Rmu_sc0005008.1_g000021

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005008.1
OG0002468
Physical Location & Seq
Reverse (-)
79437 .. 80348
912 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 912 bp
atgcaaaccccaaaagattcgacgcatcaaaacctcaagttgggtctcaaaaccctaattttcaaccctaaatcccataatcaccgccacatcgttcacaagaactacaagctcgcgccaccatcgccatcttcgcagtcttcactcacttattcgtggtcgttattggataactcatcgtcgtggacatcgtctatgttggacgacttgctcggaacagacagtggcgtcgcctacatgacaacctcaaacgacgatatcttaatgtcaatgacgaccagtactgctcgcagttaccccaagaagaaaagtactcgaggaagcggaagggtgaaaagggaatttccaccaccaataccgcttctggcacaaacggggaatttgcaatgtcgcatgccttggaatctgactaagcattattctaatggaaggctagttttgaaaggagagaaagcacagcaccatgagtacttcgaagccgaacgtgacagcggccgccttgtgttgaagcttgtgcctctggacagcaccatactaacgacttatgatgtgcctgaatcgtccggtggacatttggacgtgtgtgaggaaaacgatgaagagcttgaaatggaaaacgtgcagtttacaaaagaagactacgctgaggatgagaatgatgatgctgatgatgacgaagatgatgatgatgatgatgatgaatgtgacaacaatgtggatgagagtaaaactatgttggtttgcaattcggtccctcagtcacactcggagatcagcaggtgtgatgagaaatatggaaatctgccgatgtttttcacgaagtcagctgcaagtgtccatgaacaaccgcaaaactactttgcacaccctgcttcagctcctcttcgtccaatgactgctgtgaagaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

303

Amino Acids

34.09

Weight (kDa)

4.91

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 114 - 171 7.6e-15 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 768
AasI GACNNNNNNGTC 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 768
AccII CGCG 1 cut(s) 116
AciI CCGC 6 cut(s) 85, 324, 359, 492, 496, 848
AcoI YGGCCR 1 cut(s) 493
AcsI RAATTY 2 cut(s) 341, 379
AcuI CTGAAG 1 cut(s) 858
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 3 cut(s) 283, 313, 470
AfiI CCNNNNNNNGG 1 cut(s) 40
AflIII ACRYGT 1 cut(s) 579
AgsI TTSAA 4 cut(s) 64, 442, 508, 608
AjiI CACGTC 1 cut(s) 580
AluBI AGCT 5 cut(s) 112, 511, 604, 827, 878
AluI AGCT 5 cut(s) 112, 511, 604, 827, 878
Alw26I GTCTC 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 315
AoxI GGCC 1 cut(s) 493
ApeKI GCWGC 1 cut(s) 827
ApoI RAATTY 2 cut(s) 341, 379
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 751
AsuHPI GGTGA 2 cut(s) 74, 343
AsuII TTCGAA 1 cut(s) 474
AvaI CYCGRG 1 cut(s) 315
AvaII GGWCC 1 cut(s) 751
BbsI GAAGAC 2 cut(s) 132, 642
BbvCI CCTCAGC 1 cut(s) 645
BbvI GCAGC 1 cut(s) 814
BccI CCATC 2 cut(s) 130, 136
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 768
BisI GCNGC 3 cut(s) 493, 496, 828
BlsI GCNGC 3 cut(s) 494, 497, 829
BmcAI AGTACT 3 cut(s) 283, 313, 470
Bme18I GGWCC 1 cut(s) 751
BmeT110I CYCGRG 1 cut(s) 315
BmgBI CACGTC 1 cut(s) 580
BmgT120I GGNCC 1 cut(s) 751
BmiI GGNNCC 1 cut(s) 753
BmsI GCATC 2 cut(s) 34, 652
BpiI GAAGAC 2 cut(s) 132, 642
Bpu10I CCTNAGC 1 cut(s) 645
Bpu14I TTCGAA 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 398
BsaWI WCCGGW 1 cut(s) 563
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 392
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 2 cut(s) 655, 724
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 392
BseMII CTCAG 2 cut(s) 636, 770
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 870
BseX3I CGGCCG 1 cut(s) 493
BseXI GCAGC 1 cut(s) 814
BsgI GTGCAG 1 cut(s) 641
Bsh1236I CGCG 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 496
BshFI GGCC 1 cut(s) 495
BsiEI CGRYCG 1 cut(s) 496
BsiHKCI CYCGRG 1 cut(s) 315
BsiSI CCGG 1 cut(s) 564
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 737
BsnI GGCC 1 cut(s) 495
Bso31I GGTCTC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 315
Bsp119I TTCGAA 1 cut(s) 474
Bsp143I GATC 1 cut(s) 771
BspACI CCGC 6 cut(s) 85, 324, 359, 492, 496, 848
BspANI GGCC 1 cut(s) 495
BspCNI CTCAG 2 cut(s) 637, 769
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 753
BspMI ACCTGC 1 cut(s) 768
BspQI GCTCTTC 1 cut(s) 594
BspT104I TTCGAA 1 cut(s) 474
BspTNI GGTCTC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 392
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 1 cut(s) 771
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 398
Bst4CI ACNGT 1 cut(s) 224
Bst6I CTCTTC 2 cut(s) 594, 888
BstACI GRCGYC 1 cut(s) 228
BstAPI GCANNNNNTGC 1 cut(s) 869
BstBI TTCGAA 1 cut(s) 474
BstC8I GCNNGC 3 cut(s) 114, 289, 395
BstDEI CTNAG 3 cut(s) 411, 645, 756
BstF5I GGATG 2 cut(s) 655, 724
BstFNI CGCG 1 cut(s) 116
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 1 cut(s) 774
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 771
BstMCI CGRYCG 1 cut(s) 496
BstMWI GCNNNNNNNGC 3 cut(s) 124, 133, 869
BstNSI RCATGY 1 cut(s) 397
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 814
BstV2I GAAGAC 2 cut(s) 132, 642
BstZI CGGCCG 1 cut(s) 493
BsuRI GGCC 1 cut(s) 495
BtgZI GCGATG 1 cut(s) 108
BtrI CACGTC 1 cut(s) 580
BtsCI GGATG 2 cut(s) 655, 724
BtsIMutI CAGTG 1 cut(s) 229
BveI ACCTGC 1 cut(s) 768
Cac8I GCNNGC 3 cut(s) 114, 289, 395
CciNI GCGGCCGC 1 cut(s) 493
CfoI GCGC 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 751
CseI GACGC 2 cut(s) 31, 217
Csp6I GTAC 3 cut(s) 282, 312, 469
CviAII CATG 4 cut(s) 238, 394, 464, 839
CviJI RGCY 8 cut(s) 112, 433, 479, 495, 511, 604, 827, 878
CviKI_1 RGCY 8 cut(s) 112, 433, 479, 495, 511, 604, 827, 878
CviQI GTAC 3 cut(s) 282, 312, 469
DdeI CTNAG 3 cut(s) 411, 645, 756
DpnI GATC 1 cut(s) 773
DpnII GATC 1 cut(s) 771
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 493
EagI CGGCCG 1 cut(s) 493
Eam1104I CTCTTC 2 cut(s) 594, 888
EarI CTCTTC 2 cut(s) 594, 888
EclXI CGGCCG 1 cut(s) 493
Eco130I CCWWGG 1 cut(s) 398
Eco31I GGTCTC 1 cut(s) 50
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 751
Eco52I CGGCCG 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 858
Eco88I CYCGRG 1 cut(s) 315
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 398
FaeI CATG 4 cut(s) 241, 397, 467, 842
FaqI GGGAC 1 cut(s) 737
FatI CATG 4 cut(s) 237, 393, 463, 838
Fnu4HI GCNGC 3 cut(s) 493, 496, 828
FokI GGATG 2 cut(s) 662, 731
Fsp4HI GCNGC 3 cut(s) 493, 496, 828
FspBI CTAG 1 cut(s) 434
GlaI GCGC 1 cut(s) 117
GluI GCNGC 3 cut(s) 493, 496, 828
HaeIII GGCC 1 cut(s) 495
HapII CCGG 1 cut(s) 564
HgaI GACGC 2 cut(s) 31, 217
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 4 cut(s) 241, 397, 467, 842
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 3 cut(s) 17, 403, 557
HpaII CCGG 1 cut(s) 564
HphI GGTGA 2 cut(s) 74, 343
Hpy166II GTNNAC 4 cut(s) 97, 186, 569, 627
Hpy188I TCNGA 3 cut(s) 215, 408, 769
Hpy188III TCNNGA 2 cut(s) 521, 817
Hpy8I GTNNAC 4 cut(s) 97, 186, 569, 627
Hpy99I CGWCG 4 cut(s) 25, 184, 233, 257
HpyAV CCTTC 2 cut(s) 321, 423
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 3 cut(s) 484, 579, 618
HpyCH4V TGCA 6 cut(s) 4, 385, 622, 744, 830, 863
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 133, 869
HpyF3I CTNAG 3 cut(s) 411, 645, 756
HpySE526I ACGT 3 cut(s) 484, 579, 618
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 4 cut(s) 241, 397, 467, 842
HspAI GCGC 1 cut(s) 116
Kzo9I GATC 1 cut(s) 771
LguI GCTCTTC 1 cut(s) 594
LmnI GCTCC 1 cut(s) 883
LpnPI CCDG 7 cut(s) 292, 350, 506, 567, 577, 763, 882
Lsp1109I GCAGC 1 cut(s) 814
LweI GCATC 2 cut(s) 34, 652
MaeI CTAG 1 cut(s) 434
MaeII ACGT 3 cut(s) 484, 579, 618
MaeIII GTNAC 4 cut(s) 293, 485, 704, 759
MalI GATC 1 cut(s) 773
MboI GATC 1 cut(s) 771
MboII GAAGA 7 cut(s) 123, 132, 316, 611, 647, 689, 875
MluCI AATT 5 cut(s) 57, 341, 379, 745, 907
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 8 cut(s) 44, 256, 311, 528, 580, 640, 765, 891
MseI TTAA 1 cut(s) 263
MslI CAYNNNNRTG 1 cut(s) 181
MspA1I CMGCKG 2 cut(s) 492, 827
MspI CCGG 1 cut(s) 564
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 3 cut(s) 124, 133, 869
NdeII GATC 1 cut(s) 771
NlaIII CATG 4 cut(s) 241, 397, 467, 842
NlaIV GGNNCC 1 cut(s) 753
NmuCI GTSAC 3 cut(s) 485, 704, 759
NotI GCGGCCGC 1 cut(s) 493
NspI RCATGY 1 cut(s) 397
NspV TTCGAA 1 cut(s) 474
PaeI GCATGC 1 cut(s) 397
PaeR7I CTCGAG 1 cut(s) 315
PaqCI CACCTGC 1 cut(s) 768
PciSI GCTCTTC 1 cut(s) 594
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PfeI GAWTC 3 cut(s) 17, 403, 557
PflFI GACNNNGTC 1 cut(s) 190
PkrI GCNGC 3 cut(s) 494, 497, 829
PspN4I GGNNCC 1 cut(s) 753
PspPI GGNCC 1 cut(s) 751
PspXI VCTCGAGB 1 cut(s) 315
PsyI GACNNNGTC 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 827
RsaI GTAC 3 cut(s) 283, 313, 470
RsaNI GTAC 3 cut(s) 282, 312, 469
RseI CAYNNNNRTG 1 cut(s) 181
SapI GCTCTTC 1 cut(s) 594
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 3 cut(s) 493, 496, 828
Sau3AI GATC 1 cut(s) 771
Sau96I GGNCC 1 cut(s) 751
ScaI AGTACT 3 cut(s) 283, 313, 470
SfaNI GCATC 2 cut(s) 34, 652
Sfr274I CTCGAG 1 cut(s) 315
SfuI TTCGAA 1 cut(s) 474
SinI GGWCC 1 cut(s) 751
SlaI CTCGAG 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 181
SmlI CTYRAG 2 cut(s) 35, 315
SmoI CTYRAG 2 cut(s) 35, 315
SphI GCATGC 1 cut(s) 397
Sse9I AATT 5 cut(s) 57, 341, 379, 745, 907
SsiI CCGC 6 cut(s) 85, 324, 359, 492, 496, 848
SspMI CTAG 1 cut(s) 434
StyI CCWWGG 1 cut(s) 398
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 3 cut(s) 487, 582, 621
TaqI TCGA 3 cut(s) 20, 316, 474
TaqII GACCGA 1 cut(s) 739
TasI AATT 5 cut(s) 57, 341, 379, 745, 907
TatI WGTACW 3 cut(s) 281, 311, 468
TauI GCSGC 2 cut(s) 495, 498
TfiI GAWTC 3 cut(s) 17, 403, 557
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 3 cut(s) 485, 704, 759
TseI GCWGC 1 cut(s) 827
Tsp45I GTSAC 3 cut(s) 485, 704, 759
TspDTI ATGAA 3 cut(s) 612, 714, 855
TspRI CASTG 1 cut(s) 229
Tth111I GACNNNGTC 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 751
XapI RAATTY 2 cut(s) 341, 379
XceI RCATGY 1 cut(s) 397
XhoI CTCGAG 1 cut(s) 315
XspI CTAG 1 cut(s) 434
ZrmI AGTACT 3 cut(s) 283, 313, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.