Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002862.1

Orthogroup ID

OG0001886

Physical Location & Seq

Genomic Coordinates Forward (+)

14168 .. 14725

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002862.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ctgcatctccaaatctatctctctctctctccacctccctcacgcgcctcgccgccgccaactcctccgacccctccccttccttcgagtccacctccgccttcctctcctgcttccccatctccatgtcctccgtcaactcccaagtggactcaccgatcccacacacctcaaacccttcctcgaccaaatctccgcctccatctccgacctcgagaagctagttgccgagaacacctactcccctcgtacaaagttcgatcgtcgctgaaaacggacgacccacagaagctgaagaagatagcgacggcggcttacgactatgagaacaatccgagatgggccgactactgggccaacatcctcatccctcctcacatggcctctagccccgacgctgacgagctggtcgagttggagtgccaagtcaccgaaatggcggtgaagattcaagagtaccgagccactgtaccgaagcagctcaagaacacactaccttccattatcgaagctcagagacccgtttcggctgatgggtcgtgtaggtacaagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0121

Protein Analysis

185

Amino Acids

20.67

Weight (kDa)

9.23

Isoelectric Point (pI)

79.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01715 AT1G01715 AT4G00525
fragaria_vesca	FvH4_7g14190
malus_domestica	MD07G1138600.v1.1
prunus_persica	Prupe.2G168300_v2.0.a1 Prupe.2G168300_v2.0.a1
pyrus_communis	pycom07g13580
rosa_chinensis	RchiOBHm_Chr1g0355101
rosa_laevigata	RLG00000009237 RLG00000018609 RLG00000028177 RLG00000036631
rosa_multiflora	Rmu_sc0000718.1_g000006 Rmu_sc0000724.1_g000013 Rmu_sc0000735.1_g000022 Rmu_sc0002862.1_g000005 Rmu_sc0003031.1_g000060 Rmu_sc0003090.1_g000015 Rmu_sc0003115.1_g000033 Rmu_sc0006712.1_g000002 Rmu_sc0016725.1_g000006 Rmu_sc0037971.1_g000002 Rmu_sc0038418.1_g000001 Rmu_sc0042503.1_g000001 Rmu_ssc0000218.1_g000065 Rmu_ssc0000432.1_g000038
rosa_roxburghii	Rroxscaffold_1G00059090 Rroxscaffold_2G00111140 Rroxscaffold_4G00300670 Rroxscaffold_6G00399350
rosa_rugosa	Rorug01G0245100 Rorug05G0474400
rosa_samantha	Rh1BG226700 Rh1BG258500 Rh1CG096400 Rh1CG215400 Rh1CG241000 Rh1DG104000 Rh1DG254300 Rh2DG126500 Rh6DG072400 Rh7AG024200
rosa_wichuraiana	Rw0G011230 Rw1G022700 Rw2G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	407
AccII	CGCG	1 cut(s)	45
AciI	CCGC	6 cut(s)	53, 56, 98, 196, 311, 440
AclWI	GGATC	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	4 cut(s)	251, 458, 471, 548
AfiI	CCNNNNNNNGG	1 cut(s)	351
AgsI	TTSAA	1 cut(s)	452
AloI	GAACNNNNNNTCC	2 cut(s)	225, 257
AluBI	AGCT	5 cut(s)	221, 292, 406, 481, 512
AluI	AGCT	5 cut(s)	221, 292, 406, 481, 512
Alw26I	GTCTC	1 cut(s)	511
AlwI	GGATC	1 cut(s)	153
AlwNI	CAGNNNCTG	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	3 cut(s)	342, 354, 381
ApeKI	GCWGC	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	342, 354
AsuHPI	GGTGA	3 cut(s)	146, 421, 454
AvaI	CYCGRG	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	4 cut(s)	127, 210, 333, 527
BceAI	ACGGC	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	511
BfaI	CTAG	2 cut(s)	222, 387
BisI	GCNGC	4 cut(s)	53, 56, 312, 479
BlsI	GCNGC	4 cut(s)	54, 57, 313, 480
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	2 cut(s)	342, 354
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	13
BmuI	ACTGGG	1 cut(s)	361
BplI	GAGNNNNNCTC	2 cut(s)	79, 111
BpuEI	CTTGAG	1 cut(s)	467
BsaI	GGTCTC	1 cut(s)	511
BsaXI	ACNNNNNCTCC	4 cut(s)	177, 207, 225, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
Bse1I	ACTGG	1 cut(s)	356
BseGI	GGATG	2 cut(s)	360, 366
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	2 cut(s)	54, 363
BseXI	GCAGC	1 cut(s)	490
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	3 cut(s)	344, 356, 383
BsiEI	CGRYCG	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	351
BsmAI	GTCTC	1 cut(s)	511
BsnI	GGCC	3 cut(s)	344, 356, 383
Bso31I	GGTCTC	1 cut(s)	511
BsoBI	CYCGRG	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	158, 260
BspACI	CCGC	6 cut(s)	53, 56, 98, 196, 311, 440
BspANI	GGCC	3 cut(s)	344, 356, 383
BspCNI	CTCAG	1 cut(s)	526
BspFNI	CGCG	1 cut(s)	45
BspPI	GGATC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	511
BsrI	ACTGG	1 cut(s)	356
BssMI	GATC	2 cut(s)	158, 260
Bst4CI	ACNGT	1 cut(s)	469
BstDEI	CTNAG	1 cut(s)	513
BstF5I	GGATG	2 cut(s)	360, 366
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	161, 263
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	2 cut(s)	158, 260
BstMCI	CGRYCG	1 cut(s)	263
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	490
BsuRI	GGCC	3 cut(s)	344, 356, 383
BtsCI	GGATG	2 cut(s)	360, 366
BtsIMutI	CAGTG	1 cut(s)	465
CaiI	CAGNNNCTG	1 cut(s)	292
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	342, 354
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	4 cut(s)	250, 457, 470, 547
CviAII	CATG	2 cut(s)	126, 379
CviQI	GTAC	4 cut(s)	250, 457, 470, 547
DdeI	CTNAG	1 cut(s)	513
DpnI	GATC	2 cut(s)	160, 262
DpnII	GATC	2 cut(s)	158, 260
DrdI	GACNNNNNNGTC	1 cut(s)	407
DseDI	GACNNNNNNGTC	1 cut(s)	407
EciI	GGCGGA	2 cut(s)	87, 185
Eco31I	GGTCTC	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	213
FaeI	CATG	2 cut(s)	129, 382
FaiI	YATR	3 cut(s)	127, 324, 380
FatI	CATG	2 cut(s)	125, 378
Fnu4HI	GCNGC	4 cut(s)	53, 56, 312, 479
FokI	GGATG	2 cut(s)	347, 353
Fsp4HI	GCNGC	4 cut(s)	53, 56, 312, 479
FspBI	CTAG	2 cut(s)	222, 387
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	4 cut(s)	53, 56, 312, 479
HaeIII	GGCC	3 cut(s)	344, 356, 383
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	129, 382
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	3 cut(s)	88, 151, 448
HphI	GGTGA	3 cut(s)	146, 421, 454
Hpy166II	GTNNAC	3 cut(s)	92, 138, 150
Hpy188I	TCNGA	4 cut(s)	69, 209, 336, 516
Hpy188III	TCNNGA	3 cut(s)	215, 452, 484
Hpy8I	GTNNAC	3 cut(s)	92, 138, 150
Hpy99I	CGWCG	3 cut(s)	268, 310, 398
HpyAV	CCTTC	5 cut(s)	89, 93, 111, 188, 507
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	513
Hsp92II	CATG	2 cut(s)	129, 382
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	158, 260
LpnPI	CCDG	3 cut(s)	123, 337, 392
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	222, 387
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	2 cut(s)	160, 262
MboI	GATC	2 cut(s)	158, 260
MboII	GAAGA	3 cut(s)	307, 310, 457
MlyI	GAGTC	2 cut(s)	97, 145
MmeI	TCCRAC	3 cut(s)	92, 232, 396
MslI	CAYNNNNRTG	2 cut(s)	124, 434
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	2 cut(s)	158, 260
NlaIII	CATG	2 cut(s)	129, 382
NmeAIII	GCCGAG	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	427
PaeR7I	CTCGAG	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	448
PkrI	GCNGC	4 cut(s)	54, 57, 313, 480
Ple19I	CGATCG	1 cut(s)	263
PleI	GAGTC	2 cut(s)	96, 145
PpsI	GAGTC	2 cut(s)	96, 145
PspPI	GGNCC	2 cut(s)	342, 354
PstNI	CAGNNNCTG	1 cut(s)	292
PvuI	CGATCG	1 cut(s)	263
RsaI	GTAC	4 cut(s)	251, 458, 471, 548
RsaNI	GTAC	4 cut(s)	250, 457, 470, 547
RseI	CAYNNNNRTG	2 cut(s)	124, 434
SatI	GCNGC	4 cut(s)	53, 56, 312, 479
Sau3AI	GATC	2 cut(s)	158, 260
Sau96I	GGNCC	2 cut(s)	342, 354
SchI	GAGTC	2 cut(s)	97, 145
SfaNI	GCATC	1 cut(s)	13
Sfr274I	CTCGAG	1 cut(s)	213
SlaI	CTCGAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	2 cut(s)	124, 434
SmlI	CTYRAG	2 cut(s)	213, 482
SmoI	CTYRAG	2 cut(s)	213, 482
SsiI	CCGC	6 cut(s)	53, 56, 98, 196, 311, 440
SspMI	CTAG	2 cut(s)	222, 387
TaaI	ACNGT	1 cut(s)	469
TaqI	TCGA	6 cut(s)	86, 184, 214, 259, 411, 507
TauI	GCSGC	3 cut(s)	55, 58, 314
TfiI	GAWTC	1 cut(s)	448
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	478
Tsp45I	GTSAC	1 cut(s)	427
TspGWI	ACGGA	2 cut(s)	123, 290
TspRI	CASTG	1 cut(s)	472
XhoI	CTCGAG	1 cut(s)	213
XspI	CTAG	2 cut(s)	222, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.