Rmu_sc0000718.1_g000006

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000718.1
OG0001886
Physical Location & Seq
Reverse (-)
23603 .. 26444
2842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000718.1_g000006.1.cds

Sequence Viewer

Length: 843 bp
atgccaattgaggtgaaaccacatccgagaccacccaatatctccggaataattctacgatcgatgtttccaaaccacaagtcgatcggactctcggatcctcacggatcgaataaattcaccgatatgaaacggcccatcgacgtcggagatcggagaaccgatcgggtccataaacactcaactgggccgccttggaggagaatctgccctagaggacaccagagggacgaccagacagaggagacgatcctatctggaaagtttcgtcgccggagaccgccgcagttcgctggaaaagttgggtctggtcggccgggtcctgaccaccgccgtgccgccgctaccttccacctcagcaagtcagatctagaccgggtcgcatccaaatccatctttgctgctaatctctacctcaaaatctcaatctacaccgatctgggcttcaacttgtacctatgcactaaggaagatgaggactgcccaaatgcccggtgtgctcatcaacgatccggcctacgcagtctcttcctccttcgccgctactgcttttctttgcttcatcttctaaatctccgactcctcctcctccaccgccttcacagcccatgccctctgtggataacacctcttcctcatcctctttactatgaccgtctccagatacaggcaacagtggccatagttttgggtctccacttattcaagttgggtctaatcccaggttcccacgaccttctccacacctccgaaatacttcaagtgactggaccatcggactgtagagtcttgctttcgaccctaacagggatggccctgaattcgatgaagccaaacgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

280

Amino Acids

31.74

Weight (kDa)

9.99

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 785
AatII GACGTC 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 44
AciI CCGC 8 cut(s) 191, 281, 284, 331, 339, 342, 541, 595
AclWI GGATC 5 cut(s) 92, 105, 115, 244, 504
AcoI YGGCCR 2 cut(s) 314, 678
AcsI RAATTY 2 cut(s) 116, 820
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 3 cut(s) 241, 667, 807
AgsI TTSAA 3 cut(s) 448, 706, 761
AjnI CCWGG 1 cut(s) 721
AleI CACNNNNGTG 1 cut(s) 333
Alw21I GWGCWC 1 cut(s) 502
Alw26I GTCTC 6 cut(s) 22, 239, 271, 530, 662, 698
AlwI GGATC 5 cut(s) 92, 105, 115, 244, 504
Aor13HI TCCGGA 1 cut(s) 44
AoxI GGCC 6 cut(s) 134, 188, 314, 514, 678, 813
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 2 cut(s) 116, 820
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
Asp700I GAANNNNTTC 2 cut(s) 116, 756
AspS9I GGNCC 6 cut(s) 135, 169, 188, 320, 770, 814
AsuC2I CCSGG 3 cut(s) 318, 377, 493
AsuHPI GGTGA 2 cut(s) 25, 112
AvaII GGWCC 3 cut(s) 169, 320, 770
BalI TGGCCA 1 cut(s) 680
BamHI GGATCC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 502
BbvCI CCTCAGC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 388
BccI CCATC 4 cut(s) 146, 401, 781, 805
BceAI ACGGC 2 cut(s) 149, 318
BciT130I CCWGG 1 cut(s) 723
BcnI CCSGG 3 cut(s) 318, 377, 493
BcoDI GTCTC 6 cut(s) 22, 239, 271, 530, 662, 698
BfaI CTAG 2 cut(s) 213, 371
BfmI CTRYAG 1 cut(s) 781
BglII AGATCT 1 cut(s) 367
BisI GCNGC 6 cut(s) 191, 284, 339, 342, 402, 541
BlsI GCNGC 6 cut(s) 192, 285, 340, 343, 403, 542
Bme1390I CCNGG 4 cut(s) 318, 377, 493, 723
Bme18I GGWCC 3 cut(s) 169, 320, 770
BmgT120I GGNCC 6 cut(s) 135, 169, 188, 320, 770, 814
BmiI GGNNCC 4 cut(s) 99, 170, 321, 727
BmrFI CCNGG 4 cut(s) 318, 377, 493, 723
BmrI ACTGGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 392
BmuI ACTGGG 1 cut(s) 195
BpmI CTGGAG 1 cut(s) 644
Bpu10I CCTNAGC 1 cut(s) 356
BpuMI CCSGG 3 cut(s) 318, 377, 493
Bsa29I ATCGAT 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 3 cut(s) 22, 271, 698
BsaJI CCNNGG 2 cut(s) 194, 721
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 667, 807
Bse1I ACTGG 2 cut(s) 190, 772
BseAI TCCGGA 1 cut(s) 44
BseBI CCWGG 1 cut(s) 723
BseCI ATCGAT 1 cut(s) 62
BseDI CCNNGG 2 cut(s) 194, 721
BseGI GGATG 4 cut(s) 22, 383, 637, 816
BseLI CCNNNNNNNGG 3 cut(s) 241, 667, 807
BseMII CTCAG 1 cut(s) 370
BseNI ACTGG 2 cut(s) 190, 772
BseRI GAGGAG 5 cut(s) 214, 257, 572, 575, 578
BseX3I CGGCCG 1 cut(s) 314
BseXI GCAGC 1 cut(s) 388
Bsh1285I CGRYCG 4 cut(s) 62, 87, 166, 317
BshFI GGCC 6 cut(s) 136, 190, 316, 516, 680, 815
BshVI ATCGAT 1 cut(s) 62
BsiEI CGRYCG 4 cut(s) 62, 87, 166, 317
BsiHKAI GWGCWC 1 cut(s) 502
BsiSI CCGG 6 cut(s) 45, 274, 317, 376, 493, 513
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 3 cut(s) 241, 667, 807
BsmAI GTCTC 6 cut(s) 22, 239, 271, 530, 662, 698
BsmBI CGTCTC 2 cut(s) 239, 662
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 6 cut(s) 136, 190, 316, 516, 680, 815
Bso31I GGTCTC 3 cut(s) 22, 271, 698
Bsp1286I GDGCHC 1 cut(s) 502
Bsp13I TCCGGA 1 cut(s) 44
BspACI CCGC 8 cut(s) 191, 281, 284, 331, 339, 342, 541, 595
BspANI GGCC 6 cut(s) 136, 190, 316, 516, 680, 815
BspCNI CTCAG 1 cut(s) 369
BspDI ATCGAT 1 cut(s) 62
BspEI TCCGGA 1 cut(s) 44
BspLI GGNNCC 4 cut(s) 99, 170, 321, 727
BspPI GGATC 5 cut(s) 92, 105, 115, 244, 504
BspTNI GGTCTC 3 cut(s) 22, 271, 698
BsrI ACTGG 2 cut(s) 190, 772
BssECI CCNNGG 2 cut(s) 194, 721
BssNI GRCGYC 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 723
Bst4CI ACNGT 3 cut(s) 656, 676, 782
Bst6I CTCTTC 2 cut(s) 533, 636
BstACI GRCGYC 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 356, 465
BstF5I GGATG 4 cut(s) 22, 383, 637, 816
BstMAI GTCTC 6 cut(s) 22, 239, 271, 530, 662, 698
BstMCI CGRYCG 4 cut(s) 62, 87, 166, 317
BstMWI GCNNNNNNNGC 4 cut(s) 497, 546, 603, 677
BstNI CCWGG 1 cut(s) 723
BstSCI CCNGG 4 cut(s) 316, 375, 491, 721
BstSFI CTRYAG 1 cut(s) 781
BstV1I GCAGC 1 cut(s) 388
BstX2I RGATCY 2 cut(s) 97, 367
BstXI CCANNNNNNTGG 1 cut(s) 688
BstYI RGATCY 2 cut(s) 97, 367
BstZI CGGCCG 1 cut(s) 314
Bsu15I ATCGAT 1 cut(s) 62
BsuRI GGCC 6 cut(s) 136, 190, 316, 516, 680, 815
BsuTUI ATCGAT 1 cut(s) 62
BtsCI GGATG 4 cut(s) 22, 383, 637, 816
BtsIMutI CAGTG 1 cut(s) 681
Cfr13I GGNCC 6 cut(s) 135, 169, 188, 320, 770, 814
ClaI ATCGAT 1 cut(s) 62
Csp6I GTAC 1 cut(s) 454
CviAII CATG 1 cut(s) 609
CviJI RGCY 9 cut(s) 136, 190, 316, 444, 516, 606, 680, 815, 832
CviKI_1 RGCY 9 cut(s) 136, 190, 316, 444, 516, 606, 680, 815, 832
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 2 cut(s) 356, 465
DrdI GACNNNNNNGTC 1 cut(s) 785
DseDI GACNNNNNNGTC 1 cut(s) 785
EaeI YGGCCR 2 cut(s) 314, 678
EagI CGGCCG 1 cut(s) 314
Eam1104I CTCTTC 2 cut(s) 533, 636
EarI CTCTTC 2 cut(s) 533, 636
EclXI CGGCCG 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 194
Eco31I GGTCTC 3 cut(s) 22, 271, 698
Eco47I GGWCC 3 cut(s) 169, 320, 770
Eco52I CGGCCG 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 320
EcoRI GAATTC 1 cut(s) 820
EcoRII CCWGG 1 cut(s) 721
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
Esp3I CGTCTC 2 cut(s) 239, 662
FaeI CATG 1 cut(s) 612
FaiI YATR 6 cut(s) 128, 174, 460, 610, 651, 683
FaqI GGGAC 1 cut(s) 242
FatI CATG 1 cut(s) 608
Fnu4HI GCNGC 6 cut(s) 191, 284, 339, 342, 402, 541
FokI GGATG 4 cut(s) 9, 370, 624, 823
Fsp4HI GCNGC 6 cut(s) 191, 284, 339, 342, 402, 541
FspBI CTAG 2 cut(s) 213, 371
GluI GCNGC 6 cut(s) 191, 284, 339, 342, 402, 541
GsuI CTGGAG 1 cut(s) 644
HaeIII GGCC 6 cut(s) 136, 190, 316, 516, 680, 815
HapII CCGG 6 cut(s) 45, 274, 317, 376, 493, 513
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 1 cut(s) 612
HinfI GANTC 4 cut(s) 90, 204, 579, 786
HpaII CCGG 6 cut(s) 45, 274, 317, 376, 493, 513
HphI GGTGA 2 cut(s) 25, 112
Hpy188I TCNGA 9 cut(s) 27, 89, 97, 149, 156, 367, 578, 751, 778
Hpy188III TCNNGA 5 cut(s) 45, 258, 323, 371, 661
Hpy99I CGWCG 3 cut(s) 146, 149, 273
HpyAV CCTTC 4 cut(s) 358, 545, 608, 746
HpyCH4III ACNGT 3 cut(s) 656, 676, 782
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 462
HpyF10VI GCNNNNNNNGC 4 cut(s) 497, 546, 603, 677
HpyF3I CTNAG 2 cut(s) 356, 465
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 1 cut(s) 612
Kpn2I TCCGGA 1 cut(s) 44
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 1 cut(s) 392
MaeI CTAG 2 cut(s) 213, 371
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 763
MboII GAAGA 4 cut(s) 482, 520, 557, 623
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 2 cut(s) 97, 367
MhlI GDGCHC 1 cut(s) 502
MlsI TGGCCA 1 cut(s) 680
MluCI AATT 4 cut(s) 6, 51, 116, 820
MluNI TGGCCA 1 cut(s) 680
MlyI GAGTC 3 cut(s) 84, 573, 795
MmeI TCCRAC 2 cut(s) 127, 601
Mox20I TGGCCA 1 cut(s) 680
MroI TCCGGA 1 cut(s) 44
MroXI GAANNNNTTC 2 cut(s) 116, 756
MscI TGGCCA 1 cut(s) 680
MslI CAYNNNNRTG 2 cut(s) 125, 333
Msp20I TGGCCA 1 cut(s) 680
MspI CCGG 6 cut(s) 45, 274, 317, 376, 493, 513
MspR9I CCNGG 4 cut(s) 318, 377, 493, 723
MunI CAATTG 1 cut(s) 6
MvaI CCWGG 1 cut(s) 723
MwoI GCNNNNNNNGC 4 cut(s) 497, 546, 603, 677
NciI CCSGG 3 cut(s) 318, 377, 493
NlaIII CATG 1 cut(s) 612
NlaIV GGNNCC 4 cut(s) 99, 170, 321, 727
NmuCI GTSAC 1 cut(s) 763
OliI CACNNNNGTG 1 cut(s) 333
PdmI GAANNNNTTC 2 cut(s) 116, 756
PfeI GAWTC 1 cut(s) 204
PflFI GACNNNGTC 1 cut(s) 377
PkrI GCNGC 6 cut(s) 192, 285, 340, 343, 403, 542
Ple19I CGATCG 3 cut(s) 62, 87, 166
PleI GAGTC 3 cut(s) 84, 573, 794
PpsI GAGTC 3 cut(s) 84, 573, 794
PpuMI RGGWCCY 1 cut(s) 320
Psp5II RGGWCCY 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 721
PspGI CCWGG 1 cut(s) 721
PspN4I GGNNCC 4 cut(s) 99, 170, 321, 727
PspPI GGNCC 6 cut(s) 135, 169, 188, 320, 770, 814
PspPPI RGGWCCY 1 cut(s) 320
PsuI RGATCY 2 cut(s) 97, 367
PsyI GACNNNGTC 1 cut(s) 377
PvuI CGATCG 3 cut(s) 62, 87, 166
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
RseI CAYNNNNRTG 2 cut(s) 125, 333
SatI GCNGC 6 cut(s) 191, 284, 339, 342, 402, 541
Sau96I GGNCC 6 cut(s) 135, 169, 188, 320, 770, 814
SchI GAGTC 3 cut(s) 84, 573, 795
ScrFI CCNGG 4 cut(s) 318, 377, 493, 723
SduI GDGCHC 1 cut(s) 502
SfaNI GCATC 1 cut(s) 392
SfcI CTRYAG 1 cut(s) 781
SinI GGWCC 3 cut(s) 169, 320, 770
SmiMI CAYNNNNRTG 2 cut(s) 125, 333
Sse9I AATT 4 cut(s) 6, 51, 116, 820
SsiI CCGC 8 cut(s) 191, 281, 284, 331, 339, 342, 541, 595
SspMI CTAG 2 cut(s) 213, 371
StyD4I CCNGG 4 cut(s) 316, 375, 491, 721
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 3 cut(s) 656, 676, 782
TaiI ACGT 1 cut(s) 147
TaqI TCGA 6 cut(s) 62, 83, 110, 141, 797, 824
TasI AATT 4 cut(s) 6, 51, 116, 820
TauI GCSGC 5 cut(s) 193, 286, 341, 344, 543
TfiI GAWTC 1 cut(s) 204
TscAI CASTG 1 cut(s) 681
TseFI GTSAC 1 cut(s) 763
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 763
TspDTI ATGAA 3 cut(s) 143, 551, 842
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 1 cut(s) 681
Tth111I GACNNNGTC 1 cut(s) 377
VpaK11BI GGWCC 3 cut(s) 169, 320, 770
XapI RAATTY 2 cut(s) 116, 820
XbaI TCTAGA 1 cut(s) 370
XcmI CCANNNNNNNNNTGG 1 cut(s) 615
XmnI GAANNNNTTC 2 cut(s) 116, 756
XspI CTAG 2 cut(s) 213, 371
ZraI GACGTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.