Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000432.1

Orthogroup ID

OG0001886

Physical Location & Seq

Genomic Coordinates Reverse (-)

136627 .. 139227

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000432.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggctggtttgctcaagtttcatcgttgctttttggtggcggttccttcaggcattgtggttctggcttgctcgcagcggagtggcgttggaggctcgctttgttttagtgcgtacggcggttctgcacaggtaaggatgattgtactgggctgggccaccgcctggccgacgtcggaacaaggatttccgaccgggtccgaaaacaccaacctgcaccgccttctaccgccgccaccaccgagaatcggtgatagaggacaccacagggacgaccagaaggaggaggcgatcaaatctggaaaatttcgtcgccggaaaattcgggtcggatcgtccgggttcgggtcgggtcagccggataatttcgattctgaaggtgcagccgagagagaagagagagagaaaggaattggtttttccagaaaagggaacttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

15.78

Weight (kDa)

9.84

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01715 AT1G01715 AT4G00525
fragaria_vesca	FvH4_7g14190
malus_domestica	MD07G1138600.v1.1
prunus_persica	Prupe.2G168300_v2.0.a1 Prupe.2G168300_v2.0.a1
pyrus_communis	pycom07g13580
rosa_chinensis	RchiOBHm_Chr1g0355101
rosa_laevigata	RLG00000009237 RLG00000018609 RLG00000028177 RLG00000036631
rosa_multiflora	Rmu_sc0000718.1_g000006 Rmu_sc0000724.1_g000013 Rmu_sc0000735.1_g000022 Rmu_sc0002862.1_g000005 Rmu_sc0003031.1_g000060 Rmu_sc0003090.1_g000015 Rmu_sc0003115.1_g000033 Rmu_sc0006712.1_g000002 Rmu_sc0016725.1_g000006 Rmu_sc0037971.1_g000002 Rmu_sc0038418.1_g000001 Rmu_sc0042503.1_g000001 Rmu_ssc0000218.1_g000065 Rmu_ssc0000432.1_g000038
rosa_roxburghii	Rroxscaffold_1G00059090 Rroxscaffold_2G00111140 Rroxscaffold_4G00300670 Rroxscaffold_6G00399350
rosa_rugosa	Rorug01G0245100 Rorug05G0474400
rosa_samantha	Rh1BG226700 Rh1BG258500 Rh1CG096400 Rh1CG215400 Rh1CG241000 Rh1DG104000 Rh1DG254300 Rh2DG126500 Rh6DG072400 Rh7AG024200
rosa_wichuraiana	Rw0G011230 Rw1G022700 Rw2G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	176
Acc36I	ACCTGC	1 cut(s)	222
AccB7I	CCANNNNNTGG	1 cut(s)	165
AciI	CCGC	7 cut(s)	41, 79, 120, 162, 220, 230, 233
AclWI	GGATC	1 cut(s)	340
AcoI	YGGCCR	1 cut(s)	167
AcsI	RAATTY	2 cut(s)	305, 321
AcuI	CTGAAG	2 cut(s)	33, 396
AcyI	GRCGYC	1 cut(s)	173
AfaI	GTAC	2 cut(s)	116, 147
AfiI	CCNNNNNNNGG	5 cut(s)	165, 248, 283, 345, 429
AjnI	CCWGG	1 cut(s)	164
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	2 cut(s)	156, 167
ApeKI	GCWGC	2 cut(s)	76, 383
ApoI	RAATTY	2 cut(s)	305, 321
AspS9I	GGNCC	2 cut(s)	156, 198
AsuC2I	CCSGG	2 cut(s)	196, 340
AsuHPI	GGTGA	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	88, 395
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	166
BcnI	CCSGG	2 cut(s)	196, 340
BfuAI	ACCTGC	1 cut(s)	222
BisI	GCNGC	3 cut(s)	77, 233, 384
BlsI	GCNGC	3 cut(s)	78, 234, 385
Bme1390I	CCNGG	3 cut(s)	166, 196, 340
Bme18I	GGWCC	1 cut(s)	198
BmgT120I	GGNCC	2 cut(s)	156, 198
BmiI	GGNNCC	2 cut(s)	45, 199
BmrFI	CCNGG	3 cut(s)	166, 196, 340
BmrI	ACTGGG	1 cut(s)	158
BmuI	ACTGGG	1 cut(s)	158
BpuMI	CCSGG	2 cut(s)	196, 340
BsaHI	GRCGYC	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	5 cut(s)	165, 248, 283, 345, 429
Bse1I	ACTGG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	5 cut(s)	165, 248, 283, 345, 429
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	88, 395
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	3 cut(s)	111, 200, 402
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	158, 169
BsiEI	CGRYCG	1 cut(s)	195
BsiSI	CCGG	4 cut(s)	195, 316, 339, 359
BsiWI	CGTACG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	5 cut(s)	165, 248, 283, 345, 429
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	158, 169
Bsp143I	GATC	2 cut(s)	291, 332
BspACI	CCGC	7 cut(s)	41, 79, 120, 162, 220, 230, 233
BspANI	GGCC	2 cut(s)	158, 169
BspLI	GGNNCC	2 cut(s)	45, 199
BspMI	ACCTGC	1 cut(s)	222
BspPI	GGATC	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	153
BssMI	GATC	2 cut(s)	291, 332
BssNI	GRCGYC	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	173
BstC8I	GCNNGC	3 cut(s)	70, 74, 98
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	2 cut(s)	294, 335
BstMBI	GATC	2 cut(s)	291, 332
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	3 cut(s)	164, 194, 338
BstV1I	GCAGC	2 cut(s)	88, 395
BsuRI	GGCC	2 cut(s)	158, 169
BtsCI	GGATG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	222
Cac8I	GCNNGC	3 cut(s)	70, 74, 98
Cfr13I	GGNCC	2 cut(s)	156, 198
Csp6I	GTAC	2 cut(s)	115, 146
CviJI	RGCY	8 cut(s)	5, 68, 96, 153, 158, 169, 358, 386
CviKI_1	RGCY	8 cut(s)	5, 68, 96, 153, 158, 169, 358, 386
CviQI	GTAC	2 cut(s)	115, 146
DpnI	GATC	2 cut(s)	293, 334
DpnII	GATC	2 cut(s)	291, 332
EaeI	YGGCCR	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	198
Eco57I	CTGAAG	2 cut(s)	33, 396
EcoRII	CCWGG	1 cut(s)	164
FaiI	YATR	1 cut(s)	439
FaqI	GGGAC	1 cut(s)	284
Fnu4HI	GCNGC	3 cut(s)	77, 233, 384
FokI	GGATG	1 cut(s)	151
Fsp4HI	GCNGC	3 cut(s)	77, 233, 384
GluI	GCNGC	3 cut(s)	77, 233, 384
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	158, 169
HapII	CCGG	4 cut(s)	195, 316, 339, 359
Hin1I	GRCGYC	1 cut(s)	173
HinfI	GANTC	2 cut(s)	246, 371
HpaII	CCGG	4 cut(s)	195, 316, 339, 359
HphI	GGTGA	1 cut(s)	263
Hpy188I	TCNGA	5 cut(s)	178, 192, 202, 332, 376
Hpy188III	TCNNGA	2 cut(s)	300, 423
Hpy99I	CGWCG	3 cut(s)	175, 178, 315
HpyAV	CCTTC	4 cut(s)	57, 233, 274, 371
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	3 cut(s)	128, 217, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	173
Hsp92I	GRCGYC	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	291, 332
Lsp1109I	GCAGC	2 cut(s)	88, 395
MaeII	ACGT	1 cut(s)	173
MalI	GATC	2 cut(s)	293, 334
MboI	GATC	2 cut(s)	291, 332
MboII	GAAGA	1 cut(s)	407
MluCI	AATT	4 cut(s)	305, 321, 364, 411
MmeI	TCCRAC	4 cut(s)	70, 156, 215, 310
MnlI	CCTC	4 cut(s)	86, 251, 277, 280
MspA1I	CMGCKG	1 cut(s)	79
MspI	CCGG	4 cut(s)	195, 316, 339, 359
MspR9I	CCNGG	3 cut(s)	166, 196, 340
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	93
NciI	CCSGG	2 cut(s)	196, 340
NdeII	GATC	2 cut(s)	291, 332
NlaIV	GGNNCC	2 cut(s)	45, 199
NmeAIII	GCCGAG	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	246, 371
Pfl23II	CGTACG	1 cut(s)	114
PflFI	GACNNNGTC	1 cut(s)	196
PflMI	CCANNNNNTGG	1 cut(s)	165
PkrI	GCNGC	3 cut(s)	78, 234, 385
Psp6I	CCWGG	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	164
PspLI	CGTACG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	45, 199
PspPI	GGNCC	2 cut(s)	156, 198
PsyI	GACNNNGTC	1 cut(s)	196
RsaI	GTAC	2 cut(s)	116, 147
RsaNI	GTAC	2 cut(s)	115, 146
SatI	GCNGC	3 cut(s)	77, 233, 384
Sau3AI	GATC	2 cut(s)	291, 332
Sau96I	GGNCC	2 cut(s)	156, 198
ScrFI	CCNGG	3 cut(s)	166, 196, 340
SetI	ASST	4 cut(s)	135, 176, 216, 382
SinI	GGWCC	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	4 cut(s)	305, 321, 364, 411
SsiI	CCGC	7 cut(s)	41, 79, 120, 162, 220, 230, 233
StyD4I	CCNGG	3 cut(s)	164, 194, 338
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	369
TasI	AATT	4 cut(s)	305, 321, 364, 411
TatI	WGTACW	1 cut(s)	145
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	2 cut(s)	246, 371
TseI	GCWGC	2 cut(s)	76, 383
TspDTI	ATGAA	1 cut(s)	11
Tth111I	GACNNNGTC	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	198
XapI	RAATTY	2 cut(s)	305, 321
ZraI	GACGTC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.