Rh7AG024200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001886
Physical Location & Seq
Reverse (-)
1582253 .. 1582474
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG024200.1

Sequence Viewer

Length: 222 bp
ATGGCCTCTAGCCCCGACGCCTACGAGCTGGACGAGTTAGAGTGCCAAGTCACCGAAATGGCGGTGAAGATTCAAGAGTACCGAGCCACTGTACCGGAGCAGCTCAAGAACACGCTGCCTTCCATTATCAAAGCTCAGAGACCAGTTTCGGCTGATGGGTCAGAGCCTGGGACATCCGGGGATCCGAATTCGGGTAAAGGTTTTTGCTTTTTGGGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.81

Weight (kDa)

4.41

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 62
AclWI GGATC 2 cut(s) 176, 189
AcsI RAATTY 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 2 cut(s) 80, 93
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 74
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 3 cut(s) 28, 103, 134
AluI AGCT 3 cut(s) 28, 103, 134
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 2 cut(s) 176, 189
AlwNI CAGNNNCTG 1 cut(s) 167
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 100, 115
ApoI RAATTY 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 178
AsuHPI GGTGA 2 cut(s) 43, 76
BamHI GGATCC 1 cut(s) 181
BbvI GCAGC 2 cut(s) 102, 112
BccI CCATC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 168
BcnI CCSGG 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 1 cut(s) 9
BisI GCNGC 2 cut(s) 101, 116
BlsI GCNGC 2 cut(s) 102, 117
Bme1390I CCNGG 2 cut(s) 168, 178
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 2 cut(s) 168, 178
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 167, 177
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 143
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 167, 177
BseGI GGATG 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 143
BseXI GCAGC 2 cut(s) 102, 112
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 95, 177
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 133
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 1 cut(s) 62
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 183
BspPI GGATC 2 cut(s) 176, 189
BspTNI GGTCTC 1 cut(s) 133
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 167, 177
BssMI GATC 1 cut(s) 181
BssNI GRCGYC 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 91
BstACI GRCGYC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 173
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 2 cut(s) 166, 176
BstV1I GCAGC 2 cut(s) 102, 112
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 87
CaiI CAGNNNCTG 1 cut(s) 167
CseI GACGC 1 cut(s) 26
Csp6I GTAC 2 cut(s) 79, 92
CviJI RGCY 8 cut(s) 5, 12, 28, 86, 103, 134, 152, 166
CviKI_1 RGCY 8 cut(s) 5, 12, 28, 86, 103, 134, 152, 166
CviQI GTAC 2 cut(s) 79, 92
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 166
FaqI GGGAC 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 101, 116
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 2 cut(s) 101, 116
FspBI CTAG 1 cut(s) 9
GluI GCNGC 2 cut(s) 101, 116
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 95, 177
HgaI GACGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 18
HinfI GANTC 1 cut(s) 70
HpaII CCGG 2 cut(s) 95, 177
HphI GGTGA 2 cut(s) 43, 76
Hpy188I TCNGA 3 cut(s) 138, 163, 186
Hpy188III TCNNGA 2 cut(s) 74, 106
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 18
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 6 cut(s) 14, 108, 153, 156, 180, 190
Lsp1109I GCAGC 2 cut(s) 102, 112
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 1 cut(s) 79
MflI RGATCY 1 cut(s) 181
MluCI AATT 1 cut(s) 187
MnlI CCTC 1 cut(s) 16
MslI CAYNNNNRTG 1 cut(s) 56
MspI CCGG 2 cut(s) 95, 177
MspR9I CCNGG 2 cut(s) 168, 178
MvaI CCWGG 1 cut(s) 168
NciI CCSGG 1 cut(s) 178
NdeII GATC 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 183
NmuCI GTSAC 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 2 cut(s) 102, 117
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 183
PstNI CAGNNNCTG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 2 cut(s) 80, 93
RsaNI GTAC 2 cut(s) 79, 92
RseI CAYNNNNRTG 1 cut(s) 56
SatI GCNGC 2 cut(s) 101, 116
Sau3AI GATC 1 cut(s) 181
ScrFI CCNGG 2 cut(s) 168, 178
SetI ASST 4 cut(s) 30, 105, 136, 202
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 1 cut(s) 187
SsiI CCGC 1 cut(s) 62
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 166, 176
TaaI ACNGT 1 cut(s) 91
TasI AATT 1 cut(s) 187
TfiI GAWTC 1 cut(s) 70
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 2 cut(s) 100, 115
Tsp45I GTSAC 1 cut(s) 49
TspRI CASTG 1 cut(s) 94
XapI RAATTY 1 cut(s) 187
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.