Rh5CG280800

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001151
Physical Location & Seq
Reverse (-)
30635046 .. 30636902
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG280800.1

Sequence Viewer

Length: 1327 bp
ATGAAGCTTGTCCAAACCCAGAAAAGCAGCTGTGTCTCCTCAAAAACAAGGGAGGTGGCTGCAACCCTGCAAGCTGACACCCTAGCTGCATCGCAATCCATAGTCGGCTCTGATACCTTGGTTTCTTCCAGCCAAAGCTTTGAACTGGGACTTTTTCCACAGGCAACTCTAGAGCATGATTCTTATGGAGCTATGATGTTGTCCAAAAATGGAAGTTTAGTCCTTTTAGACCAAATGAATAGAACTATTTGGTCTTCTAGTCCTTCCAAAGAAGCTGAAGATCCTGTTGCACAGCTTTTGGAAACTGGAAACCTTGTTGTAGTAGACAAGGCTGTGACAAGTTCCGAAAGCTATATATGGCAAAGTTTTGAATTCCCATCGGACACACTGCTACCAGGAATGAGGCTGCGATTGAACTTCAAAACAGGCCCAAACCAATTCTTGACATCTTGGAAAAATGCTAGTGACCCGTCTCTTGGATTATATACCTATAAGATTGATCACCTTGTGTTGCCTCAGCTTGTTCTTGCTCAAGGATCAAAGAAAGAATTCCGCAGTGGACCTTGGAATGGTCTTCGATTTACTGGTCTTCCTGTTTCAAGCAACGAAATTTTGAAACCAAGTTATGTTTATAACACAAATGAGTTGTATTATATCTATGAGGCTAATGACAATTCTATTATTACCCGATTAAAGCTGACTGAAACAGGTGAGATGCAACGGCTAGTGCTGAATAAAGGAAGTACTGAATGGGGTGTTATGTATACTTTGCAGAATGATCGATGCGACAATTATGGGGAGTGTGGTGCAAATAGCATATGCAAAATTAACAGAACACCCATTTGTGAGTGCTTACAGGGGTTTGTTCCAAAATCACAGCAAGAATGGGAGGTTCTTAATAGGACAAGTGGTTGCAAGAGAAAGACCCTATTGGATTGCCAGAAGGGGGAAGGGTTTTTGAAATTTCAAAATATGAAACTTCCAGACCTGTTGGATTTTTTGGTGAACAACAGCATGAGCTTCAAGGAATGTGAGGCAGAGTGTATGAAGAATTGTTCTTGTGTAGCTTATGCTAAATCAAATATGAGTAGTGGAGGCATTGGCTGTCTGATGTGGTTCGGGGAGCTTATAGATATGCGTGAGTTCGTTGATGAAGTTAGTGATCAAGATTTATATATTCGGATGCCAGCTTCAGAACTAGGCAATAGTACCAGTCAGAAGGATAAAAGAGTAGTATTAATCTCAGTGATATCAGCAGCTCCTGTACTTCTTTTTCTGGGTCTCTTATGCCGTTGTATCGTTCTGAATAAGAGAGCAAAGAGAAAGG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

442

Amino Acids

49.32

Weight (kDa)

6.75

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 59 - 152 4.6e-27 D-mannose binding lectin
S_locus_glycop PF00954 184 - 292 3.5e-28 S-locus glycoprotein domain
PAN_2 PF08276 313 - 379 9.5e-21 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 633
AccI GTMKAC 2 cut(s) 324, 764
AciI CCGC 1 cut(s) 553
AclWI GGATC 2 cut(s) 275, 544
AcsI RAATTY 4 cut(s) 371, 548, 609, 962
AcuI CTGAAG 2 cut(s) 297, 1176
AdeI CACNNNGTG 1 cut(s) 508
AfaI GTAC 3 cut(s) 745, 1210, 1266
AfiI CCNNNNNNNGG 3 cut(s) 476, 569, 946
AgsI TTSAA 9 cut(s) 143, 371, 415, 421, 600, 616, 961, 968, 1024
AjnI CCWGG 1 cut(s) 394
Alw26I GTCTC 3 cut(s) 40, 477, 1286
AlwI GGATC 2 cut(s) 275, 544
AlwNI CAGNNNCTG 1 cut(s) 1262
AoxI GGCC 1 cut(s) 427
ApeKI GCWGC 5 cut(s) 27, 59, 86, 406, 1256
ApoI RAATTY 4 cut(s) 371, 548, 609, 962
AseI ATTAAT 1 cut(s) 1238
Asp700I GAANNNNTTC 1 cut(s) 548
AspS9I GGNCC 2 cut(s) 428, 560
AsuHPI GGTGA 3 cut(s) 494, 722, 1015
AvaII GGWCC 1 cut(s) 560
BaeI ACNNNNGTAYC 2 cut(s) 105, 138
BbsI GAAGAC 3 cut(s) 246, 566, 581
BbvCI CCTCAGC 1 cut(s) 516
BbvI GCAGC 5 cut(s) 39, 46, 73, 393, 1268
BccI CCATC 1 cut(s) 385
BceAI ACGGC 2 cut(s) 737, 1275
BcgI CGANNNNNNTGC 2 cut(s) 761, 795
BciT130I CCWGG 1 cut(s) 396
BclI TGATCA 2 cut(s) 499, 1162
BcoDI GTCTC 3 cut(s) 40, 477, 1286
BfaI CTAG 6 cut(s) 83, 170, 258, 462, 725, 1199
BisI GCNGC 5 cut(s) 28, 60, 87, 407, 1257
BlsI GCNGC 5 cut(s) 29, 61, 88, 408, 1258
BmcAI AGTACT 1 cut(s) 745
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 1 cut(s) 560
BmgT120I GGNCC 2 cut(s) 428, 560
BmrFI CCNGG 1 cut(s) 396
BmrI ACTGGG 1 cut(s) 155
BmsI GCATC 4 cut(s) 98, 705, 773, 1173
BmuI ACTGGG 1 cut(s) 155
BpiI GAAGAC 3 cut(s) 246, 566, 581
Bpu10I CCTNAGC 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 516
Bsa29I ATCGAT 1 cut(s) 781
BsaI GGTCTC 1 cut(s) 1286
BsaJI CCNNGG 2 cut(s) 117, 563
Bsc4I CCNNNNNNNGG 3 cut(s) 476, 569, 946
Bse1I ACTGG 4 cut(s) 150, 310, 589, 1212
BseBI CCWGG 1 cut(s) 396
BseCI ATCGAT 1 cut(s) 781
BseDI CCNNGG 2 cut(s) 117, 563
BseGI GGATG 1 cut(s) 1188
BseLI CCNNNNNNNGG 3 cut(s) 476, 569, 946
BseMII CTCAG 2 cut(s) 530, 1257
BseNI ACTGG 4 cut(s) 150, 310, 589, 1212
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 5 cut(s) 39, 46, 73, 393, 1268
BshFI GGCC 1 cut(s) 429
BshVI ATCGAT 1 cut(s) 781
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 3 cut(s) 476, 569, 946
BsmAI GTCTC 3 cut(s) 40, 477, 1286
BsmBI CGTCTC 1 cut(s) 477
BsmFI GGGAC 1 cut(s) 162
BsnI GGCC 1 cut(s) 429
Bso31I GGTCTC 1 cut(s) 1286
Bsp143I GATC 5 cut(s) 280, 499, 536, 778, 1162
BspACI CCGC 1 cut(s) 553
BspANI GGCC 1 cut(s) 429
BspCNI CTCAG 2 cut(s) 529, 1256
BspDI ATCGAT 1 cut(s) 781
BspPI GGATC 2 cut(s) 275, 544
BspTNI GGTCTC 1 cut(s) 1286
BsrI ACTGG 4 cut(s) 150, 310, 589, 1212
BssECI CCNNGG 2 cut(s) 117, 563
BssMI GATC 5 cut(s) 280, 499, 536, 778, 1162
BssNAI GTATAC 1 cut(s) 765
BssT1I CCWWGG 2 cut(s) 117, 563
Bst1107I GTATAC 1 cut(s) 765
Bst2UI CCWGG 1 cut(s) 396
BstC8I GCNNGC 2 cut(s) 72, 1188
BstDEI CTNAG 2 cut(s) 516, 1243
BstF5I GGATG 1 cut(s) 1188
BstKTI GATC 5 cut(s) 283, 502, 539, 781, 1165
BstMAI GTCTC 3 cut(s) 40, 477, 1286
BstMBI GATC 5 cut(s) 280, 499, 536, 778, 1162
BstNI CCWGG 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 394
BstV1I GCAGC 5 cut(s) 39, 46, 73, 393, 1268
BstV2I GAAGAC 3 cut(s) 246, 566, 581
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BstZ17I GTATAC 1 cut(s) 765
Bsu15I ATCGAT 1 cut(s) 781
BsuRI GGCC 1 cut(s) 429
BsuTUI ATCGAT 1 cut(s) 781
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 1188
BtsI GCAGTG 2 cut(s) 386, 562
BtsIMutI CAGTG 3 cut(s) 386, 562, 1251
Cac8I GCNNGC 2 cut(s) 72, 1188
CaiI CAGNNNCTG 1 cut(s) 1262
Cfr13I GGNCC 2 cut(s) 428, 560
ClaI ATCGAT 1 cut(s) 781
Csp6I GTAC 3 cut(s) 744, 1209, 1265
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 2 cut(s) 176, 1015
CviQI GTAC 3 cut(s) 744, 1209, 1265
DdeI CTNAG 2 cut(s) 516, 1243
DpnI GATC 5 cut(s) 282, 501, 538, 780, 1164
DpnII GATC 5 cut(s) 280, 499, 536, 778, 1162
DraIII CACNNNGTG 1 cut(s) 508
Eco130I CCWWGG 2 cut(s) 117, 563
Eco31I GGTCTC 1 cut(s) 1286
Eco32I GATATC 1 cut(s) 1251
Eco47I GGWCC 1 cut(s) 560
Eco57I CTGAAG 2 cut(s) 297, 1176
EcoRI GAATTC 2 cut(s) 371, 548
EcoRII CCWGG 1 cut(s) 394
EcoRV GATATC 1 cut(s) 1251
EcoT14I CCWWGG 2 cut(s) 117, 563
ErhI CCWWGG 2 cut(s) 117, 563
Esp3I CGTCTC 1 cut(s) 477
FaeI CATG 2 cut(s) 179, 1018
FaqI GGGAC 1 cut(s) 162
FatI CATG 2 cut(s) 175, 1014
FauNDI CATATG 1 cut(s) 818
FbaI TGATCA 2 cut(s) 499, 1162
FblI GTMKAC 2 cut(s) 324, 764
Fnu4HI GCNGC 5 cut(s) 28, 60, 87, 407, 1257
FokI GGATG 1 cut(s) 1195
Fsp4HI GCNGC 5 cut(s) 28, 60, 87, 407, 1257
FspBI CTAG 6 cut(s) 83, 170, 258, 462, 725, 1199
GluI GCNGC 5 cut(s) 28, 60, 87, 407, 1257
HaeIII GGCC 1 cut(s) 429
Hin1II CATG 2 cut(s) 179, 1018
HindIII AAGCTT 2 cut(s) 5, 136
HinfI GANTC 1 cut(s) 179
HphI GGTGA 3 cut(s) 494, 722, 1015
Hpy166II GTNNAC 4 cut(s) 325, 560, 765, 1006
Hpy188I TCNGA 8 cut(s) 112, 346, 382, 1110, 1182, 1195, 1218, 1305
Hpy188III TCNNGA 4 cut(s) 170, 442, 983, 1166
Hpy8I GTNNAC 4 cut(s) 325, 560, 765, 1006
HpyAV CCTTC 4 cut(s) 273, 937, 944, 1213
HpyCH4V TGCA 9 cut(s) 62, 70, 89, 290, 718, 772, 809, 822, 915
HpyF3I CTNAG 2 cut(s) 516, 1243
Hsp92II CATG 2 cut(s) 179, 1018
Ksp22I TGATCA 2 cut(s) 499, 1162
Kzo9I GATC 5 cut(s) 280, 499, 536, 778, 1162
LmnI GCTCC 3 cut(s) 188, 1123, 1264
Lsp1109I GCAGC 5 cut(s) 39, 46, 73, 393, 1268
LweI GCATC 4 cut(s) 98, 705, 773, 1173
MaeI CTAG 6 cut(s) 83, 170, 258, 462, 725, 1199
MaeIII GTNAC 2 cut(s) 334, 464
MalI GATC 5 cut(s) 282, 501, 538, 780, 1164
MboI GATC 5 cut(s) 280, 499, 536, 778, 1162
MboII GAAGA 6 cut(s) 117, 246, 290, 566, 581, 1060
MflI RGATCY 1 cut(s) 280
MluCI AATT 9 cut(s) 371, 437, 548, 609, 673, 790, 825, 962, 1051
MmeI TCCRAC 1 cut(s) 972
MnlI CCTC 8 cut(s) 46, 49, 396, 525, 655, 883, 1027, 1088
MroXI GAANNNNTTC 1 cut(s) 548
MseI TTAA 4 cut(s) 692, 828, 897, 1238
MspA1I CMGCKG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 396
NdeI CATATG 1 cut(s) 818
NdeII GATC 5 cut(s) 280, 499, 536, 778, 1162
NlaIII CATG 2 cut(s) 179, 1018
NmuCI GTSAC 2 cut(s) 334, 464
PdmI GAANNNNTTC 1 cut(s) 548
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 5 cut(s) 29, 61, 88, 408, 1258
PshBI ATTAAT 1 cut(s) 1238
PsiI TTATAA 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspPI GGNCC 2 cut(s) 428, 560
PstNI CAGNNNCTG 1 cut(s) 1262
PsuI RGATCY 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 30
RsaI GTAC 3 cut(s) 745, 1210, 1266
RsaNI GTAC 3 cut(s) 744, 1209, 1265
SaqAI TTAA 4 cut(s) 692, 828, 897, 1238
SatI GCNGC 5 cut(s) 28, 60, 87, 407, 1257
Sau3AI GATC 5 cut(s) 280, 499, 536, 778, 1162
Sau96I GGNCC 2 cut(s) 428, 560
ScaI AGTACT 1 cut(s) 745
ScrFI CCNGG 1 cut(s) 396
SfaNI GCATC 4 cut(s) 98, 705, 773, 1173
SinI GGWCC 1 cut(s) 560
SmlI CTYRAG 1 cut(s) 531
SmoI CTYRAG 1 cut(s) 531
Sse9I AATT 9 cut(s) 371, 437, 548, 609, 673, 790, 825, 962, 1051
SsiI CCGC 1 cut(s) 553
SspMI CTAG 6 cut(s) 83, 170, 258, 462, 725, 1199
StyD4I CCNGG 1 cut(s) 394
StyI CCWWGG 2 cut(s) 117, 563
TaqI TCGA 2 cut(s) 577, 781
TasI AATT 9 cut(s) 371, 437, 548, 609, 673, 790, 825, 962, 1051
TatI WGTACW 2 cut(s) 743, 1264
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 4 cut(s) 692, 828, 897, 1238
Tru9I TTAA 4 cut(s) 692, 828, 897, 1238
TscAI CASTG 3 cut(s) 393, 562, 1251
TseFI GTSAC 2 cut(s) 334, 464
TseI GCWGC 5 cut(s) 27, 59, 86, 406, 1256
Tsp45I GTSAC 2 cut(s) 334, 464
TspDTI ATGAA 5 cut(s) 17, 251, 989, 1061, 1167
TspRI CASTG 3 cut(s) 393, 562, 1251
VpaK11BI GGWCC 1 cut(s) 560
VspI ATTAAT 1 cut(s) 1238
XapI RAATTY 4 cut(s) 371, 548, 609, 962
XbaI TCTAGA 1 cut(s) 169
XmiI GTMKAC 2 cut(s) 324, 764
XmnI GAANNNNTTC 1 cut(s) 548
XspI CTAG 6 cut(s) 83, 170, 258, 462, 725, 1199
ZrmI AGTACT 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.