Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038418.1

Orthogroup ID

OG0001886

Physical Location & Seq

Genomic Coordinates Reverse (-)

414 .. 746

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038418.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ctgaaaacggacgacccacaaaagctgaagaagatagcgacggcggcttacgactacgagaacgacccaagatgggtcgactactgggccaacatcctcatccctccttacatggcctccagccccgatgcagacaagctggacgagttggagtgccaagtcagcgaaatggcggtgaagattcaagagtaccgagccattgtaccggagcaactcaaaaacacgctgccttccattatcgaagctcagagacccatttcggctgatgggtcagagcctgggacgtccggggatccgaattcgggtaaaggtctttactttttgggttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0121

Protein Analysis

110

Amino Acids

12.21

Weight (kDa)

4.45

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01715 AT1G01715 AT4G00525
fragaria_vesca	FvH4_7g14190
malus_domestica	MD07G1138600.v1.1
prunus_persica	Prupe.2G168300_v2.0.a1 Prupe.2G168300_v2.0.a1
pyrus_communis	pycom07g13580
rosa_chinensis	RchiOBHm_Chr1g0355101
rosa_laevigata	RLG00000009237 RLG00000018609 RLG00000028177 RLG00000036631
rosa_multiflora	Rmu_sc0000718.1_g000006 Rmu_sc0000724.1_g000013 Rmu_sc0000735.1_g000022 Rmu_sc0002862.1_g000005 Rmu_sc0003031.1_g000060 Rmu_sc0003090.1_g000015 Rmu_sc0003115.1_g000033 Rmu_sc0006712.1_g000002 Rmu_sc0016725.1_g000006 Rmu_sc0037971.1_g000002 Rmu_sc0038418.1_g000001 Rmu_sc0042503.1_g000001 Rmu_ssc0000218.1_g000065 Rmu_ssc0000432.1_g000038
rosa_roxburghii	Rroxscaffold_1G00059090 Rroxscaffold_2G00111140 Rroxscaffold_4G00300670 Rroxscaffold_6G00399350
rosa_rugosa	Rorug01G0245100 Rorug05G0474400
rosa_samantha	Rh1BG226700 Rh1BG258500 Rh1CG096400 Rh1CG215400 Rh1CG241000 Rh1DG104000 Rh1DG254300 Rh2DG126500 Rh6DG072400 Rh7AG024200
rosa_wichuraiana	Rw0G011230 Rw1G022700 Rw2G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	287
AccI	GTMKAC	1 cut(s)	78
AciI	CCGC	2 cut(s)	44, 173
AclWI	GGATC	2 cut(s)	287, 300
AcsI	RAATTY	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	2 cut(s)	191, 204
AfiI	CCNNNNNNNGG	2 cut(s)	73, 302
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	3 cut(s)	25, 139, 245
AluI	AGCT	3 cut(s)	25, 139, 245
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	2 cut(s)	287, 300
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	2 cut(s)	87, 114
ApeKI	GCWGC	1 cut(s)	226
ApoI	RAATTY	1 cut(s)	298
AspS9I	GGNCC	1 cut(s)	87
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	187
BamHI	GGATCC	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	2 cut(s)	66, 260
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	244
BisI	GCNGC	2 cut(s)	45, 227
BlsI	GCNGC	2 cut(s)	46, 228
Bme1390I	CCNGG	2 cut(s)	279, 289
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	2 cut(s)	279, 289
BmrI	ACTGGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	289
BsaHI	GRCGYC	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	278, 288
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 302
Bse1I	ACTGG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	278, 288
BseGI	GGATG	2 cut(s)	93, 99
BseLI	CCNNNNNNNGG	2 cut(s)	73, 302
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	213
BshFI	GGCC	2 cut(s)	89, 116
BsiSI	CCGG	2 cut(s)	206, 288
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	2 cut(s)	73, 302
BsmAI	GTCTC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	89, 116
Bso31I	GGTCTC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	2 cut(s)	44, 173
BspANI	GGCC	2 cut(s)	89, 116
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	294
BspPI	GGATC	2 cut(s)	287, 300
BspTNI	GGTCTC	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	278, 288
BssMI	GATC	1 cut(s)	292
BssNI	GRCGYC	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	279
BstACI	GRCGYC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	93, 99
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 162
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	2 cut(s)	277, 287
BstV1I	GCAGC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	89, 116
BtsCI	GGATG	2 cut(s)	93, 99
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	190, 203
CviAII	CATG	1 cut(s)	112
CviQI	GTAC	2 cut(s)	190, 203
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	277
FaeI	CATG	1 cut(s)	115
FaiI	YATR	1 cut(s)	113
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	1 cut(s)	111
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	45, 227
FokI	GGATG	2 cut(s)	80, 86
Fsp4HI	GCNGC	2 cut(s)	45, 227
GluI	GCNGC	2 cut(s)	45, 227
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	2 cut(s)	89, 116
HapII	CCGG	2 cut(s)	206, 288
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	2 cut(s)	206, 288
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	3 cut(s)	249, 274, 297
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	240
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 162
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	7 cut(s)	70, 125, 133, 219, 264, 291, 301
Lsp1109I	GCAGC	1 cut(s)	213
LweI	GCATC	1 cut(s)	118
MaeII	ACGT	1 cut(s)	284
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	3 cut(s)	40, 43, 190
MflI	RGATCY	1 cut(s)	292
MluCI	AATT	1 cut(s)	298
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	3 cut(s)	107, 114, 127
MspI	CCGG	2 cut(s)	206, 288
MspR9I	CCNGG	2 cut(s)	279, 289
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	44, 162
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	46, 228
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	2 cut(s)	191, 204
RsaNI	GTAC	2 cut(s)	190, 203
SalI	GTCGAC	1 cut(s)	77
SatI	GCNGC	2 cut(s)	45, 227
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	1 cut(s)	87
ScrFI	CCNGG	2 cut(s)	279, 289
SetI	ASST	5 cut(s)	27, 141, 247, 287, 313
SfaNI	GCATC	1 cut(s)	118
Sse9I	AATT	1 cut(s)	298
SsiI	CCGC	2 cut(s)	44, 173
StyD4I	CCNGG	2 cut(s)	277, 287
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	2 cut(s)	78, 240
TasI	AATT	1 cut(s)	298
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	23
XapI	RAATTY	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	78
ZraI	GACGTC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.