AT1G01715

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001886
Physical Location & Seq
Forward (+)
266333 .. 267883
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01715.2

Sequence Viewer

Length: 420 bp
ATGGCTTTCGAACACAGAAATGAAGACCTAAATTCCTTGGATTCGGAAGAAGATCTGGAGAAAATGGAGTCAGAGGTGGAGCAAATGTCGCGCAAGGTTTCCGAGTACAGGAAAAGCCTACCGAGTAATCTGAGCAATTCTGTGATTTCTTCTCGTAGATCCAATTTTCCCAACATCGATTCTTTGGGCTTTCGCACAACTAGCACAGCTCTAGTGTCAAGAGATGGAGCACATATAGGTGGAATCGAACAAGAATCTCGAGATAGCCTGATTCAGCTCAAAGAAAGAGTGTACGAGAACATTGCCACAGTGCCTCTAGTTGTAGAGAGAATGCGAGAGAGTAAAGAGAGAATCGACAAGTCCATTTCTTTCAATGGAACTACTATGCACCCGGCTTTCACAAGGCGGAAAGCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.87

Weight (kDa)

5.97

Isoelectric Point (pI)

71.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 91
AciI CCGC 1 cut(s) 406
AclWI GGATC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 31
AfaI GTAC 2 cut(s) 107, 293
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 1 cut(s) 373
AluBI AGCT 4 cut(s) 209, 277, 413, 417
AluI AGCT 4 cut(s) 209, 277, 413, 417
Alw21I GWGCWC 1 cut(s) 232
AlwI GGATC 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 258
ApoI RAATTY 1 cut(s) 31
AspLEI GCGC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 392
AsuII TTCGAA 1 cut(s) 9
AsuNHI GCTAGC 1 cut(s) 413
AvaI CYCGRG 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 232
BccI CCATC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BcnI CCSGG 1 cut(s) 392
BfaI CTAG 4 cut(s) 201, 212, 317, 414
BglII AGATCT 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 392
BmeT110I CYCGRG 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 392
BmtI GCTAGC 1 cut(s) 417
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 77
Bpu14I TTCGAA 1 cut(s) 9
BpuMI CCSGG 1 cut(s) 392
Bsa29I ATCGAT 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 300
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 1 cut(s) 122
Bsh1236I CGCG 1 cut(s) 91
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 1 cut(s) 392
BslI CCNNNNNNNGG 1 cut(s) 108
BsmI GAATGC 1 cut(s) 336
BsoBI CYCGRG 1 cut(s) 258
Bsp119I TTCGAA 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 2 cut(s) 52, 158
BspACI CCGC 1 cut(s) 406
BspCNI CTCAG 1 cut(s) 123
BspDI ATCGAT 1 cut(s) 177
BspFNI CGCG 1 cut(s) 91
BspOI GCTAGC 1 cut(s) 417
BspPI GGATC 1 cut(s) 153
BspT104I TTCGAA 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 2 cut(s) 52, 158
BssT1I CCWWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 310
BstBI TTCGAA 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 415
BstDEI CTNAG 1 cut(s) 131
BstFNI CGCG 1 cut(s) 91
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 2 cut(s) 55, 161
BstMBI GATC 2 cut(s) 52, 158
BstMWI GCNNNNNNNGC 2 cut(s) 88, 201
BstSCI CCNGG 1 cut(s) 390
BstUI CGCG 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 2 cut(s) 52, 158
BstYI RGATCY 2 cut(s) 52, 158
Bsu15I ATCGAT 1 cut(s) 177
BsuTUI ATCGAT 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 415
CfoI GCGC 1 cut(s) 93
ClaI ATCGAT 1 cut(s) 177
Csp6I GTAC 2 cut(s) 106, 292
CviJI RGCY 9 cut(s) 5, 117, 189, 209, 267, 277, 395, 413, 417
CviKI_1 RGCY 9 cut(s) 5, 117, 189, 209, 267, 277, 395, 413, 417
CviQI GTAC 2 cut(s) 106, 292
DdeI CTNAG 1 cut(s) 131
DpnI GATC 2 cut(s) 54, 160
DpnII GATC 2 cut(s) 52, 158
Eco130I CCWWGG 1 cut(s) 36
Eco88I CYCGRG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaiI YATR 3 cut(s) 234, 236, 386
FspBI CTAG 4 cut(s) 201, 212, 317, 414
GlaI GCGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 77
HapII CCGG 1 cut(s) 392
HhaI GCGC 1 cut(s) 93
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 7 cut(s) 41, 68, 179, 243, 254, 271, 351
HpaII CCGG 1 cut(s) 392
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 4 cut(s) 46, 73, 103, 132
Hpy188III TCNNGA 4 cut(s) 56, 219, 258, 260
Hpy8I GTNNAC 1 cut(s) 292
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 1 cut(s) 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 201
HpyF3I CTNAG 1 cut(s) 131
HspAI GCGC 1 cut(s) 91
Kzo9I GATC 2 cut(s) 52, 158
LmnI GCTCC 2 cut(s) 79, 227
LpnPI CCDG 4 cut(s) 41, 94, 281, 405
MaeI CTAG 4 cut(s) 201, 212, 317, 414
MalI GATC 2 cut(s) 54, 160
MboI GATC 2 cut(s) 52, 158
MboII GAAGA 4 cut(s) 35, 59, 62, 141
MflI RGATCY 2 cut(s) 52, 158
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 3 cut(s) 31, 136, 163
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 2 cut(s) 67, 324
MslI CAYNNNNRTG 2 cut(s) 18, 237
MspI CCGG 1 cut(s) 392
MspR9I CCNGG 1 cut(s) 392
Mva1269I GAATGC 1 cut(s) 336
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 88, 201
NciI CCSGG 1 cut(s) 392
NdeII GATC 2 cut(s) 52, 158
NheI GCTAGC 1 cut(s) 413
NspV TTCGAA 1 cut(s) 9
PaeR7I CTCGAG 1 cut(s) 258
PctI GAATGC 1 cut(s) 336
PfeI GAWTC 6 cut(s) 41, 179, 243, 254, 271, 351
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PsuI RGATCY 2 cut(s) 52, 158
RsaI GTAC 2 cut(s) 107, 293
RsaNI GTAC 2 cut(s) 106, 292
RseI CAYNNNNRTG 2 cut(s) 18, 237
Sau3AI GATC 2 cut(s) 52, 158
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 392
SduI GDGCHC 1 cut(s) 232
SetI ASST 8 cut(s) 30, 78, 99, 211, 241, 279, 415, 419
Sfr274I CTCGAG 1 cut(s) 258
SfuI TTCGAA 1 cut(s) 9
SlaI CTCGAG 1 cut(s) 258
SmiMI CAYNNNNRTG 2 cut(s) 18, 237
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
Sse9I AATT 3 cut(s) 31, 136, 163
SsiI CCGC 1 cut(s) 406
SspMI CTAG 4 cut(s) 201, 212, 317, 414
StyD4I CCNGG 1 cut(s) 390
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 310
TaqI TCGA 5 cut(s) 9, 177, 246, 259, 354
TasI AATT 3 cut(s) 31, 136, 163
TatI WGTACW 1 cut(s) 105
TfiI GAWTC 6 cut(s) 41, 179, 243, 254, 271, 351
TscAI CASTG 1 cut(s) 315
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 1 cut(s) 315
XapI RAATTY 1 cut(s) 31
XhoI CTCGAG 1 cut(s) 258
XspI CTAG 4 cut(s) 201, 212, 317, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.