Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001886

Physical Location & Seq

Genomic Coordinates Forward (+)

50086063 .. 50088434

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG241000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCGTCCACGGGATCCGAACCCGGATCCGACGGCGACGAGCTGGAGTGCCAAGTTACCGAAATGGCGGTGAAGATTCGAGAGTACCGAGCCACTGTACCGGAGCAGCTCAAGAACACGCTGCCGTCCATTATCGAAGCTCAGAGACCCGTTTTGGCTGATGGGTCGGAGCCTGGGACGTCCGGGGATCCGAATTCGGGACAGATTGCTTCTGATAAGGATGCGTTAGGGGATCAGACGTTTCAGAAGATAAATTTGCTTAGAGACAAAATCTCTCGTAATGTTGCTGCATTGCCGATTGTCTTGAAGAGGTTGAAGGAGTGTATGTCTAATATTGACAAACTGGATTCTCAAAACACATTCATACATCCTGCATTTAAACGGAAAAGGACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.44

Weight (kDa)

5.86

Isoelectric Point (pI)

53.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01715 AT1G01715 AT4G00525
fragaria_vesca	FvH4_7g14190
malus_domestica	MD07G1138600.v1.1
prunus_persica	Prupe.2G168300_v2.0.a1 Prupe.2G168300_v2.0.a1
pyrus_communis	pycom07g13580
rosa_chinensis	RchiOBHm_Chr1g0355101
rosa_laevigata	RLG00000009237 RLG00000018609 RLG00000028177 RLG00000036631
rosa_multiflora	Rmu_sc0000718.1_g000006 Rmu_sc0000724.1_g000013 Rmu_sc0000735.1_g000022 Rmu_sc0002862.1_g000005 Rmu_sc0003031.1_g000060 Rmu_sc0003090.1_g000015 Rmu_sc0003115.1_g000033 Rmu_sc0006712.1_g000002 Rmu_sc0016725.1_g000006 Rmu_sc0037971.1_g000002 Rmu_sc0038418.1_g000001 Rmu_sc0042503.1_g000001 Rmu_ssc0000218.1_g000065 Rmu_ssc0000432.1_g000038
rosa_roxburghii	Rroxscaffold_1G00059090 Rroxscaffold_2G00111140 Rroxscaffold_4G00300670 Rroxscaffold_6G00399350
rosa_rugosa	Rorug01G0245100 Rorug05G0474400
rosa_samantha	Rh1BG226700 Rh1BG258500 Rh1CG096400 Rh1CG215400 Rh1CG241000 Rh1DG104000 Rh1DG254300 Rh2DG126500 Rh6DG072400 Rh7AG024200
rosa_wichuraiana	Rw0G011230 Rw1G022700 Rw2G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	182
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	7 cut(s)	9, 21, 22, 34, 182, 195, 240
AcsI	RAATTY	2 cut(s)	193, 253
AcyI	GRCGYC	2 cut(s)	5, 179
AfaI	GTAC	2 cut(s)	86, 99
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	307, 316
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	4 cut(s)	43, 109, 140, 396
AluI	AGCT	4 cut(s)	43, 109, 140, 396
Alw26I	GTCTC	2 cut(s)	139, 258
AlwI	GGATC	7 cut(s)	9, 21, 22, 34, 182, 195, 240
ApeKI	GCWGC	3 cut(s)	106, 121, 287
ApoI	RAATTY	2 cut(s)	193, 253
AsuC2I	CCSGG	2 cut(s)	24, 184
AsuHPI	GGTGA	1 cut(s)	82
BamHI	GGATCC	3 cut(s)	14, 26, 187
BbvI	GCAGC	3 cut(s)	108, 118, 274
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	2 cut(s)	49, 109
BciT130I	CCWGG	1 cut(s)	174
BcnI	CCSGG	2 cut(s)	24, 184
BcoDI	GTCTC	2 cut(s)	139, 258
BfaI	CTAG	2 cut(s)	393, 397
BisI	GCNGC	3 cut(s)	107, 122, 288
BlsI	GCNGC	3 cut(s)	108, 123, 289
Bme1390I	CCNGG	3 cut(s)	24, 174, 184
BmiI	GGNNCC	4 cut(s)	16, 28, 171, 189
BmrFI	CCNGG	3 cut(s)	24, 174, 184
BmsI	GCATC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	2 cut(s)	24, 184
BsaHI	GRCGYC	2 cut(s)	5, 179
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	3 cut(s)	9, 173, 183
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	3 cut(s)	9, 173, 183
BseGI	GGATG	2 cut(s)	226, 367
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	348
BseXI	GCAGC	3 cut(s)	108, 118, 274
BsiSI	CCGG	3 cut(s)	24, 101, 183
BslFI	GGGAC	2 cut(s)	190, 213
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	2 cut(s)	139, 258
BsmFI	GGGAC	2 cut(s)	190, 213
Bso31I	GGTCTC	1 cut(s)	139
Bsp143I	GATC	4 cut(s)	14, 26, 187, 232
BspACI	CCGC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	4 cut(s)	16, 28, 171, 189
BspPI	GGATC	7 cut(s)	9, 21, 22, 34, 182, 195, 240
BspTNI	GGTCTC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	3 cut(s)	9, 173, 183
BssMI	GATC	4 cut(s)	14, 26, 187, 232
BssNI	GRCGYC	2 cut(s)	5, 179
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	1 cut(s)	302
BstACI	GRCGYC	2 cut(s)	5, 179
BstDEI	CTNAG	2 cut(s)	141, 260
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	226, 367
BstKTI	GATC	4 cut(s)	17, 29, 190, 235
BstMAI	GTCTC	2 cut(s)	139, 258
BstMBI	GATC	4 cut(s)	14, 26, 187, 232
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	3 cut(s)	22, 172, 182
BstV1I	GCAGC	3 cut(s)	108, 118, 274
BstX2I	RGATCY	3 cut(s)	14, 26, 187
BstYI	RGATCY	3 cut(s)	14, 26, 187
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	226, 367
BtsIMutI	CAGTG	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	85, 98
CviJI	RGCY	7 cut(s)	43, 92, 109, 140, 158, 172, 396
CviKI_1	RGCY	7 cut(s)	43, 92, 109, 140, 158, 172, 396
CviQI	GTAC	2 cut(s)	85, 98
DdeI	CTNAG	2 cut(s)	141, 260
DpnI	GATC	4 cut(s)	16, 28, 189, 234
DpnII	GATC	4 cut(s)	14, 26, 187, 232
DraI	TTTAAA	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	139
EcoRI	GAATTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	172
FaiI	YATR	2 cut(s)	326, 365
FaqI	GGGAC	2 cut(s)	190, 213
Fnu4HI	GCNGC	3 cut(s)	107, 122, 288
FokI	GGATG	2 cut(s)	233, 354
Fsp4HI	GCNGC	3 cut(s)	107, 122, 288
FspBI	CTAG	2 cut(s)	393, 397
GluI	GCNGC	3 cut(s)	107, 122, 288
GsuI	CTGGAG	1 cut(s)	65
HapII	CCGG	3 cut(s)	24, 101, 183
Hin1I	GRCGYC	2 cut(s)	5, 179
HinfI	GANTC	2 cut(s)	76, 347
HpaII	CCGG	3 cut(s)	24, 101, 183
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	8 cut(s)	19, 31, 144, 169, 192, 214, 237, 246
Hpy188III	TCNNGA	4 cut(s)	80, 112, 198, 304
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	2 cut(s)	35, 41
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	2 cut(s)	179, 239
HpyCH4V	TGCA	2 cut(s)	290, 374
HpyF3I	CTNAG	2 cut(s)	141, 260
HpySE526I	ACGT	2 cut(s)	179, 239
Hsp92I	GRCGYC	2 cut(s)	5, 179
Kzo9I	GATC	4 cut(s)	14, 26, 187, 232
LmnI	GCTCC	2 cut(s)	103, 169
LpnPI	CCDG	8 cut(s)	29, 37, 114, 159, 186, 196, 329, 384
Lsp1109I	GCAGC	3 cut(s)	108, 118, 274
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	2 cut(s)	393, 397
MaeII	ACGT	2 cut(s)	179, 239
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	16, 28, 189, 234
MboI	GATC	4 cut(s)	14, 26, 187, 232
MboII	GAAGA	3 cut(s)	85, 259, 319
MflI	RGATCY	3 cut(s)	14, 26, 187
MluCI	AATT	2 cut(s)	193, 253
MmeI	TCCRAC	2 cut(s)	54, 147
MnlI	CCTC	1 cut(s)	303
MseI	TTAA	1 cut(s)	378
MspI	CCGG	3 cut(s)	24, 101, 183
MspR9I	CCNGG	3 cut(s)	24, 174, 184
MvaI	CCWGG	1 cut(s)	174
NciI	CCSGG	2 cut(s)	24, 184
NdeII	GATC	4 cut(s)	14, 26, 187, 232
NlaIV	GGNNCC	4 cut(s)	16, 28, 171, 189
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	76, 347
PkrI	GCNGC	3 cut(s)	108, 123, 289
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	4 cut(s)	16, 28, 171, 189
PsuI	RGATCY	3 cut(s)	14, 26, 187
RsaI	GTAC	2 cut(s)	86, 99
RsaNI	GTAC	2 cut(s)	85, 98
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	3 cut(s)	107, 122, 288
Sau3AI	GATC	4 cut(s)	14, 26, 187, 232
ScrFI	CCNGG	3 cut(s)	24, 174, 184
SetI	ASST	7 cut(s)	45, 111, 142, 182, 242, 314, 398
SfaNI	GCATC	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	193, 253
SsiI	CCGC	1 cut(s)	68
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	2 cut(s)	393, 397
StyD4I	CCNGG	3 cut(s)	22, 172, 182
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	2 cut(s)	182, 242
TaqI	TCGA	2 cut(s)	79, 135
TasI	AATT	2 cut(s)	193, 253
TfiI	GAWTC	2 cut(s)	76, 347
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	3 cut(s)	106, 121, 287
TspDTI	ATGAA	1 cut(s)	352
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	1 cut(s)	100
XapI	RAATTY	2 cut(s)	193, 253
XspI	CTAG	2 cut(s)	393, 397
ZraI	GACGTC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.