Rmu_sc0037971.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037971.1
OG0001886
Physical Location & Seq
Reverse (-)
2459 .. 2725
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037971.1_g000002.1.cds

Sequence Viewer

Length: 267 bp
atggcagcggcttacgactacgagaacgagccgagatgggccgactattgggtcaacatcctcatccctcctcacatggcctctagccctaacgctgacgagctggacgagttggagtgccaagtaaccgaaatggcggtgaagattcaagagtaccgagccactataccggagcagctcaagaaaacactgccttccattatcgaagctcagagacccgtttcggctggtgggtcggagcctggggcgtccggggatccgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.72

Weight (kDa)

4.27

Isoelectric Point (pI)

59.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
AciI CCGC 2 cut(s) 8, 137
AclWI GGATC 2 cut(s) 251, 264
AcyI GRCGYC 1 cut(s) 248
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 1 cut(s) 149
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 3 cut(s) 103, 178, 209
AluI AGCT 3 cut(s) 103, 178, 209
Alw26I GTCTC 1 cut(s) 208
AlwI GGATC 2 cut(s) 251, 264
AoxI GGCC 2 cut(s) 39, 78
ApeKI GCWGC 2 cut(s) 5, 175
AspS9I GGNCC 1 cut(s) 39
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 151
BamHI GGATCC 1 cut(s) 256
BbvI GCAGC 2 cut(s) 17, 187
BccI CCATC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 243
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 1 cut(s) 84
BisI GCNGC 3 cut(s) 6, 9, 176
BlsI GCNGC 3 cut(s) 7, 10, 177
Bme1390I CCNGG 2 cut(s) 243, 253
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 2 cut(s) 240, 258
BmrFI CCNGG 2 cut(s) 243, 253
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 248
BsaI GGTCTC 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 242, 252
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 2 cut(s) 242, 252
BseGI GGATG 2 cut(s) 57, 63
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 224
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 2 cut(s) 17, 187
BshFI GGCC 2 cut(s) 41, 80
BsiSI CCGG 2 cut(s) 170, 252
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 208
BsnI GGCC 2 cut(s) 41, 80
Bso31I GGTCTC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 2 cut(s) 8, 137
BspANI GGCC 2 cut(s) 41, 80
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 240, 258
BspPI GGATC 2 cut(s) 251, 264
BspTNI GGTCTC 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 242, 252
BssMI GATC 1 cut(s) 256
BssNI GRCGYC 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 243
BstACI GRCGYC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 57, 63
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 1 cut(s) 256
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 2 cut(s) 241, 251
BstV1I GCAGC 2 cut(s) 17, 187
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 2 cut(s) 41, 80
BtsCI GGATG 2 cut(s) 57, 63
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 39
CseI GACGC 1 cut(s) 237
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 76
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
Eco31I GGTCTC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 241
FaeI CATG 1 cut(s) 79
FaiI YATR 2 cut(s) 77, 167
FatI CATG 1 cut(s) 75
Fnu4HI GCNGC 3 cut(s) 6, 9, 176
FokI GGATG 2 cut(s) 44, 50
Fsp4HI GCNGC 3 cut(s) 6, 9, 176
FspBI CTAG 1 cut(s) 84
GluI GCNGC 3 cut(s) 6, 9, 176
HaeIII GGCC 2 cut(s) 41, 80
HapII CCGG 2 cut(s) 170, 252
HgaI GACGC 1 cut(s) 237
Hin1I GRCGYC 1 cut(s) 248
Hin1II CATG 1 cut(s) 79
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 1 cut(s) 145
HpaII CCGG 2 cut(s) 170, 252
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 3 cut(s) 213, 238, 261
Hpy188III TCNNGA 2 cut(s) 149, 181
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 204
HpyF3I CTNAG 1 cut(s) 210
Hsp92I GRCGYC 1 cut(s) 248
Hsp92II CATG 1 cut(s) 79
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 2 cut(s) 172, 238
LpnPI CCDG 5 cut(s) 89, 183, 213, 228, 255
Lsp1109I GCAGC 2 cut(s) 17, 187
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 124
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 1 cut(s) 154
MflI RGATCY 1 cut(s) 256
MluCI AATT 1 cut(s) 262
MmeI TCCRAC 2 cut(s) 93, 216
MnlI CCTC 4 cut(s) 71, 78, 81, 91
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 2 cut(s) 170, 252
MspR9I CCNGG 2 cut(s) 243, 253
MvaI CCWGG 1 cut(s) 243
NciI CCSGG 1 cut(s) 253
NdeII GATC 1 cut(s) 256
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 2 cut(s) 240, 258
NmeAIII GCCGAG 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 3 cut(s) 7, 10, 177
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 240, 258
PspPI GGNCC 1 cut(s) 39
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 3 cut(s) 6, 9, 176
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 1 cut(s) 39
ScrFI CCNGG 2 cut(s) 243, 253
SetI ASST 3 cut(s) 105, 180, 211
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 262
SsiI CCGC 2 cut(s) 8, 137
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 241, 251
TaqI TCGA 1 cut(s) 204
TasI AATT 1 cut(s) 262
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 1 cut(s) 145
TscAI CASTG 1 cut(s) 195
TseI GCWGC 2 cut(s) 5, 175
TspRI CASTG 1 cut(s) 195
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.