Rroxscaffold_2G00111140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001886
Physical Location & Seq
Forward (+)
35682854 .. 35683361
508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111140.1

Sequence Viewer

Length: 489 bp
ATGGCGTTCGCTGTCCTCATCGGCGAGTCCTTTGGACTCGAGAATCTCTCTTCTTCAACCATCGAGTTGCTGCACCCTAATCTCGGCGTTTTGGATTTGGGATTCAACCCCTACGGGCTTTGCCCATGCTACGCTACTCCTGTTTCGGCGCCGTGGTTTAGTGGATCCAAATCGGACATGGGATTCCGGTCCTTTCATGGGAAAAGACACCGAGTTCGGGTCTTCTCCGAGGGCGGTGATTCGACGTCCGGTGCCGATGGGTTGCTTCGGCGGTGGATGGTGACTTTGTGTGCGGATCCTCTCCGATGGCGTCCTAGTTACAATGGATATGGTGGTCGAGATCTTTGGAGCCGAAGGTTGGAGCGCTTGGGCCAACAGATTACTATGGGAATCTCATTCCGAGATCGACCCGGCCTTGGCGGAAATGCAGCGGTGCTGTTCGGTGGGGTAGCATTGCATATCCGGAAGGGTGGCCCGACGTCGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.63

Weight (kDa)

9.5

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 248, 482
AccB1I GGYRCC 2 cut(s) 148, 251
AccIII TCCGGA 1 cut(s) 462
AciI CCGC 5 cut(s) 234, 271, 293, 420, 431
AclWI GGATC 4 cut(s) 159, 172, 290, 303
AcyI GRCGYC 4 cut(s) 149, 245, 310, 479
AfeI AGCGCT 1 cut(s) 365
AfiI CCNNNNNNNGG 6 cut(s) 83, 198, 217, 358, 416, 481
AgsI TTSAA 2 cut(s) 57, 106
AlwI GGATC 4 cut(s) 159, 172, 290, 303
Ama87I CYCGRG 1 cut(s) 38
Aor13HI TCCGGA 1 cut(s) 462
Aor51HI AGCGCT 1 cut(s) 365
AoxI GGCC 3 cut(s) 370, 412, 472
ApeKI GCWGC 2 cut(s) 70, 428
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
AspLEI GCGC 2 cut(s) 151, 366
AspS9I GGNCC 3 cut(s) 189, 370, 473
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 2 cut(s) 248, 292
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 1 cut(s) 189
BamHI GGATCC 2 cut(s) 164, 295
BanI GGYRCC 2 cut(s) 148, 251
BbsI GAAGAC 1 cut(s) 214
BbvI GCAGC 2 cut(s) 57, 440
BccI CCATC 4 cut(s) 68, 251, 271, 300
BceAI ACGGC 1 cut(s) 136
BcnI CCSGG 1 cut(s) 411
BfaI CTAG 1 cut(s) 315
BfoI RGCGCY 2 cut(s) 152, 367
BglII AGATCT 1 cut(s) 340
BisI GCNGC 2 cut(s) 71, 429
BlsI GCNGC 2 cut(s) 72, 430
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 1 cut(s) 189
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 3 cut(s) 189, 370, 473
BmiI GGNNCC 5 cut(s) 150, 166, 253, 297, 350
BmrFI CCNGG 1 cut(s) 411
BpiI GAAGAC 1 cut(s) 214
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpuMI CCSGG 1 cut(s) 411
BsaBI GATNNNNATC 1 cut(s) 169
BsaHI GRCGYC 4 cut(s) 149, 245, 310, 479
BsaJI CCNNGG 3 cut(s) 152, 228, 415
BsaWI WCCGGW 3 cut(s) 186, 248, 462
Bsc4I CCNNNNNNNGG 6 cut(s) 83, 198, 217, 358, 416, 481
Bse3DI GCAATG 1 cut(s) 452
Bse8I GATNNNNATC 1 cut(s) 169
BseAI TCCGGA 1 cut(s) 462
BseDI CCNNGG 3 cut(s) 152, 228, 415
BseGI GGATG 1 cut(s) 282
BseJI GATNNNNATC 1 cut(s) 169
BseLI CCNNNNNNNGG 6 cut(s) 83, 198, 217, 358, 416, 481
BseMI GCAATG 1 cut(s) 452
BseXI GCAGC 2 cut(s) 57, 440
BsgI GTGCAG 1 cut(s) 56
BshFI GGCC 3 cut(s) 372, 414, 474
BshNI GGYRCC 2 cut(s) 148, 251
BsiHKCI CYCGRG 1 cut(s) 38
BsiSI CCGG 4 cut(s) 187, 249, 411, 463
BslI CCNNNNNNNGG 6 cut(s) 83, 198, 217, 358, 416, 481
BsnI GGCC 3 cut(s) 372, 414, 474
BsoBI CYCGRG 1 cut(s) 38
Bsp13I TCCGGA 1 cut(s) 462
Bsp143I GATC 4 cut(s) 164, 295, 340, 403
BspACI CCGC 5 cut(s) 234, 271, 293, 420, 431
BspANI GGCC 3 cut(s) 372, 414, 474
BspEI TCCGGA 1 cut(s) 462
BspLI GGNNCC 5 cut(s) 150, 166, 253, 297, 350
BspPI GGATC 4 cut(s) 159, 172, 290, 303
BspT107I GGYRCC 2 cut(s) 148, 251
BsrDI GCAATG 1 cut(s) 452
BssECI CCNNGG 3 cut(s) 152, 228, 415
BssMI GATC 4 cut(s) 164, 295, 340, 403
BssNI GRCGYC 4 cut(s) 149, 245, 310, 479
BssT1I CCWWGG 1 cut(s) 415
Bst6I CTCTTC 1 cut(s) 55
BstACI GRCGYC 4 cut(s) 149, 245, 310, 479
BstDSI CCRYGG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 282
BstH2I RGCGCY 2 cut(s) 152, 367
BstHHI GCGC 2 cut(s) 151, 366
BstKTI GATC 4 cut(s) 167, 298, 343, 406
BstMBI GATC 4 cut(s) 164, 295, 340, 403
BstSCI CCNGG 1 cut(s) 409
BstV1I GCAGC 2 cut(s) 57, 440
BstV2I GAAGAC 1 cut(s) 214
BstX2I RGATCY 3 cut(s) 164, 295, 340
BstYI RGATCY 3 cut(s) 164, 295, 340
BsuRI GGCC 3 cut(s) 372, 414, 474
BtgI CCRYGG 1 cut(s) 152
BtsCI GGATG 1 cut(s) 282
CfoI GCGC 2 cut(s) 151, 366
Cfr13I GGNCC 3 cut(s) 189, 370, 473
CseI GACGC 1 cut(s) 299
CviAII CATG 3 cut(s) 126, 178, 197
CviJI RGCY 5 cut(s) 118, 351, 372, 414, 474
CviKI_1 RGCY 5 cut(s) 118, 351, 372, 414, 474
DinI GGCGCC 1 cut(s) 150
DpnI GATC 4 cut(s) 166, 297, 342, 405
DpnII GATC 4 cut(s) 164, 295, 340, 403
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
EciI GGCGGA 1 cut(s) 435
Eco130I CCWWGG 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 189
Eco47III AGCGCT 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 415
EgeI GGCGCC 1 cut(s) 150
EheI GGCGCC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 3 cut(s) 129, 181, 200
FaiI YATR 6 cut(s) 127, 179, 198, 330, 386, 459
FatI CATG 3 cut(s) 125, 177, 196
Fnu4HI GCNGC 2 cut(s) 71, 429
FokI GGATG 1 cut(s) 289
Fsp4HI GCNGC 2 cut(s) 71, 429
FspBI CTAG 1 cut(s) 315
GlaI GCGC 2 cut(s) 150, 365
GluI GCNGC 2 cut(s) 71, 429
HaeII RGCGCY 2 cut(s) 152, 367
HaeIII GGCC 3 cut(s) 372, 414, 474
HapII CCGG 4 cut(s) 187, 249, 411, 463
HgaI GACGC 1 cut(s) 299
HhaI GCGC 2 cut(s) 151, 366
Hin1I GRCGYC 4 cut(s) 149, 245, 310, 479
Hin1II CATG 3 cut(s) 129, 181, 200
Hin6I GCGC 2 cut(s) 149, 364
HinP1I GCGC 2 cut(s) 149, 364
HinfI GANTC 7 cut(s) 26, 36, 43, 102, 183, 239, 390
HpaII CCGG 4 cut(s) 187, 249, 411, 463
HphI GGTGA 2 cut(s) 248, 292
Hpy188I TCNGA 5 cut(s) 175, 229, 305, 401, 484
Hpy188III TCNNGA 3 cut(s) 40, 338, 463
Hpy99I CGWCG 3 cut(s) 247, 481, 484
HpyAV CCTTC 2 cut(s) 348, 460
HpyCH4IV ACGT 2 cut(s) 245, 479
HpyCH4V TGCA 3 cut(s) 73, 428, 457
HpySE526I ACGT 2 cut(s) 245, 479
Hsp92I GRCGYC 4 cut(s) 149, 245, 310, 479
Hsp92II CATG 3 cut(s) 129, 181, 200
HspAI GCGC 2 cut(s) 149, 364
KasI GGCGCC 1 cut(s) 148
Kpn2I TCCGGA 1 cut(s) 462
Kzo9I GATC 4 cut(s) 164, 295, 340, 403
LmnI GCTCC 2 cut(s) 348, 361
LpnPI CCDG 5 cut(s) 153, 200, 262, 424, 476
Lsp1109I GCAGC 2 cut(s) 57, 440
MaeI CTAG 1 cut(s) 315
MaeII ACGT 2 cut(s) 245, 479
MaeIII GTNAC 2 cut(s) 280, 317
MalI GATC 4 cut(s) 166, 297, 342, 405
MboI GATC 4 cut(s) 164, 295, 340, 403
MboII GAAGA 3 cut(s) 42, 45, 214
MflI RGATCY 3 cut(s) 164, 295, 340
Mly113I GGCGCC 1 cut(s) 149
MlyI GAGTC 2 cut(s) 30, 35
MmeI TCCRAC 2 cut(s) 339, 462
MnlI CCTC 3 cut(s) 26, 223, 309
MroI TCCGGA 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 4 cut(s) 187, 249, 411, 463
MspR9I CCNGG 1 cut(s) 411
NarI GGCGCC 1 cut(s) 149
NciI CCSGG 1 cut(s) 411
NdeII GATC 4 cut(s) 164, 295, 340, 403
NlaIII CATG 3 cut(s) 129, 181, 200
NlaIV GGNNCC 5 cut(s) 150, 166, 253, 297, 350
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 280
PaeR7I CTCGAG 1 cut(s) 38
PfeI GAWTC 5 cut(s) 43, 102, 183, 239, 390
PkrI GCNGC 2 cut(s) 72, 430
PleI GAGTC 2 cut(s) 30, 34
PluTI GGCGCC 1 cut(s) 152
PpsI GAGTC 2 cut(s) 30, 34
PspN4I GGNNCC 5 cut(s) 150, 166, 253, 297, 350
PspPI GGNCC 3 cut(s) 189, 370, 473
PsuI RGATCY 3 cut(s) 164, 295, 340
SatI GCNGC 2 cut(s) 71, 429
Sau3AI GATC 4 cut(s) 164, 295, 340, 403
Sau96I GGNCC 3 cut(s) 189, 370, 473
SchI GAGTC 2 cut(s) 30, 35
ScrFI CCNGG 1 cut(s) 411
SetI ASST 3 cut(s) 248, 359, 482
SfoI GGCGCC 1 cut(s) 150
Sfr274I CTCGAG 1 cut(s) 38
SinI GGWCC 1 cut(s) 189
SlaI CTCGAG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SsiI CCGC 5 cut(s) 234, 271, 293, 420, 431
SspDI GGCGCC 1 cut(s) 148
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 409
StyI CCWWGG 1 cut(s) 415
TaiI ACGT 2 cut(s) 248, 482
TaqI TCGA 5 cut(s) 39, 63, 242, 337, 406
TfiI GAWTC 5 cut(s) 43, 102, 183, 239, 390
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 70, 428
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XhoI CTCGAG 1 cut(s) 38
XspI CTAG 1 cut(s) 315
ZraI GACGTC 2 cut(s) 246, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.