Rmu_sc0006269.1_g000021

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006269.1
OG0001867
Physical Location & Seq
Reverse (-)
89115 .. 90374
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
atgagtactaattctaatgcctttgtttttcctcttgctttctgtttagttgggatatctcagctgctgctttgctcaggtgatgctcccaactgtgatcccaatttgattgaagccagtgatagggacaggctccaatttgctttgaacttggaattcttggagaccgagtttttcttgtatgctgctcttggaaaaggtctagatgctatcagtccaaatttaaccctaggcggcccccctccgattggtgctcagaaggcgaatctcgaacctcttgttcgtcgtatcatcgaggaattcggttatcaagaagttggtcatatcaggaacgatcttgcaatgtgtggaatcaaagatgaaggcatcatagtgccggagaagcttggggcggagaatcggacgtccagtaacatcatatcagccgatcctaactcgctttcgtatgcaaggacaccgccgcagatattgaggattgtatatgcaagtggcaatgaatcactgccgggcggattttaccctaaaggtgcaaatgggaatattgcaaggcgcttcttgaagattaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

189

Amino Acids

20.45

Weight (kDa)

5.06

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 40 - 110 4.3e-12 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 407
AciI CCGC 5 cut(s) 234, 392, 458, 461, 510
AclWI GGATC 2 cut(s) 92, 422
AcsI RAATTY 3 cut(s) 155, 220, 299
AcyI GRCGYC 1 cut(s) 404
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 2 cut(s) 123, 248
AgsI TTSAA 3 cut(s) 113, 148, 559
AluBI AGCT 2 cut(s) 64, 385
AluI AGCT 2 cut(s) 64, 385
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 2 cut(s) 92, 422
AlwNI CAGNNNCTG 1 cut(s) 67
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 3 cut(s) 64, 67, 185
ApoI RAATTY 3 cut(s) 155, 220, 299
AseI ATTAAT 1 cut(s) 564
AspA2I CCTAGG 1 cut(s) 229
AspLEI GCGC 1 cut(s) 552
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 507
AsuHPI GGTGA 1 cut(s) 92
AvrII CCTAGG 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 3 cut(s) 51, 54, 172
BcnI CCSGG 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 2 cut(s) 203, 230
BfoI RGCGCY 1 cut(s) 553
BisI GCNGC 5 cut(s) 65, 68, 186, 235, 461
BlnI CCTAGG 1 cut(s) 229
BlsI GCNGC 5 cut(s) 66, 69, 187, 236, 462
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 507
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 134, 238
BmrFI CCNGG 1 cut(s) 507
BmsI GCATC 3 cut(s) 73, 196, 375
Bpu10I CCTNAGC 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 507
BsaHI GRCGYC 1 cut(s) 404
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 248
Bse1I ACTGG 2 cut(s) 117, 408
Bse3DI GCAATG 2 cut(s) 348, 499
BseDI CCNNGG 1 cut(s) 229
BseLI CCNNNNNNNGG 2 cut(s) 123, 248
BseMI GCAATG 2 cut(s) 348, 499
BseMII CTCAG 3 cut(s) 74, 90, 269
BseNI ACTGG 2 cut(s) 117, 408
BseXI GCAGC 3 cut(s) 51, 54, 172
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 2 cut(s) 377, 506
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 123, 248
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 3 cut(s) 97, 334, 427
BspACI CCGC 5 cut(s) 234, 392, 458, 461, 510
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 3 cut(s) 73, 89, 268
BspLI GGNNCC 2 cut(s) 134, 238
BspPI GGATC 2 cut(s) 92, 422
BspTNI GGTCTC 1 cut(s) 158
BsrDI GCAATG 2 cut(s) 348, 499
BsrI ACTGG 2 cut(s) 117, 408
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 3 cut(s) 97, 334, 427
BssNI GRCGYC 1 cut(s) 404
BssT1I CCWWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 404
BstDEI CTNAG 3 cut(s) 60, 76, 255
BstH2I RGCGCY 1 cut(s) 553
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 3 cut(s) 100, 337, 430
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 3 cut(s) 97, 334, 427
BstMWI GCNNNNNNNGC 2 cut(s) 260, 382
BstSCI CCNGG 1 cut(s) 505
BstV1I GCAGC 3 cut(s) 51, 54, 172
BsuRI GGCC 1 cut(s) 237
BtsI GCAGTG 1 cut(s) 500
BtsIMutI CAGTG 2 cut(s) 124, 500
CaiI CAGNNNCTG 1 cut(s) 67
CfoI GCGC 1 cut(s) 552
Cfr13I GGNCC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 6
CviJI RGCY 6 cut(s) 64, 116, 133, 237, 385, 425
CviKI_1 RGCY 6 cut(s) 64, 116, 133, 237, 385, 425
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 3 cut(s) 60, 76, 255
DpnI GATC 3 cut(s) 99, 336, 429
DpnII GATC 3 cut(s) 97, 334, 427
EciI GGCGGA 2 cut(s) 407, 525
Eco130I CCWWGG 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 158
Eco32I GATATC 1 cut(s) 57
EcoRI GAATTC 2 cut(s) 155, 299
EcoRV GATATC 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 229
FaiI YATR 7 cut(s) 183, 324, 371, 419, 447, 481, 483
FaqI GGGAC 1 cut(s) 140
Fnu4HI GCNGC 5 cut(s) 65, 68, 186, 235, 461
Fsp4HI GCNGC 5 cut(s) 65, 68, 186, 235, 461
FspBI CTAG 2 cut(s) 203, 230
GlaI GCGC 1 cut(s) 551
GluI GCNGC 5 cut(s) 65, 68, 186, 235, 461
HaeII RGCGCY 1 cut(s) 553
HaeIII GGCC 1 cut(s) 237
HapII CCGG 2 cut(s) 377, 506
HhaI GCGC 1 cut(s) 552
Hin1I GRCGYC 1 cut(s) 404
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 4 cut(s) 265, 351, 397, 497
HpaII CCGG 2 cut(s) 377, 506
HphI GGTGA 1 cut(s) 92
Hpy188I TCNGA 3 cut(s) 246, 258, 402
Hpy188III TCNNGA 5 cut(s) 203, 269, 311, 328, 556
Hpy99I CGWCG 1 cut(s) 288
HpyAV CCTTC 2 cut(s) 253, 356
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 404
HpyCH4V TGCA 5 cut(s) 341, 449, 485, 530, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 382
HpyF3I CTNAG 3 cut(s) 60, 76, 255
HpySE526I ACGT 1 cut(s) 404
Hsp92I GRCGYC 1 cut(s) 404
HspAI GCGC 1 cut(s) 550
Kzo9I GATC 3 cut(s) 97, 334, 427
LmnI GCTCC 2 cut(s) 91, 138
LpnPI CCDG 7 cut(s) 63, 115, 130, 313, 390, 421, 519
Lsp1109I GCAGC 3 cut(s) 51, 54, 172
LweI GCATC 3 cut(s) 73, 196, 375
MaeI CTAG 2 cut(s) 203, 230
MaeII ACGT 1 cut(s) 404
MaeIII GTNAC 1 cut(s) 410
MalI GATC 3 cut(s) 99, 336, 429
MboI GATC 3 cut(s) 97, 334, 427
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 7 cut(s) 10, 103, 137, 155, 220, 299, 565
MnlI CCTC 5 cut(s) 42, 252, 285, 289, 465
MseI TTAA 3 cut(s) 224, 564, 568
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 64
MspI CCGG 2 cut(s) 377, 506
MspR9I CCNGG 1 cut(s) 507
MwoI GCNNNNNNNGC 2 cut(s) 260, 382
NciI CCSGG 1 cut(s) 507
NdeII GATC 3 cut(s) 97, 334, 427
NlaIV GGNNCC 2 cut(s) 134, 238
PacI TTAATTAA 1 cut(s) 568
PfeI GAWTC 4 cut(s) 265, 351, 397, 497
PkrI GCNGC 5 cut(s) 66, 69, 187, 236, 462
PshBI ATTAAT 1 cut(s) 564
PspN4I GGNNCC 2 cut(s) 134, 238
PspPI GGNCC 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 64
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 371
SaqAI TTAA 3 cut(s) 224, 564, 568
SatI GCNGC 5 cut(s) 65, 68, 186, 235, 461
Sau3AI GATC 3 cut(s) 97, 334, 427
Sau96I GGNCC 1 cut(s) 236
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 507
SduI GDGCHC 1 cut(s) 256
SetI ASST 7 cut(s) 66, 82, 202, 277, 387, 407, 529
SfaNI GCATC 3 cut(s) 73, 196, 375
SmiMI CAYNNNNRTG 1 cut(s) 371
Sse9I AATT 7 cut(s) 10, 103, 137, 155, 220, 299, 565
SsiI CCGC 5 cut(s) 234, 392, 458, 461, 510
SspI AATATT 1 cut(s) 541
SspMI CTAG 2 cut(s) 203, 230
StyD4I CCNGG 1 cut(s) 505
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 1 cut(s) 407
TaqI TCGA 2 cut(s) 270, 294
TaqII GACCGA 1 cut(s) 182
TasI AATT 7 cut(s) 10, 103, 137, 155, 220, 299, 565
TatI WGTACW 1 cut(s) 5
TauI GCSGC 2 cut(s) 237, 463
TfiI GAWTC 4 cut(s) 265, 351, 397, 497
Tru1I TTAA 3 cut(s) 224, 564, 568
Tru9I TTAA 3 cut(s) 224, 564, 568
TscAI CASTG 2 cut(s) 124, 507
TseI GCWGC 3 cut(s) 64, 67, 185
TspDTI ATGAA 2 cut(s) 375, 510
TspRI CASTG 2 cut(s) 124, 507
VspI ATTAAT 1 cut(s) 564
XapI RAATTY 3 cut(s) 155, 220, 299
XbaI TCTAGA 1 cut(s) 202
XmaJI CCTAGG 1 cut(s) 229
XspI CTAG 2 cut(s) 203, 230
ZraI GACGTC 1 cut(s) 405
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.