Rmu_sc0042503.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042503.1
OG0001886
Physical Location & Seq
Forward (+)
1 .. 247
247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042503.1_g000001.1.cds

Sequence Viewer

Length: 247 bp
gaccaacatcctcatccctcctcacatggcatttagcctcgacgccgacgagttggacgagttggagtgccaagtcaccgatatggcggtgaagattcaagagttccgagccactgtaccggagcagctcaagaacacgctgccttccattatcgaagctcagagacccgtttcaactgatgggtcgaagcctgggacgtccggggatccaaattcgggtaaaggtctgtgttttttgggttgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.69

Weight (kDa)

4.42

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 201
AciI CCGC 1 cut(s) 87
AclWI GGATC 2 cut(s) 201, 214
AcsI RAATTY 1 cut(s) 212
AcyI GRCGYC 2 cut(s) 43, 198
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 2 cut(s) 99, 175
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 2 cut(s) 128, 159
AluI AGCT 2 cut(s) 128, 159
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 2 cut(s) 201, 214
ApeKI GCWGC 2 cut(s) 125, 140
ApoI RAATTY 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 68, 101
BamHI GGATCC 1 cut(s) 206
BbvI GCAGC 2 cut(s) 127, 137
BccI CCATC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 193
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 158
BisI GCNGC 2 cut(s) 126, 141
BlsI GCNGC 2 cut(s) 127, 142
Bme1390I CCNGG 2 cut(s) 193, 203
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 2 cut(s) 193, 203
BpuEI CTTGAG 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 203
BsaHI GRCGYC 2 cut(s) 43, 198
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 192, 202
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 192, 202
BseGI GGATG 2 cut(s) 7, 13
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 2 cut(s) 127, 137
BsiSI CCGG 2 cut(s) 120, 202
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 206
BspACI CCGC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 2 cut(s) 201, 214
BspTNI GGTCTC 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 192, 202
BssMI GATC 1 cut(s) 206
BssNI GRCGYC 2 cut(s) 43, 198
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 116
BstACI GRCGYC 2 cut(s) 43, 198
BstDEI CTNAG 1 cut(s) 160
BstF5I GGATG 2 cut(s) 7, 13
BstKTI GATC 1 cut(s) 209
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 206
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 191, 201
BstV1I GCAGC 2 cut(s) 127, 137
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BtsCI GGATG 2 cut(s) 7, 13
BtsIMutI CAGTG 1 cut(s) 112
CseI GACGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 117
CviAII CATG 1 cut(s) 26
CviJI RGCY 5 cut(s) 37, 111, 128, 159, 191
CviKI_1 RGCY 5 cut(s) 37, 111, 128, 159, 191
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 1 cut(s) 160
DpnI GATC 1 cut(s) 208
DpnII GATC 1 cut(s) 206
Eco31I GGTCTC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 191
FaeI CATG 1 cut(s) 29
FaiI YATR 2 cut(s) 27, 84
FaqI GGGAC 1 cut(s) 209
FatI CATG 1 cut(s) 25
Fnu4HI GCNGC 2 cut(s) 126, 141
Fsp4HI GCNGC 2 cut(s) 126, 141
GluI GCNGC 2 cut(s) 126, 141
HapII CCGG 2 cut(s) 120, 202
HgaI GACGC 1 cut(s) 51
Hin1I GRCGYC 2 cut(s) 43, 198
Hin1II CATG 1 cut(s) 29
HinfI GANTC 1 cut(s) 95
HpaII CCGG 2 cut(s) 120, 202
HphI GGTGA 2 cut(s) 68, 101
Hpy188I TCNGA 2 cut(s) 108, 163
Hpy188III TCNNGA 2 cut(s) 99, 131
Hpy99I CGWCG 2 cut(s) 45, 51
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 2 cut(s) 43, 198
Hsp92II CATG 1 cut(s) 29
Kzo9I GATC 1 cut(s) 206
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 4 cut(s) 133, 178, 205, 215
Lsp1109I GCAGC 2 cut(s) 127, 137
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 208
MboI GATC 1 cut(s) 206
MboII GAAGA 1 cut(s) 104
MflI RGATCY 1 cut(s) 206
MluCI AATT 1 cut(s) 212
MmeI TCCRAC 2 cut(s) 34, 43
MnlI CCTC 4 cut(s) 21, 28, 31, 48
MslI CAYNNNNRTG 1 cut(s) 81
MspI CCGG 2 cut(s) 120, 202
MspR9I CCNGG 2 cut(s) 193, 203
MvaI CCWGG 1 cut(s) 193
NciI CCSGG 1 cut(s) 203
NdeII GATC 1 cut(s) 206
NlaIII CATG 1 cut(s) 29
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 74
PcsI WCGNNNNNNNCGW 2 cut(s) 46, 55
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 127, 142
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 208
PsuI RGATCY 1 cut(s) 206
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 81
SatI GCNGC 2 cut(s) 126, 141
Sau3AI GATC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 193, 203
SetI ASST 4 cut(s) 130, 161, 201, 227
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 1 cut(s) 212
SsiI CCGC 1 cut(s) 87
StyD4I CCNGG 2 cut(s) 191, 201
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 201
TaqI TCGA 3 cut(s) 40, 154, 186
TasI AATT 1 cut(s) 212
TfiI GAWTC 1 cut(s) 95
TscAI CASTG 1 cut(s) 119
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 2 cut(s) 125, 140
Tsp45I GTSAC 1 cut(s) 74
TspRI CASTG 1 cut(s) 119
XapI RAATTY 1 cut(s) 212
ZraI GACGTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.