Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003090.1

Orthogroup ID

OG0001886

Physical Location & Seq

Genomic Coordinates Forward (+)

72978 .. 74778

Gene Structure 1801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003090.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgggggaggagagagacgacccacagaagctgaagaagatagcggcggcggcttacgacaacgagaacgacccgagatgggccgactattgggccaacatcctcatccctcctcacatggcctctagccctgacatcatcagccatttcaatcagaagttctataagcgttatattgtgagcagcccgctctctctgttctccccgccgacgtcggagatcggagaaccgatcgggtccgaaaacactcaactgcgccaccttgcagcgccgccgtggaggagaatcggtgctagaggacaccagagggacgaccagacggaggagacgatcctatctggaaagtttcatcgccggagaccgccgcagttcgccggaaaagctgggtcaggtcggcagggtccgggtcgggtcagtcggatattttcatttttgaaggtgcagctgagagagaatagagagagatatcagtttccggaaatggaaaccaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0121

Protein Analysis

164

Amino Acids

18.9

Weight (kDa)

9.73

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01715 AT1G01715 AT4G00525
fragaria_vesca	FvH4_7g14190
malus_domestica	MD07G1138600.v1.1
prunus_persica	Prupe.2G168300_v2.0.a1 Prupe.2G168300_v2.0.a1
pyrus_communis	pycom07g13580
rosa_chinensis	RchiOBHm_Chr1g0355101
rosa_laevigata	RLG00000009237 RLG00000018609 RLG00000028177 RLG00000036631
rosa_multiflora	Rmu_sc0000718.1_g000006 Rmu_sc0000724.1_g000013 Rmu_sc0000735.1_g000022 Rmu_sc0002862.1_g000005 Rmu_sc0003031.1_g000060 Rmu_sc0003090.1_g000015 Rmu_sc0003115.1_g000033 Rmu_sc0006712.1_g000002 Rmu_sc0016725.1_g000006 Rmu_sc0037971.1_g000002 Rmu_sc0038418.1_g000001 Rmu_sc0042503.1_g000001 Rmu_ssc0000218.1_g000065 Rmu_ssc0000432.1_g000038
rosa_roxburghii	Rroxscaffold_1G00059090 Rroxscaffold_2G00111140 Rroxscaffold_4G00300670 Rroxscaffold_6G00399350
rosa_rugosa	Rorug01G0245100 Rorug05G0474400
rosa_samantha	Rh1BG226700 Rh1BG258500 Rh1CG096400 Rh1CG215400 Rh1CG241000 Rh1DG104000 Rh1DG254300 Rh2DG126500 Rh6DG072400 Rh7AG024200
rosa_wichuraiana	Rw0G011230 Rw1G022700 Rw2G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	215
AccBSI	CCGCTC	1 cut(s)	190
AccIII	TCCGGA	1 cut(s)	475
AciI	CCGC	8 cut(s)	44, 47, 50, 188, 206, 272, 362, 365
AclWI	GGATC	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	53
AcyI	GRCGYC	1 cut(s)	212
AfiI	CCNNNNNNNGG	3 cut(s)	79, 90, 322
AgsI	TTSAA	2 cut(s)	151, 436
AluBI	AGCT	3 cut(s)	31, 383, 445
AluI	AGCT	3 cut(s)	31, 383, 445
Alw26I	GTCTC	3 cut(s)	9, 320, 352
AlwI	GGATC	1 cut(s)	325
AlwNI	CAGNNNCTG	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	73
Aor13HI	TCCGGA	1 cut(s)	475
AoxI	GGCC	3 cut(s)	81, 93, 120
ApeKI	GCWGC	3 cut(s)	183, 266, 442
AspLEI	GCGC	2 cut(s)	258, 271
AspS9I	GGNCC	4 cut(s)	81, 93, 237, 401
AsuC2I	CCSGG	1 cut(s)	405
AvaI	CYCGRG	1 cut(s)	73
AvaII	GGWCC	2 cut(s)	237, 401
BbvI	GCAGC	3 cut(s)	195, 278, 454
BccI	CCATC	1 cut(s)	72
BceAI	ACGGC	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	405
BcoDI	GTCTC	3 cut(s)	9, 320, 352
BfaI	CTAG	2 cut(s)	126, 294
BfoI	RGCGCY	1 cut(s)	272
BisI	GCNGC	8 cut(s)	45, 48, 51, 184, 267, 272, 365, 443
BlsI	GCNGC	8 cut(s)	46, 49, 52, 185, 268, 273, 366, 444
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	2 cut(s)	237, 401
BmeT110I	CYCGRG	1 cut(s)	73
BmgT120I	GGNCC	4 cut(s)	81, 93, 237, 401
BmiI	GGNNCC	2 cut(s)	238, 402
BmrFI	CCNGG	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	405
BsaHI	GRCGYC	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	275
BsaWI	WCCGGW	1 cut(s)	475
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 90, 322
BseAI	TCCGGA	1 cut(s)	475
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	2 cut(s)	99, 105
BseLI	CCNNNNNNNGG	3 cut(s)	79, 90, 322
BseMII	CTCAG	1 cut(s)	437
BseRI	GAGGAG	4 cut(s)	23, 102, 295, 338
BseXI	GCAGC	3 cut(s)	195, 278, 454
BseYI	CCCAGC	1 cut(s)	383
BsgI	GTGCAG	1 cut(s)	461
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	83, 95, 122
BsiEI	CGRYCG	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	73
BsiSI	CCGG	4 cut(s)	355, 375, 404, 476
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	3 cut(s)	79, 90, 322
BsmAI	GTCTC	3 cut(s)	9, 320, 352
BsmBI	CGTCTC	2 cut(s)	9, 320
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	3 cut(s)	83, 95, 122
Bso31I	GGTCTC	1 cut(s)	352
BsoBI	CYCGRG	1 cut(s)	73
Bsp13I	TCCGGA	1 cut(s)	475
Bsp143I	GATC	3 cut(s)	219, 231, 330
BspACI	CCGC	8 cut(s)	44, 47, 50, 188, 206, 272, 362, 365
BspANI	GGCC	3 cut(s)	83, 95, 122
BspCNI	CTCAG	1 cut(s)	438
BspEI	TCCGGA	1 cut(s)	475
BspLI	GGNNCC	2 cut(s)	238, 402
BspPI	GGATC	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	352
BsrBI	CCGCTC	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	3 cut(s)	219, 231, 330
BssNI	GRCGYC	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	446
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	99, 105
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	2 cut(s)	258, 271
BstKTI	GATC	3 cut(s)	222, 234, 333
BstMAI	GTCTC	3 cut(s)	9, 320, 352
BstMBI	GATC	3 cut(s)	219, 231, 330
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 380
BstSCI	CCNGG	1 cut(s)	403
BstV1I	GCAGC	3 cut(s)	195, 278, 454
BsuRI	GGCC	3 cut(s)	83, 95, 122
BtgI	CCRYGG	1 cut(s)	275
BtgZI	GCGATG	1 cut(s)	335
BtsCI	GGATG	2 cut(s)	99, 105
Cac8I	GCNNGC	1 cut(s)	188
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	2 cut(s)	258, 271
Cfr13I	GGNCC	4 cut(s)	81, 93, 237, 401
CviAII	CATG	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	3 cut(s)	221, 233, 332
DpnII	GATC	3 cut(s)	219, 231, 330
Eco31I	GGTCTC	1 cut(s)	352
Eco32I	GATATC	1 cut(s)	467
Eco47I	GGWCC	2 cut(s)	237, 401
Eco57I	CTGAAG	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	73
EcoRV	GATATC	1 cut(s)	467
Esp3I	CGTCTC	2 cut(s)	9, 320
FaeI	CATG	1 cut(s)	121
FaiI	YATR	3 cut(s)	119, 165, 174
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	1 cut(s)	117
FauI	CCCGC	2 cut(s)	195, 213
Fnu4HI	GCNGC	8 cut(s)	45, 48, 51, 184, 267, 272, 365, 443
FokI	GGATG	2 cut(s)	86, 92
Fsp4HI	GCNGC	8 cut(s)	45, 48, 51, 184, 267, 272, 365, 443
FspBI	CTAG	2 cut(s)	126, 294
GlaI	GCGC	2 cut(s)	257, 270
GluI	GCNGC	8 cut(s)	45, 48, 51, 184, 267, 272, 365, 443
GsaI	CCCAGC	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	3 cut(s)	83, 95, 122
HapII	CCGG	4 cut(s)	355, 375, 404, 476
HhaI	GCGC	2 cut(s)	258, 271
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	121
Hin6I	GCGC	2 cut(s)	256, 269
HinP1I	GCGC	2 cut(s)	256, 269
HinfI	GANTC	1 cut(s)	285
HpaII	CCGG	4 cut(s)	355, 375, 404, 476
Hpy188I	TCNGA	5 cut(s)	156, 217, 224, 241, 420
Hpy188III	TCNNGA	2 cut(s)	339, 476
Hpy99I	CGWCG	2 cut(s)	214, 217
HpyAV	CCTTC	1 cut(s)	430
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	266, 442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 380
HpyF3I	CTNAG	1 cut(s)	446
HpySE526I	ACGT	1 cut(s)	212
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	121
HspAI	GCGC	2 cut(s)	256, 269
Kpn2I	TCCGGA	1 cut(s)	475
Kzo9I	GATC	3 cut(s)	219, 231, 330
Lsp1109I	GCAGC	3 cut(s)	195, 278, 454
MaeI	CTAG	2 cut(s)	126, 294
MaeII	ACGT	1 cut(s)	212
MalI	GATC	3 cut(s)	221, 233, 332
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	3 cut(s)	219, 231, 330
MboII	GAAGA	2 cut(s)	46, 49
MmeI	TCCRAC	2 cut(s)	195, 398
MnlI	CCTC	8 cut(s)	113, 120, 123, 133, 273, 290, 300, 316
MroI	TCCGGA	1 cut(s)	475
MspA1I	CMGCKG	1 cut(s)	445
MspI	CCGG	4 cut(s)	355, 375, 404, 476
MspR9I	CCNGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	50, 380
NciI	CCSGG	1 cut(s)	405
NdeII	GATC	3 cut(s)	219, 231, 330
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	2 cut(s)	238, 402
PcsI	WCGNNNNNNNCGW	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	8 cut(s)	46, 49, 52, 185, 268, 273, 366, 444
Ple19I	CGATCG	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	383
PspN4I	GGNNCC	2 cut(s)	238, 402
PspPI	GGNCC	4 cut(s)	81, 93, 237, 401
PstNI	CAGNNNCTG	1 cut(s)	31
PvuI	CGATCG	1 cut(s)	234
PvuII	CAGCTG	1 cut(s)	445
SatI	GCNGC	8 cut(s)	45, 48, 51, 184, 267, 272, 365, 443
Sau3AI	GATC	3 cut(s)	219, 231, 330
Sau96I	GGNCC	4 cut(s)	81, 93, 237, 401
ScrFI	CCNGG	1 cut(s)	405
SetI	ASST	7 cut(s)	33, 215, 264, 385, 394, 441, 447
SinI	GGWCC	2 cut(s)	237, 401
SsiI	CCGC	8 cut(s)	44, 47, 50, 188, 206, 272, 362, 365
SspMI	CTAG	2 cut(s)	126, 294
StyD4I	CCNGG	1 cut(s)	403
TaiI	ACGT	1 cut(s)	215
TauI	GCSGC	5 cut(s)	47, 50, 53, 274, 367
TfiI	GAWTC	1 cut(s)	285
TseI	GCWGC	3 cut(s)	183, 266, 442
TspDTI	ATGAA	2 cut(s)	338, 417
TspGWI	ACGGA	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	237, 401
XspI	CTAG	2 cut(s)	126, 294
ZraI	GACGTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.