Rmu_sc0000375.1_g000019

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000375.1
OG0001853
Physical Location & Seq
Reverse (-)
76062 .. 77165
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1017 bp
atgcatgaacttgtggaacagctgtggaataaagtactgacattagaaattgattcaaagataagcgattttattcgagcaccctctcgcttactgtttagtgctgccgaattagggaacattgactttctgattatacttatgagatcataccccaatcttatttggaaacttgatgagcaaaatcgaagcatattccacactgcagtggttcacaggcaggagaaagttttcagcctcatttatgaattaggtggaataaaagatttgatagcatcttataaagatgatgacgataataatatgcttcatttggctgcaaagcttgcacctgccaatcgtttggatgctgatattggagcagcattgcaattgagaagagagttgcattggtttaaggaagtggagaagattgttcaaccattatatagagaaatgaggaactctgatggaaaaacacctcaagctctattcactgaggaacacaaggaattattaagagaaggtgaaaagtggatgaaaggcactgcatcatcatgtatggtggttgcgacgctcattgccactgtaatgtttgctgtttcctcaactgttcctggtggctacaacaatgcaactggccttccaatattccttaaatcaaaggtcttcattgtttttgccatatcagatgcagtatcactcatctcctctgctacttcaatcttgagttttctatcgatacttacatcacgatatactgaaggagatttcctccacttattaccaaaacaattgattgtggggcttgcaacacttttcatctctatagctaccatgatgatcacattcgttgcctctctagttatcgtacttggtcacgggtttatagggataaaggttccaatagctttggtcgctggcattccagttagtctttatgctttgcttcaatttcctcttcttgctgagatgatcagtcaagcatatctttcaagactttcttttcgtcgtagtaaccttctgttgcagaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

338

Amino Acids

37.78

Weight (kDa)

7.84

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 170 - 284 1.6e-24 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
AarI CACCTGC 1 cut(s) 340
Acc36I ACCTGC 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 762
AfaI GTAC 2 cut(s) 36, 852
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 5 cut(s) 57, 419, 702, 932, 975
AjnI CCWGG 1 cut(s) 595
AleI CACNNNNGTG 1 cut(s) 206
AluBI AGCT 5 cut(s) 22, 325, 467, 812, 890
AluI AGCT 5 cut(s) 22, 325, 467, 812, 890
Alw21I GWGCWC 1 cut(s) 82
AoxI GGCC 1 cut(s) 619
ApeKI GCWGC 3 cut(s) 104, 317, 362
ArsI GACNNNNNNTTYG 2 cut(s) 969, 1001
Asp700I GAANNNNTTC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 640
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 91, 304, 374
BccI CCATC 1 cut(s) 443
BciT130I CCWGG 1 cut(s) 597
BclI TGATCA 2 cut(s) 822, 954
BfaI CTAG 1 cut(s) 842
BfmI CTRYAG 2 cut(s) 204, 807
BfuAI ACCTGC 1 cut(s) 340
BisI GCNGC 3 cut(s) 105, 318, 363
BlsI GCNGC 3 cut(s) 106, 319, 364
BmcAI AGTACT 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 597
BmiI GGNNCC 1 cut(s) 882
BmrFI CCNGG 1 cut(s) 597
BmsI GCATC 4 cut(s) 284, 337, 539, 661
BpiI GAAGAC 1 cut(s) 640
BplI GAGNNNNNCTC 2 cut(s) 738, 770
BpuEI CTTGAG 2 cut(s) 447, 727
Bsa29I ATCGAT 1 cut(s) 719
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 2 cut(s) 622, 908
Bse3DI GCAATG 2 cut(s) 365, 558
BseBI CCWGG 1 cut(s) 597
BseCI ATCGAT 1 cut(s) 719
BseGI GGATG 2 cut(s) 352, 522
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 2 cut(s) 365, 558
BseMII CTCAG 2 cut(s) 468, 939
BseNI ACTGG 2 cut(s) 622, 908
BseRI GAGGAG 1 cut(s) 679
BseXI GCAGC 3 cut(s) 91, 304, 374
BshFI GGCC 1 cut(s) 621
BshVI ATCGAT 1 cut(s) 719
BsiHKAI GWGCWC 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 114
BsmI GAATGC 1 cut(s) 903
BsnI GGCC 1 cut(s) 621
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 3 cut(s) 146, 822, 954
BspANI GGCC 1 cut(s) 621
BspCNI CTCAG 2 cut(s) 469, 940
BspDI ATCGAT 1 cut(s) 719
BspLI GGNNCC 1 cut(s) 882
BspMAI CTGCAG 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 340
BsrDI GCAATG 2 cut(s) 365, 558
BsrI ACTGG 2 cut(s) 622, 908
BssMI GATC 3 cut(s) 146, 822, 954
Bst2UI CCWGG 1 cut(s) 597
Bst4CI ACNGT 3 cut(s) 96, 568, 592
Bst6I CTCTTC 2 cut(s) 373, 945
BstAPI GCANNNNNTGC 1 cut(s) 326
BstC8I GCNNGC 3 cut(s) 327, 789, 901
BstDEI CTNAG 2 cut(s) 477, 948
BstF5I GGATG 2 cut(s) 352, 522
BstKTI GATC 3 cut(s) 149, 825, 957
BstMBI GATC 3 cut(s) 146, 822, 954
BstMWI GCNNNNNNNGC 2 cut(s) 326, 896
BstNI CCWGG 1 cut(s) 597
BstSCI CCNGG 1 cut(s) 595
BstSFI CTRYAG 2 cut(s) 204, 807
BstV1I GCAGC 3 cut(s) 91, 304, 374
BstV2I GAAGAC 1 cut(s) 640
BstXI CCANNNNNNTGG 1 cut(s) 343
Bsu15I ATCGAT 1 cut(s) 719
BsuRI GGCC 1 cut(s) 621
BsuTUI ATCGAT 1 cut(s) 719
BtsCI GGATG 2 cut(s) 352, 522
BtsI GCAGTG 3 cut(s) 201, 213, 525
BtsIMutI CAGTG 5 cut(s) 201, 213, 474, 525, 564
BveI ACCTGC 1 cut(s) 340
Cac8I GCNNGC 3 cut(s) 327, 789, 901
ClaI ATCGAT 1 cut(s) 719
CseI GACGC 1 cut(s) 562
Csp6I GTAC 2 cut(s) 35, 851
CviAII CATG 3 cut(s) 5, 537, 817
CviQI GTAC 2 cut(s) 35, 851
DdeI CTNAG 2 cut(s) 477, 948
DpnI GATC 3 cut(s) 148, 824, 956
DpnII GATC 3 cut(s) 146, 822, 954
Eam1104I CTCTTC 2 cut(s) 373, 945
EarI CTCTTC 2 cut(s) 373, 945
Eco57I CTGAAG 1 cut(s) 762
EcoRII CCWGG 1 cut(s) 595
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 540, 820
FalI AAGNNNNNCTT 4 cut(s) 954, 986, 967, 999
FatI CATG 3 cut(s) 4, 536, 816
FbaI TGATCA 2 cut(s) 822, 954
Fnu4HI GCNGC 3 cut(s) 105, 318, 363
FokI GGATG 2 cut(s) 359, 529
Fsp4HI GCNGC 3 cut(s) 105, 318, 363
FspBI CTAG 1 cut(s) 842
GluI GCNGC 3 cut(s) 105, 318, 363
HaeIII GGCC 1 cut(s) 621
HgaI GACGC 1 cut(s) 562
Hin1II CATG 3 cut(s) 8, 540, 820
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 1 cut(s) 53
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 3 cut(s) 132, 448, 670
Hpy188III TCNNGA 3 cut(s) 706, 732, 975
Hpy8I GTNNAC 1 cut(s) 214
Hpy99I CGWCG 2 cut(s) 556, 993
HpyAV CCTTC 4 cut(s) 497, 632, 737, 1010
HpyCH4III ACNGT 3 cut(s) 96, 568, 592
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 896
HpyF3I CTNAG 2 cut(s) 477, 948
Hsp92II CATG 3 cut(s) 8, 540, 820
Ksp22I TGATCA 2 cut(s) 822, 954
Kzo9I GATC 3 cut(s) 146, 822, 954
LmnI GCTCC 1 cut(s) 359
LpnPI CCDG 8 cut(s) 202, 206, 345, 582, 603, 609, 885, 921
Lsp1109I GCAGC 3 cut(s) 91, 304, 374
LweI GCATC 4 cut(s) 284, 337, 539, 661
MaeI CTAG 1 cut(s) 842
MaeIII GTNAC 2 cut(s) 857, 995
MalI GATC 3 cut(s) 148, 824, 956
MboI GATC 3 cut(s) 146, 822, 954
MboII GAAGA 4 cut(s) 390, 421, 640, 932
MfeI CAATTG 2 cut(s) 371, 773
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 7 cut(s) 48, 110, 248, 371, 491, 773, 932
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 3 cut(s) 396, 497, 636
MslI CAYNNNNRTG 3 cut(s) 206, 535, 569
MspA1I CMGCKG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 597
MunI CAATTG 2 cut(s) 371, 773
Mva1269I GAATGC 1 cut(s) 903
MvaI CCWGG 1 cut(s) 597
MwoI GCNNNNNNNGC 2 cut(s) 326, 896
NdeII GATC 3 cut(s) 146, 822, 954
NlaIII CATG 3 cut(s) 8, 540, 820
NlaIV GGNNCC 1 cut(s) 882
NmuCI GTSAC 1 cut(s) 857
NsiI ATGCAT 1 cut(s) 6
OliI CACNNNNGTG 1 cut(s) 206
PaqCI CACCTGC 1 cut(s) 340
PctI GAATGC 1 cut(s) 903
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 53
PkrI GCNGC 3 cut(s) 106, 319, 364
PsiI TTATAA 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 595
PspGI CCWGG 1 cut(s) 595
PspN4I GGNNCC 1 cut(s) 882
PstI CTGCAG 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 22
RsaI GTAC 2 cut(s) 36, 852
RsaNI GTAC 2 cut(s) 35, 851
RseI CAYNNNNRTG 3 cut(s) 206, 535, 569
SaqAI TTAA 3 cut(s) 396, 497, 636
SatI GCNGC 3 cut(s) 105, 318, 363
Sau3AI GATC 3 cut(s) 146, 822, 954
ScaI AGTACT 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 597
SduI GDGCHC 1 cut(s) 82
SfaNI GCATC 4 cut(s) 284, 337, 539, 661
SfcI CTRYAG 2 cut(s) 204, 807
SmiMI CAYNNNNRTG 3 cut(s) 206, 535, 569
SmlI CTYRAG 2 cut(s) 462, 706
SmoI CTYRAG 2 cut(s) 462, 706
Sse9I AATT 7 cut(s) 48, 110, 248, 371, 491, 773, 932
SspI AATATT 1 cut(s) 630
SspMI CTAG 1 cut(s) 842
StyD4I CCNGG 1 cut(s) 595
TaaI ACNGT 3 cut(s) 96, 568, 592
TaqI TCGA 3 cut(s) 76, 187, 719
TasI AATT 7 cut(s) 48, 110, 248, 371, 491, 773, 932
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 3 cut(s) 396, 497, 636
Tru9I TTAA 3 cut(s) 396, 497, 636
TscAI CASTG 5 cut(s) 208, 213, 481, 532, 571
TseFI GTSAC 1 cut(s) 857
TseI GCWGC 3 cut(s) 104, 317, 362
Tsp45I GTSAC 1 cut(s) 857
TspDTI ATGAA 6 cut(s) 21, 261, 299, 533, 640, 790
TspRI CASTG 5 cut(s) 208, 213, 481, 532, 571
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 1 cut(s) 842
ZrmI AGTACT 1 cut(s) 36
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.