTTC 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 401
BstAUI TGTACA 1 cut(s) 852
BstBI TTCGAA 1 cut(s) 1172
BstC8I GCNNGC 4 cut(s) 544, 944, 1217, 1275
BstDEI CTNAG 4 cut(s) 588, 597, 792, 807
BstDSI CCRYGG 1 cut(s) 1111
BstF5I GGATG 3 cut(s) 288, 1202, 1275
BstFNI CGCG 1 cut(s) 1113
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 3 cut(s) 550, 620, 1239
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 3 cut(s) 547, 617, 1236
BstNI CCWGG 4 cut(s) 113, 246, 398, 558
BstSCI CCNGG 5 cut(s) 111, 244, 396, 556, 998
BstSFI CTRYAG 2 cut(s) 571, 860
BstSLI GKGCMC 1 cut(s) 1007
BstUI CGCG 1 cut(s) 1113
BstV1I GCAGC 4 cut(s) 77, 373, 425, 428
BstV2I GAAGAC 1 cut(s) 647
BstXI CCANNNNNNTGG 1 cut(s) 975
BsuRI GGCC 3 cut(s) 9, 510, 643
BtgI CCRYGG 1 cut(s) 1111
BtsCI GGATG 3 cut(s) 288, 1202, 1275
BtsI GCAGTG 2 cut(s) 841, 1019
BtsIMutI CAGTG 5 cut(s) 756, 841, 878, 896, 1019
Cac8I GCNNGC 4 cut(s) 544, 944, 1217, 1275
CfoI GCGC 1 cut(s) 361
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 3 cut(s) 7, 641, 896
Cfr42I CCGCGG 1 cut(s) 1114
CseI GACGC 2 cut(s) 390, 793
Csp6I GTAC 4 cut(s) 190, 669, 707, 853
CviAII CATG 2 cut(s) 171, 1105
CviQI GTAC 4 cut(s) 190, 669, 707, 853
DdeI CTNAG 4 cut(s) 588, 597, 792, 807
DpnI GATC 3 cut(s) 549, 619, 1238
DpnII GATC 3 cut(s) 547, 617, 1236
DriI GACNNNNNGTC 1 cut(s) 400
EaeI YGGCCR 1 cut(s) 508
Eam1104I CTCTTC 1 cut(s) 152
Eam1105I GACNNNNNGTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 152
Eco130I CCWWGG 2 cut(s) 644, 729
Eco47I GGWCC 1 cut(s) 896
Eco57I CTGAAG 1 cut(s) 484
EcoO109I RGGNCCY 2 cut(s) 7, 641
EcoRII CCWGG 4 cut(s) 111, 244, 396, 556
EcoT14I CCWWGG 2 cut(s) 644, 729
ErhI CCWWGG 2 cut(s) 644, 729
Esp3I CGTCTC 1 cut(s) 408
FaeI CATG 2 cut(s) 174, 1108
FalI AAGNNNNNCTT 2 cut(s) 1185, 1217
FaqI GGGAC 1 cut(s) 509
FatI CATG 2 cut(s) 170, 1104
FauI CCCGC 1 cut(s) 1224
FauNDI CATATG 1 cut(s) 748
FblI GTMKAC 1 cut(s) 720
Fnu4HI GCNGC 5 cut(s) 66, 362, 414, 417, 812
FokI GGATG 3 cut(s) 275, 1209, 1282
Fsp4HI GCNGC 5 cut(s) 66, 362, 414, 417, 812
FspBI CTAG 7 cut(s) 140, 165, 528, 543, 815, 1274, 1286
FspI TGCGCA 1 cut(s) 360
GlaI GCGC 1 cut(s) 360
GluI GCNGC 5 cut(s) 66, 362, 414, 417, 812
GsuI CTGGAG 1 cut(s) 579
HaeIII GGCC 3 cut(s) 9, 510, 643
HapII CCGG 3 cut(s) 99, 999, 1073
HgaI GACGC 2 cut(s) 390, 793
HhaI GCGC 1 cut(s) 361
Hin1I GRCGYC 1 cut(s) 401
Hin1II CATG 2 cut(s) 174, 1108
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HindIII AAGCTT 1 cut(s) 445
HinfI GANTC 4 cut(s) 144, 422, 764, 794
HpaII CCGG 3 cut(s) 99, 999, 1073
HphI GGTGA 4 cut(s) 88, 382, 918, 1105
Hpy166II GTNNAC 5 cut(s) 721, 855, 896, 1005, 1096
Hpy188I TCNGA 7 cut(s) 274, 298, 427, 503, 774, 1269, 1282
Hpy188III TCNNGA 6 cut(s) 165, 203, 336, 523, 634, 1327
Hpy8I GTNNAC 5 cut(s) 721, 855, 896, 1005, 1096
HpyAV CCTTC 3 cut(s) 478, 821, 1034
HpyCH4V TGCA 7 cut(s) 65, 224, 862, 912, 946, 1005, 1024
HpyF3I CTNAG 4 cut(s) 588, 597, 792, 807
Hsp92I GRCGYC 1 cut(s) 401
Hsp92II CATG 2 cut(s) 174, 1108
HspAI GCGC 1 cut(s) 359
KpnI GGTACC 1 cut(s) 710
KspI CCGCGG 1 cut(s) 1114
Kzo9I GATC 3 cut(s) 547, 617, 1236
LmnI GCTCC 4 cut(s) 257, 831, 1113, 1154
Lsp1109I GCAGC 4 cut(s) 77, 373, 425, 428
LweI GCATC 2 cut(s) 704, 1260
MaeI CTAG 7 cut(s) 140, 165, 528, 543, 815, 1274, 1286
MaeIII GTNAC 6 cut(s) 370, 388, 685, 754, 781, 1250
MalI GATC 3 cut(s) 549, 619, 1238
MboI GATC 3 cut(s) 547, 617, 1236
MboII GAAGA 7 cut(s) 7, 13, 111, 139, 324, 647, 1256
MhlI GDGCHC 1 cut(s) 1007
MlsI TGGCCA 1 cut(s) 510
MluCI AATT 8 cut(s) 52, 160, 197, 315, 328, 1168, 1300, 1318
MluNI TGGCCA 1 cut(s) 510
MlyI GAGTC 3 cut(s) 138, 431, 803
MmeI TCCRAC 4 cut(s) 147, 431, 512, 1062
Mox20I TGGCCA 1 cut(s) 510
MroXI GAANNNNTTC 1 cut(s) 629
MscI TGGCCA 1 cut(s) 510
MseI TTAA 3 cut(s) 987, 1056, 1317
Msp20I TGGCCA 1 cut(s) 510
MspA1I CMGCKG 3 cut(s) 68, 811, 1113
MspI CCGG 3 cut(s) 99, 999, 1073
MspR9I CCNGG 5 cut(s) 113, 246, 398, 558, 1000
Mva1269I GAATGC 1 cut(s) 944
MvaI CCWGG 4 cut(s) 113, 246, 398, 558
MvnI CGCG 1 cut(s) 1113
NciI CCSGG 1 cut(s) 1000
NdeI CATATG 1 cut(s) 748
NdeII GATC 3 cut(s) 547, 617, 1236
NheI GCTAGC 2 cut(s) 542, 1273
NlaIII CATG 2 cut(s) 174, 1108
NlaIV GGNNCC 4 cut(s) 259, 283, 708, 1325
NmuCI GTSAC 5 cut(s) 370, 388, 754, 781, 1250
NsbI TGCGCA 1 cut(s) 360
NspV TTCGAA 1 cut(s) 1172
PctI GAATGC 1 cut(s) 944
PdmI GAANNNNTTC 1 cut(s) 629
PfeI GAWTC 1 cut(s) 764
PflFI GACNNNGTC 1 cut(s) 793
PkrI GCNGC 5 cut(s) 67, 363, 415, 418, 813
PleI GAGTC 3 cut(s) 138, 430, 802
PpsI GAGTC 3 cut(s) 138, 430, 802
Psp6I CCWGG 4 cut(s) 111, 244, 396, 556
PspGI CCWGG 4 cut(s) 111, 244, 396, 556
PspN4I GGNNCC 4 cut(s) 259, 283, 708, 1325
PspPI GGNCC 3 cut(s) 7, 641, 896
PstI CTGCAG 1 cut(s) 864
PsyI GACNNNGTC 1 cut(s) 793
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 4 cut(s) 191, 670, 708, 854
RsaNI GTAC 4 cut(s) 190, 669, 707, 853
SacII CCGCGG 1 cut(s) 1114
SaqAI TTAA 3 cut(s) 987, 1056, 1317
SatI GCNGC 5 cut(s) 66, 362, 414, 417, 812
Sau3AI GATC 3 cut(s) 547, 617, 1236
Sau96I GGNCC 3 cut(s) 7, 641, 896
SchI GAGTC 3 cut(s) 138, 431, 803
ScrFI CCNGG 5 cut(s) 113, 246, 398, 558, 1000
SduI GDGCHC 1 cut(s) 1007
SfaNI GCATC 2 cut(s) 704, 1260
SfcI CTRYAG 2 cut(s) 571, 860
Sfr303I CCGCGG 1 cut(s) 1114
SfuI TTCGAA 1 cut(s) 1172
SgrBI CCGCGG 1 cut(s) 1114
SinI GGWCC 1 cut(s) 896
SmlI CTYRAG 1 cut(s) 612
SmoI CTYRAG 1 cut(s) 612
SpeI ACTAGT 1 cut(s) 527
Sse9I AATT 8 cut(s) 52, 160, 197, 315, 328, 1168, 1300, 1318
SsiI CCGC 4 cut(s) 811, 1111, 1113, 1231
SspMI CTAG 7 cut(s) 140, 165, 528, 543, 815, 1274, 1286
StyD4I CCNGG 5 cut(s) 111, 244, 396, 556, 998
StyI CCWWGG 2 cut(s) 644, 729
TaqI TCGA 3 cut(s) 104, 658, 1172
TasI AATT 8 cut(s) 52, 160, 197, 315, 328, 1168, 1300, 1318
TatI WGTACW 1 cut(s) 852
TauI GCSGC 1 cut(s) 814
TfiI GAWTC 1 cut(s) 764
Tru1I TTAA 3 cut(s) 987, 1056, 1317
Tru9I TTAA 3 cut(s) 987, 1056, 1317
TscAI CASTG 5 cut(s) 763, 841, 878, 896, 1026
TseFI GTSAC 5 cut(s) 370, 388, 754, 781, 1250
TseI GCWGC 4 cut(s) 65, 361, 413, 416
Tsp45I GTSAC 5 cut(s) 370, 388, 754, 781, 1250
TspDTI ATGAA 6 cut(s) 7, 13, 17, 497, 836, 840
TspRI CASTG 5 cut(s) 763, 841, 878, 896, 1026
Tth111I GACNNNGTC 1 cut(s) 793
VneI GTGCAC 1 cut(s) 1003
VpaK11BI GGWCC 1 cut(s) 896
XapI RAATTY 3 cut(s) 52, 197, 328
XbaI TCTAGA 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 720
XmnI GAANNNNTTC 1 cut(s) 629
XspI CTAG 7 cut(s) 140, 165, 528, 543, 815, 1274, 1286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.