Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001886

Physical Location & Seq

Genomic Coordinates Forward (+)

21631384 .. 21633586

Gene Structure 2203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G168300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGTTGAACGAGCGTCAGGGCTCCGAAAGCGGACACGACCCAGAAGAGCTGGAGGTGCTGGAGTGTGAAGTGAAGGAAATGGCAGAGAAGATTTTAGAATACAGAGCCACTTTACCAGATCAGCTCAAGAACACCTTCGCCTCAATTCTCGCTGTTCAGCAACCTGTTTTTCTGAATGGGTCGGATCCTGGGACTTCCGGAGCTCCGAATTCGGGTGCAGGTCAAGTTGCTTCTAATAAGGGGGCATTACTGGCTGATGGAGATCAGACTTCCGAGAAGTTGCGATTGTTTAGAGATAAACTTTCCAGCAATTTTGCTGCCTTGCCTATTCTTTTGAAGAGGATGACAGAGTGTATTTCAAAGATTGACAATTTAGACTCTGAAAACATAATCATACATCCTGCATTTAAAAAGAAAAGGACTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.6

Weight (kDa)

5.24

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01715 AT1G01715 AT4G00525
fragaria_vesca	FvH4_7g14190
malus_domestica	MD07G1138600.v1.1
prunus_persica	Prupe.2G168300_v2.0.a1 Prupe.2G168300_v2.0.a1
pyrus_communis	pycom07g13580
rosa_chinensis	RchiOBHm_Chr1g0355101
rosa_laevigata	RLG00000009237 RLG00000018609 RLG00000028177 RLG00000036631
rosa_multiflora	Rmu_sc0000718.1_g000006 Rmu_sc0000724.1_g000013 Rmu_sc0000735.1_g000022 Rmu_sc0002862.1_g000005 Rmu_sc0003031.1_g000060 Rmu_sc0003090.1_g000015 Rmu_sc0003115.1_g000033 Rmu_sc0006712.1_g000002 Rmu_sc0016725.1_g000006 Rmu_sc0037971.1_g000002 Rmu_sc0038418.1_g000001 Rmu_sc0042503.1_g000001 Rmu_ssc0000218.1_g000065 Rmu_ssc0000432.1_g000038
rosa_roxburghii	Rroxscaffold_1G00059090 Rroxscaffold_2G00111140 Rroxscaffold_4G00300670 Rroxscaffold_6G00399350
rosa_rugosa	Rorug01G0245100 Rorug05G0474400
rosa_samantha	Rh1BG226700 Rh1BG258500 Rh1CG096400 Rh1CG215400 Rh1CG241000 Rh1DG104000 Rh1DG254300 Rh2DG126500 Rh6DG072400 Rh7AG024200
rosa_wichuraiana	Rw0G011230 Rw1G022700 Rw2G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	212
AccIII	TCCGGA	1 cut(s)	200
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	2 cut(s)	182, 195
AcsI	RAATTY	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	3 cut(s)	10, 340, 363
AhlI	ACTAGT	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	3 cut(s)	52, 127, 206
AluI	AGCT	3 cut(s)	52, 127, 206
Alw21I	GWGCWC	1 cut(s)	208
AlwI	GGATC	2 cut(s)	182, 195
Aor13HI	TCCGGA	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	211
Asp700I	GAANNNNTTC	1 cut(s)	137
BamHI	GGATCC	1 cut(s)	187
BanII	GRGCYC	2 cut(s)	26, 208
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	192
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	1 cut(s)	426
BfuAI	ACCTGC	1 cut(s)	212
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	1 cut(s)	192
BmiI	GGNNCC	2 cut(s)	25, 189
BmrFI	CCNGG	1 cut(s)	192
BpmI	CTGGAG	2 cut(s)	74, 83
BpuEI	CTTGAG	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	264
BseAI	TCCGGA	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	2 cut(s)	351, 400
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	307
BsgI	GTGCAG	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	208
Bsp1286I	GDGCHC	2 cut(s)	26, 208
Bsp13I	TCCGGA	1 cut(s)	200
Bsp143I	GATC	3 cut(s)	121, 187, 265
BspACI	CCGC	1 cut(s)	33
BspEI	TCCGGA	1 cut(s)	200
BspLI	GGNNCC	2 cut(s)	25, 189
BspMI	ACCTGC	1 cut(s)	212
BspPI	GGATC	2 cut(s)	182, 195
BspQI	GCTCTTC	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	3 cut(s)	121, 187, 265
Bst2UI	CCWGG	1 cut(s)	192
Bst6I	CTCTTC	2 cut(s)	42, 335
BstF5I	GGATG	2 cut(s)	351, 400
BstKTI	GATC	3 cut(s)	124, 190, 268
BstMBI	GATC	3 cut(s)	121, 187, 265
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 58, 254
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	351, 400
BveI	ACCTGC	1 cut(s)	212
CseI	GACGC	1 cut(s)	5
CviJI	RGCY	6 cut(s)	24, 52, 110, 127, 206, 257
CviKI_1	RGCY	6 cut(s)	24, 52, 110, 127, 206, 257
DpnI	GATC	3 cut(s)	123, 189, 267
DpnII	GATC	3 cut(s)	121, 187, 265
DraI	TTTAAA	1 cut(s)	412
Eam1104I	CTCTTC	2 cut(s)	42, 335
EarI	CTCTTC	2 cut(s)	42, 335
Ecl136II	GAGCTC	1 cut(s)	206
Eco24I	GRGCYC	2 cut(s)	26, 208
Eco53kI	GAGCTC	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	190
EcoT38I	GRGCYC	2 cut(s)	26, 208
FaiI	YATR	2 cut(s)	392, 398
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	2 cut(s)	358, 387
FriOI	GRGCYC	2 cut(s)	26, 208
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	1 cut(s)	426
GluI	GCNGC	1 cut(s)	321
GsuI	CTGGAG	2 cut(s)	74, 83
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	1 cut(s)	201
Hpy188I	TCNGA	7 cut(s)	28, 177, 187, 210, 270, 277, 385
Hpy188III	TCNNGA	2 cut(s)	130, 201
HpyAV	CCTTC	2 cut(s)	70, 148
HpyCH4V	TGCA	2 cut(s)	221, 407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 58, 254
Kpn2I	TCCGGA	1 cut(s)	200
Kzo9I	GATC	3 cut(s)	121, 187, 265
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	3 cut(s)	29, 203, 211
Lsp1109I	GCAGC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	426
MalI	GATC	3 cut(s)	123, 189, 267
MboI	GATC	3 cut(s)	121, 187, 265
MboII	GAAGA	3 cut(s)	59, 103, 352
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	26, 208
MluCI	AATT	4 cut(s)	147, 211, 313, 373
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	3 cut(s)	49, 154, 336
MroI	TCCGGA	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	137
MseI	TTAA	1 cut(s)	411
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	3 cut(s)	30, 58, 254
NdeII	GATC	3 cut(s)	121, 187, 265
NlaIV	GGNNCC	2 cut(s)	25, 189
PciSI	GCTCTTC	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
Psp124BI	GAGCTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	25, 189
PsuI	RGATCY	1 cut(s)	187
SacI	GAGCTC	1 cut(s)	208
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	3 cut(s)	121, 187, 265
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	2 cut(s)	26, 208
SetI	ASST	7 cut(s)	54, 60, 129, 140, 169, 208, 226
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SpeI	ACTAGT	1 cut(s)	425
Sse9I	AATT	4 cut(s)	147, 211, 313, 373
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	426
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	190
TasI	AATT	4 cut(s)	147, 211, 313, 373
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseI	GCWGC	1 cut(s)	320
XapI	RAATTY	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	137
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.