Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001886

Physical Location & Seq

Genomic Coordinates Forward (+)

12555380 .. 12557505

Gene Structure 2126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAGCCGAACGGATCCGAACCCGGATCCGAGGCCGACAAGCTGGAGGAGTTGAGGGAAATGGCGGAGAAGATTCAAGAGTACCGGGCCACTCTACCGGAGCAGCTCAGGAAAACGCTGCCGTCTTTTATCGAAGCTCAAAGACCCGTTTTGGGTGATGGGTCGGAGCCTGGGACGTCTGGGGCTCCGTTTTCGGGACACATTGATTCTGATAAGGATGCGATAGGGGATCAGACGTTTCAGAAGATAACTTTGCTTAGAGACAAAATCTCTCGTAATGTTGCTGCATTGCCAATAGTCTTGAAGAGGTTGAGGGAGTGTATGTCTAATATTGACAAACTGGATTCTCAAAACACGTTCATATATCCTGCAATTAAACGGAAAAGGACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.64

Weight (kDa)

5.91

Isoelectric Point (pI)

69.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01715 AT1G01715 AT4G00525
fragaria_vesca	FvH4_7g14190
malus_domestica	MD07G1138600.v1.1
prunus_persica	Prupe.2G168300_v2.0.a1 Prupe.2G168300_v2.0.a1
pyrus_communis	pycom07g13580
rosa_chinensis	RchiOBHm_Chr1g0355101
rosa_laevigata	RLG00000009237 RLG00000018609 RLG00000028177 RLG00000036631
rosa_multiflora	Rmu_sc0000718.1_g000006 Rmu_sc0000724.1_g000013 Rmu_sc0000735.1_g000022 Rmu_sc0002862.1_g000005 Rmu_sc0003031.1_g000060 Rmu_sc0003090.1_g000015 Rmu_sc0003115.1_g000033 Rmu_sc0006712.1_g000002 Rmu_sc0016725.1_g000006 Rmu_sc0037971.1_g000002 Rmu_sc0038418.1_g000001 Rmu_sc0042503.1_g000001 Rmu_ssc0000218.1_g000065 Rmu_ssc0000432.1_g000038
rosa_roxburghii	Rroxscaffold_1G00059090 Rroxscaffold_2G00111140 Rroxscaffold_4G00300670 Rroxscaffold_6G00399350
rosa_rugosa	Rorug01G0245100 Rorug05G0474400
rosa_samantha	Rh1BG226700 Rh1BG258500 Rh1CG096400 Rh1CG215400 Rh1CG241000 Rh1DG104000 Rh1DG254300 Rh2DG126500 Rh6DG072400 Rh7AG024200
rosa_wichuraiana	Rw0G011230 Rw1G022700 Rw2G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	179
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	5 cut(s)	9, 21, 22, 34, 237
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	152, 194
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	2 cut(s)	77, 304
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	4 cut(s)	43, 106, 137, 393
AluI	AGCT	4 cut(s)	43, 106, 137, 393
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	5 cut(s)	9, 21, 22, 34, 237
AoxI	GGCC	2 cut(s)	33, 87
ApeKI	GCWGC	3 cut(s)	103, 118, 284
AspS9I	GGNCC	1 cut(s)	87
AsuC2I	CCSGG	2 cut(s)	24, 86
AsuHPI	GGTGA	1 cut(s)	167
BamHI	GGATCC	2 cut(s)	14, 26
BanII	GRGCYC	1 cut(s)	187
BbvI	GCAGC	3 cut(s)	105, 115, 271
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	171
BcnI	CCSGG	2 cut(s)	24, 86
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	2 cut(s)	390, 394
BisI	GCNGC	3 cut(s)	104, 119, 285
BlsI	GCNGC	3 cut(s)	105, 120, 286
Bme1390I	CCNGG	3 cut(s)	24, 86, 171
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	5 cut(s)	6, 16, 28, 168, 186
BmrFI	CCNGG	3 cut(s)	24, 86, 171
BmsI	GCATC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	107
BpuMI	CCSGG	2 cut(s)	24, 86
BsaHI	GRCGYC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	30, 170
BsaWI	WCCGGW	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 194
Bse1I	ACTGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	30, 170
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	2 cut(s)	152, 194
BseMI	GCAATG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	3 cut(s)	105, 115, 271
BshFI	GGCC	2 cut(s)	35, 89
BsiSI	CCGG	3 cut(s)	24, 85, 98
BslFI	GGGAC	2 cut(s)	187, 210
BslI	CCNNNNNNNGG	2 cut(s)	152, 194
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	2 cut(s)	187, 210
BsnI	GGCC	2 cut(s)	35, 89
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	3 cut(s)	14, 26, 229
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	2 cut(s)	35, 89
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	5 cut(s)	6, 16, 28, 168, 186
BspPI	GGATC	5 cut(s)	9, 21, 22, 34, 237
BsrDI	GCAATG	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	30, 170
BssMI	GATC	3 cut(s)	14, 26, 229
BssNI	GRCGYC	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	299
BstACI	GRCGYC	1 cut(s)	176
BstDEI	CTNAG	2 cut(s)	107, 257
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	3 cut(s)	17, 29, 232
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	3 cut(s)	14, 26, 229
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	3 cut(s)	22, 84, 169
BstV1I	GCAGC	3 cut(s)	105, 115, 271
BstX2I	RGATCY	2 cut(s)	14, 26
BstYI	RGATCY	2 cut(s)	14, 26
BsuRI	GGCC	2 cut(s)	35, 89
BtsCI	GGATG	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	82
CviJI	RGCY	9 cut(s)	7, 35, 43, 89, 106, 137, 169, 185, 393
CviKI_1	RGCY	9 cut(s)	7, 35, 43, 89, 106, 137, 169, 185, 393
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	2 cut(s)	107, 257
DpnI	GATC	3 cut(s)	16, 28, 231
DpnII	GATC	3 cut(s)	14, 26, 229
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
EciI	GGCGGA	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	187
FaiI	YATR	3 cut(s)	323, 362, 364
FaqI	GGGAC	2 cut(s)	187, 210
Fnu4HI	GCNGC	3 cut(s)	104, 119, 285
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	3 cut(s)	104, 119, 285
FspBI	CTAG	2 cut(s)	390, 394
GluI	GCNGC	3 cut(s)	104, 119, 285
GsuI	CTGGAG	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	35, 89
HapII	CCGG	3 cut(s)	24, 85, 98
Hin1I	GRCGYC	1 cut(s)	176
HinfI	GANTC	3 cut(s)	73, 206, 344
HpaII	CCGG	3 cut(s)	24, 85, 98
HphI	GGTGA	1 cut(s)	167
Hpy188I	TCNGA	6 cut(s)	19, 31, 166, 211, 234, 243
Hpy188III	TCNNGA	4 cut(s)	77, 109, 195, 301
HpyCH4IV	ACGT	3 cut(s)	176, 236, 356
HpyCH4V	TGCA	2 cut(s)	287, 371
HpyF3I	CTNAG	2 cut(s)	107, 257
HpySE526I	ACGT	3 cut(s)	176, 236, 356
Hsp92I	GRCGYC	1 cut(s)	176
Kzo9I	GATC	3 cut(s)	14, 26, 229
LmnI	GCTCC	4 cut(s)	4, 100, 166, 190
Lsp1109I	GCAGC	3 cut(s)	105, 115, 271
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	2 cut(s)	390, 394
MaeII	ACGT	3 cut(s)	176, 236, 356
MalI	GATC	3 cut(s)	16, 28, 231
MboI	GATC	3 cut(s)	14, 26, 229
MboII	GAAGA	3 cut(s)	82, 256, 316
MflI	RGATCY	2 cut(s)	14, 26
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	1 cut(s)	372
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	5 cut(s)	25, 40, 48, 300, 306
MseI	TTAA	1 cut(s)	375
MspI	CCGG	3 cut(s)	24, 85, 98
MspR9I	CCNGG	3 cut(s)	24, 86, 171
MvaI	CCWGG	1 cut(s)	171
NciI	CCSGG	2 cut(s)	24, 86
NdeII	GATC	3 cut(s)	14, 26, 229
NlaIV	GGNNCC	5 cut(s)	6, 16, 28, 168, 186
PfeI	GAWTC	3 cut(s)	73, 206, 344
PkrI	GCNGC	3 cut(s)	105, 120, 286
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	5 cut(s)	6, 16, 28, 168, 186
PspPI	GGNCC	1 cut(s)	87
PsuI	RGATCY	2 cut(s)	14, 26
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	3 cut(s)	104, 119, 285
Sau3AI	GATC	3 cut(s)	14, 26, 229
Sau96I	GGNCC	1 cut(s)	87
ScrFI	CCNGG	3 cut(s)	24, 86, 171
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	8 cut(s)	45, 108, 139, 179, 239, 311, 359, 395
SfaNI	GCATC	1 cut(s)	208
Sse9I	AATT	1 cut(s)	372
SsiI	CCGC	1 cut(s)	65
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	2 cut(s)	390, 394
StyD4I	CCNGG	3 cut(s)	22, 84, 169
TaiI	ACGT	3 cut(s)	179, 239, 359
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	372
TfiI	GAWTC	3 cut(s)	73, 206, 344
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TseI	GCWGC	3 cut(s)	103, 118, 284
TspDTI	ATGAA	1 cut(s)	349
TspGWI	ACGGA	3 cut(s)	27, 177, 394
XspI	CTAG	2 cut(s)	390, 394
ZraI	GACGTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.