Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000718.1

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Forward (+)

140691 .. 141832

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgcactattactggtacctcaccaatgatggcattgagttcttgaggaactacctcaacctgccctcggagattgtgcccaacactctcaagaagcaggctaagcccgccggccgtcctttcggcggcccaccaggcgaccgccctcggtttagtttctggtgcatttgttcaacactgatcaactggaatttgatttggtttttgttgatgtgcattaatggcccacctcgctttggtgatggagagcgcagatttggaggtgaccgtgatggttaccgtggaggtcctcgtggtggaccaggaggtgactttggcggggacaagggaggagcccctgctgactacagaccttctttcggggttcctgtagactcttgctataggctctcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

131

Amino Acids

14.61

Weight (kDa)

9.0

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	2 - 33	1.9e-12	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	69
Acc65I	GGTACC	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	4 cut(s)	108, 126, 142, 318
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	190
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	5 cut(s)	67, 125, 236, 296, 359
AgsI	TTSAA	1 cut(s)	174
AjnI	CCWGG	2 cut(s)	133, 301
AoxI	GGCC	3 cut(s)	112, 127, 223
ApoI	RAATTY	1 cut(s)	190
AseI	ATTAAT	1 cut(s)	219
Asp718I	GGTACC	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	4 cut(s)	128, 224, 287, 299
AsuHPI	GGTGA	4 cut(s)	13, 251, 275, 320
AvaII	GGWCC	2 cut(s)	287, 299
BaeGI	GKGCMC	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	337
BauI	CACGAG	1 cut(s)	291
BccI	CCATC	3 cut(s)	23, 236, 266
BceAI	ACGGC	1 cut(s)	99
BciT130I	CCWGG	2 cut(s)	135, 303
BclI	TGATCA	1 cut(s)	180
BfmI	CTRYAG	3 cut(s)	346, 369, 382
BfuAI	ACCTGC	1 cut(s)	69
BglI	GCCNNNNNGGC	1 cut(s)	135
BisI	GCNGC	1 cut(s)	127
BlpI	GCTNAGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	2 cut(s)	135, 303
Bme18I	GGWCC	2 cut(s)	287, 299
BmgT120I	GGNCC	4 cut(s)	128, 224, 287, 299
BmiI	GGNNCC	3 cut(s)	17, 334, 366
BmrFI	CCNGG	2 cut(s)	135, 303
Bpu1102I	GCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	2 cut(s)	64, 74
BsaJI	CCNNGG	3 cut(s)	66, 146, 280
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 125, 236, 296, 359
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	17, 191
BseBI	CCWGG	2 cut(s)	135, 303
BseDI	CCNNGG	3 cut(s)	66, 146, 280
BseLI	CCNNNNNNNGG	5 cut(s)	67, 125, 236, 296, 359
BseNI	ACTGG	2 cut(s)	17, 191
BseRI	GAGGAG	1 cut(s)	345
BseSI	GKGCMC	1 cut(s)	81
BseX3I	CGGCCG	1 cut(s)	112
Bsh1285I	CGRYCG	2 cut(s)	115, 142
BshFI	GGCC	3 cut(s)	114, 129, 225
BshNI	GGYRCC	1 cut(s)	15
BsiEI	CGRYCG	2 cut(s)	115, 142
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	5 cut(s)	67, 125, 236, 296, 359
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	3 cut(s)	114, 129, 225
Bsp1286I	GDGCHC	2 cut(s)	81, 337
Bsp143I	GATC	1 cut(s)	180
Bsp1720I	GCTNAGC	1 cut(s)	102
BspACI	CCGC	4 cut(s)	108, 126, 142, 318
BspANI	GGCC	3 cut(s)	114, 129, 225
BspLI	GGNNCC	3 cut(s)	17, 334, 366
BspMI	ACCTGC	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	17, 191
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	66, 146, 280
BssMI	GATC	1 cut(s)	180
BssSI	CACGAG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	135, 303
Bst4CI	ACNGT	2 cut(s)	269, 281
BstC8I	GCNNGC	3 cut(s)	99, 108, 112
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	280
BstEII	GGTNACC	2 cut(s)	263, 275
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMCI	CGRYCG	2 cut(s)	115, 142
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 107, 135, 222, 231
BstNI	CCWGG	2 cut(s)	135, 303
BstPI	GGTNACC	2 cut(s)	263, 275
BstSCI	CCNGG	2 cut(s)	133, 301
BstSFI	CTRYAG	3 cut(s)	346, 369, 382
BstSLI	GKGCMC	1 cut(s)	81
BstZI	CGGCCG	1 cut(s)	112
BsuRI	GGCC	3 cut(s)	114, 129, 225
BtgI	CCRYGG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	176
BveI	ACCTGC	1 cut(s)	69
Cac8I	GCNNGC	3 cut(s)	99, 108, 112
CfoI	GCGC	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	4 cut(s)	128, 224, 287, 299
Csp6I	GTAC	1 cut(s)	16
CviJI	RGCY	7 cut(s)	101, 106, 114, 129, 225, 335, 388
CviKI_1	RGCY	7 cut(s)	101, 106, 114, 129, 225, 335, 388
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	112
EagI	CGGCCG	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	287, 299
Eco52I	CGGCCG	1 cut(s)	112
Eco91I	GGTNACC	2 cut(s)	263, 275
EcoO109I	RGGNCCY	1 cut(s)	287
EcoO65I	GGTNACC	2 cut(s)	263, 275
EcoRII	CCWGG	2 cut(s)	133, 301
EcoT38I	GRGCYC	1 cut(s)	337
FaiI	YATR	2 cut(s)	384, 394
FaqI	GGGAC	1 cut(s)	335
FauI	CCCGC	2 cut(s)	115, 311
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	127
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	1 cut(s)	127
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	1 cut(s)	127
HaeIII	GGCC	3 cut(s)	114, 129, 225
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	1 cut(s)	252
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HinfI	GANTC	1 cut(s)	374
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	4 cut(s)	13, 251, 275, 320
Hpy166II	GTNNAC	2 cut(s)	299, 373
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	2 cut(s)	43, 91
Hpy8I	GTNNAC	2 cut(s)	299, 373
HpyAV	CCTTC	1 cut(s)	363
HpyCH4III	ACNGT	2 cut(s)	269, 281
HpyCH4V	TGCA	3 cut(s)	4, 165, 216
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 107, 135, 222, 231
HpyF3I	CTNAG	1 cut(s)	102
HspAI	GCGC	1 cut(s)	250
KpnI	GGTACC	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	332
MaeIII	GTNAC	3 cut(s)	263, 275, 308
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MhlI	GDGCHC	2 cut(s)	81, 337
MluCI	AATT	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	368
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	1 cut(s)	219
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	135, 303
MvaI	CCWGG	2 cut(s)	135, 303
MwoI	GCNNNNNNNGC	5 cut(s)	103, 107, 135, 222, 231
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	1 cut(s)	180
NgoMIV	GCCGGC	1 cut(s)	110
NlaIV	GGNNCC	3 cut(s)	17, 334, 366
NmuCI	GTSAC	2 cut(s)	263, 308
PdiI	GCCGGC	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	128
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
PpuMI	RGGWCCY	1 cut(s)	287
PshBI	ATTAAT	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	133, 301
PspEI	GGTNACC	2 cut(s)	263, 275
PspGI	CCWGG	2 cut(s)	133, 301
PspN4I	GGNNCC	3 cut(s)	17, 334, 366
PspPI	GGNCC	4 cut(s)	128, 224, 287, 299
PspPPI	RGGWCCY	1 cut(s)	287
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	4 cut(s)	128, 224, 287, 299
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	135, 303
SduI	GDGCHC	2 cut(s)	81, 337
SetI	ASST	8 cut(s)	21, 57, 63, 232, 265, 289, 310, 355
SfcI	CTRYAG	3 cut(s)	346, 369, 382
SinI	GGWCC	2 cut(s)	287, 299
SmlI	CTYRAG	2 cut(s)	43, 89
SmoI	CTYRAG	2 cut(s)	43, 89
Sse9I	AATT	1 cut(s)	190
SsiI	CCGC	4 cut(s)	108, 126, 142, 318
StyD4I	CCNGG	2 cut(s)	133, 301
TaaI	ACNGT	2 cut(s)	269, 281
TasI	AATT	1 cut(s)	190
TauI	GCSGC	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	2 cut(s)	263, 308
Tsp45I	GTSAC	2 cut(s)	263, 308
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	2 cut(s)	287, 299
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.