Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003031.1

Orthogroup ID

OG0001886

Physical Location & Seq

Genomic Coordinates Forward (+)

216892 .. 217131

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003031.1_g000060.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

atgggggcggagagagatgacccacataagctgaagaagatagcggcggcagcttatgactacgagaatgacccgagatgggctgactactgggccaacatcctcatccctcctcacatggcctctagccctgacgtcatcagccatttcaagcagaagttctatactcgctatatagtgagcagcctgctctcactctattctgttatgctctgttcttcaatttcgaatctttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0121

Protein Analysis

79

Amino Acids

9.12

Weight (kDa)

6.81

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01715 AT1G01715 AT4G00525
fragaria_vesca	FvH4_7g14190
malus_domestica	MD07G1138600.v1.1
prunus_persica	Prupe.2G168300_v2.0.a1 Prupe.2G168300_v2.0.a1
pyrus_communis	pycom07g13580
rosa_chinensis	RchiOBHm_Chr1g0355101
rosa_laevigata	RLG00000009237 RLG00000018609 RLG00000028177 RLG00000036631
rosa_multiflora	Rmu_sc0000718.1_g000006 Rmu_sc0000724.1_g000013 Rmu_sc0000735.1_g000022 Rmu_sc0002862.1_g000005 Rmu_sc0003031.1_g000060 Rmu_sc0003090.1_g000015 Rmu_sc0003115.1_g000033 Rmu_sc0006712.1_g000002 Rmu_sc0016725.1_g000006 Rmu_sc0037971.1_g000002 Rmu_sc0038418.1_g000001 Rmu_sc0042503.1_g000001 Rmu_ssc0000218.1_g000065 Rmu_ssc0000432.1_g000038
rosa_roxburghii	Rroxscaffold_1G00059090 Rroxscaffold_2G00111140 Rroxscaffold_4G00300670 Rroxscaffold_6G00399350
rosa_rugosa	Rorug01G0245100 Rorug05G0474400
rosa_samantha	Rh1BG226700 Rh1BG258500 Rh1CG096400 Rh1CG215400 Rh1CG241000 Rh1DG104000 Rh1DG254300 Rh2DG126500 Rh6DG072400 Rh7AG024200
rosa_wichuraiana	Rw0G011230 Rw1G022700 Rw2G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	138
AciI	CCGC	3 cut(s)	8, 44, 47
AcuI	CTGAAG	1 cut(s)	53
AcyI	GRCGYC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	151, 222
AluBI	AGCT	2 cut(s)	31, 53
AluI	AGCT	2 cut(s)	31, 53
Ama87I	CYCGRG	1 cut(s)	73
AoxI	GGCC	2 cut(s)	93, 120
ApeKI	GCWGC	2 cut(s)	50, 183
AspS9I	GGNCC	1 cut(s)	93
AsuII	TTCGAA	1 cut(s)	227
AvaI	CYCGRG	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	62, 195
BccI	CCATC	1 cut(s)	72
BfaI	CTAG	2 cut(s)	126, 238
BisI	GCNGC	4 cut(s)	45, 48, 51, 184
BlsI	GCNGC	4 cut(s)	46, 49, 52, 185
BmeT110I	CYCGRG	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	93
BmrI	ACTGGG	1 cut(s)	100
BmuI	ACTGGG	1 cut(s)	100
Bpu14I	TTCGAA	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	95
BseGI	GGATG	2 cut(s)	99, 105
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	62, 195
BshFI	GGCC	2 cut(s)	95, 122
BsiHKCI	CYCGRG	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	79
BsnI	GGCC	2 cut(s)	95, 122
BsoBI	CYCGRG	1 cut(s)	73
Bsp119I	TTCGAA	1 cut(s)	227
BspACI	CCGC	3 cut(s)	8, 44, 47
BspANI	GGCC	2 cut(s)	95, 122
BspT104I	TTCGAA	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	95
BssNI	GRCGYC	1 cut(s)	135
BstACI	GRCGYC	1 cut(s)	135
BstBI	TTCGAA	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	99, 105
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	62, 195
BsuRI	GGCC	2 cut(s)	95, 122
BtsCI	GGATG	2 cut(s)	99, 105
Cac8I	GCNNGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	93
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	8 cut(s)	31, 53, 83, 95, 122, 129, 144, 186
CviKI_1	RGCY	8 cut(s)	31, 53, 83, 95, 122, 129, 144, 186
EciI	GGCGGA	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	73
FaeI	CATG	1 cut(s)	121
FaiI	YATR	7 cut(s)	27, 57, 119, 165, 174, 176, 209
FatI	CATG	1 cut(s)	117
Fnu4HI	GCNGC	4 cut(s)	45, 48, 51, 184
FokI	GGATG	2 cut(s)	86, 92
Fsp4HI	GCNGC	4 cut(s)	45, 48, 51, 184
FspBI	CTAG	2 cut(s)	126, 238
GluI	GCNGC	4 cut(s)	45, 48, 51, 184
HaeIII	GGCC	2 cut(s)	95, 122
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	121
HinfI	GANTC	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	121
LpnPI	CCDG	3 cut(s)	76, 144, 200
Lsp1109I	GCAGC	2 cut(s)	62, 195
MaeI	CTAG	2 cut(s)	126, 238
MaeII	ACGT	1 cut(s)	135
MboII	GAAGA	3 cut(s)	46, 49, 210
MluCI	AATT	1 cut(s)	222
MnlI	CCTC	4 cut(s)	113, 120, 123, 133
MwoI	GCNNNNNNNGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	121
NspV	TTCGAA	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	4 cut(s)	46, 49, 52, 185
PspPI	GGNCC	1 cut(s)	93
SatI	GCNGC	4 cut(s)	45, 48, 51, 184
Sau96I	GGNCC	1 cut(s)	93
SetI	ASST	3 cut(s)	33, 55, 138
SfuI	TTCGAA	1 cut(s)	227
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	3 cut(s)	8, 44, 47
SspMI	CTAG	2 cut(s)	126, 238
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	227
TasI	AATT	1 cut(s)	222
TauI	GCSGC	2 cut(s)	47, 50
TfiI	GAWTC	1 cut(s)	229
TseI	GCWGC	2 cut(s)	50, 183
XspI	CTAG	2 cut(s)	126, 238
ZraI	GACGTC	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.