Rw2G015560

Transmembrane protein 33 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001886
Physical Location & Seq
Forward (+)
18119433 .. 18127874
8442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G015560.1

Sequence Viewer

Length: 270 bp
ATGGCAGTTAAGTGGTTGGCCGGAGTCGTAGAGGTATGGCTGACGTTGCGGGTGTGGTCGGCGTCACAAGGGTGGCTGGACTCGCAGAAGCTGAAGAAGATAGTGGCGGTGGCTTATGACTACGAGAATGATCCGAGATGGGTCGATTACTGGGCTAACATCCCCATCCCTCCTCATATGGCCTCTAGCCCCAACGTCGACGAGTTGGAGTGCCAAGTCACCGAAATGGCGGTGAAGATTCAAGAGTATCGAGCCATTGTACCGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0121

Protein Analysis

89

Amino Acids

10.27

Weight (kDa)

4.86

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 198
AciI CCGC 3 cut(s) 49, 107, 230
AclWI GGATC 1 cut(s) 125
AcoI YGGCCR 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 1 cut(s) 261
AgsI TTSAA 1 cut(s) 242
AleI CACNNNNGTG 1 cut(s) 70
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
AlwI GGATC 1 cut(s) 125
AlwNI CAGNNNCTG 1 cut(s) 91
AoxI GGCC 2 cut(s) 18, 180
AsuHPI GGTGA 2 cut(s) 211, 244
BccI CCATC 2 cut(s) 132, 173
BfaI CTAG 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 160
BmuI ACTGGG 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 62
BsaWI WCCGGW 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 155
BseGI GGATG 2 cut(s) 159, 165
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 162
BshFI GGCC 2 cut(s) 20, 182
BsiSI CCGG 2 cut(s) 21, 263
BsnI GGCC 2 cut(s) 20, 182
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 3 cut(s) 49, 107, 230
BspANI GGCC 2 cut(s) 20, 182
BspPI GGATC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 155
BssMI GATC 1 cut(s) 130
BssNI GRCGYC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 62
BstF5I GGATG 2 cut(s) 159, 165
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 2 cut(s) 46, 82
BsuRI GGCC 2 cut(s) 20, 182
BtsCI GGATG 2 cut(s) 159, 165
CaiI CAGNNNCTG 1 cut(s) 91
CseI GACGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 260
CviJI RGCY 9 cut(s) 20, 40, 76, 91, 113, 155, 182, 189, 254
CviKI_1 RGCY 9 cut(s) 20, 40, 76, 91, 113, 155, 182, 189, 254
CviQI GTAC 1 cut(s) 260
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 113
FaiI YATR 4 cut(s) 37, 117, 177, 179
FauI CCCGC 1 cut(s) 42
FauNDI CATATG 1 cut(s) 177
FblI GTMKAC 1 cut(s) 198
FokI GGATG 2 cut(s) 146, 152
FspBI CTAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 20, 182
HapII CCGG 2 cut(s) 21, 263
HgaI GACGC 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 62
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 3 cut(s) 24, 80, 238
HpaII CCGG 2 cut(s) 21, 263
HphI GGTGA 2 cut(s) 211, 244
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 2 cut(s) 200, 203
HpyCH4IV ACGT 2 cut(s) 44, 195
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 82
HpySE526I ACGT 2 cut(s) 44, 195
Hsp92I GRCGYC 1 cut(s) 62
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 3 cut(s) 34, 62, 136
MaeI CTAG 1 cut(s) 186
MaeII ACGT 2 cut(s) 44, 195
MaeIII GTNAC 2 cut(s) 63, 217
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 3 cut(s) 106, 109, 247
MlyI GAGTC 2 cut(s) 33, 74
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 4 cut(s) 25, 180, 183, 193
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 2 cut(s) 70, 224
MspI CCGG 2 cut(s) 21, 263
MwoI GCNNNNNNNGC 2 cut(s) 46, 82
NdeI CATATG 1 cut(s) 177
NdeII GATC 1 cut(s) 130
NmuCI GTSAC 2 cut(s) 63, 217
OliI CACNNNNGTG 1 cut(s) 70
PfeI GAWTC 1 cut(s) 238
PleI GAGTC 2 cut(s) 32, 74
PpsI GAGTC 2 cut(s) 32, 74
PstNI CAGNNNCTG 1 cut(s) 91
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
RseI CAYNNNNRTG 2 cut(s) 70, 224
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 9
Sau3AI GATC 1 cut(s) 130
SchI GAGTC 2 cut(s) 33, 74
SetI ASST 4 cut(s) 36, 47, 93, 198
SgrDI CGTCGACG 1 cut(s) 197
SmiMI CAYNNNNRTG 2 cut(s) 70, 224
SsiI CCGC 3 cut(s) 49, 107, 230
SspMI CTAG 1 cut(s) 186
TaiI ACGT 2 cut(s) 47, 198
TaqI TCGA 3 cut(s) 144, 198, 250
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TseFI GTSAC 2 cut(s) 63, 217
Tsp45I GTSAC 2 cut(s) 63, 217
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.